genome.fa.s35.2.7.7.80.10.50.1000.78.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  78  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15672449--15672526	27	2.7	29	80	15	90	20	2	8	67	1.30
15682375--15682456	29	2.7	30	83	9	87	36	0	1	62	1.03
15682488--15682523	18	1.9	18	88	5	54	47	0	0	52	1.00
15684807--15684833	14	1.9	14	100	0	54	29	37	7	25	1.83
15684934--15684960	11	2.5	11	100	0	54	59	7	0	33	1.25
15684939--15685012	29	2.5	29	80	8	78	44	10	1	43	1.47
15685018--15685069	21	2.5	22	84	12	65	55	5	3	34	1.42
15685084--15685190	9	11.4	9	68	16	58	56	8	0	34	1.36
15685091--15685143	27	2.0	27	85	7	72	56	7	0	35	1.28
15685103--15685190	17	4.9	17	74	16	70	57	7	1	32	1.35
15685113--15685199	19	4.7	18	71	14	61	60	8	1	29	1.32
15685188--15685212	13	1.9	13	100	0	50	72	12	0	16	1.13
15685263--15685310	24	2.0	25	88	12	73	66	6	2	25	1.26
15685477--15685520	23	2.0	22	86	4	61	45	2	2	50	1.27
15685500--15685563	20	3.2	20	78	6	69	37	9	0	53	1.34
15685477--15685565	20	4.3	21	77	7	67	40	7	1	50	1.39
15685551--15685593	22	1.9	22	85	4	59	18	4	2	74	1.10
15685735--15685775	10	4.1	10	81	12	57	48	0	2	48	1.14
15685720--15685786	19	3.6	18	82	8	71	47	1	2	47	1.26
15685950--15686000	18	2.8	18	78	3	57	33	1	1	62	1.17
15687076--15687119	17	2.6	17	85	3	54	43	0	2	54	1.12
15688129--15688179	19	2.7	20	81	9	61	35	1	0	62	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15688257--15688293	17	2.2	17	90	4	58	13	5	2	78	1.03
15688888--15688949	16	3.9	15	77	12	61	12	0	9	77	0.99
15689366--15689414	15	3.4	14	77	8	53	10	14	0	75	1.04
15689713--15689740	6	4.7	6	100	0	56	53	0	0	46	1.00
15690542--15690571	12	2.5	12	94	0	51	63	6	0	30	1.20
15693269--15693293	2	12.5	2	100	0	50	52	0	0	48	1.00
15697005--15697051	23	2.0	23	84	8	60	55	0	0	44	0.99
15697033--15697121	16	5.5	15	72	17	63	49	0	2	48	1.13
15697021--15697069	9	5.6	9	79	13	57	51	0	0	48	1.00
15697073--15697103	14	2.3	14	94	5	55	48	0	0	51	1.00
15697219--15697258	21	1.9	21	89	0	62	47	0	0	52	1.00
15699112--15699172	29	2.1	29	84	6	79	44	3	0	52	1.17
15699158--15699204	22	2.1	22	88	4	67	31	0	2	65	1.04
15699191--15699216	11	2.4	11	100	0	52	26	0	0	73	0.84
15699802--15699852	18	2.9	18	75	13	52	54	0	3	41	1.19
15701269--15701304	17	2.2	17	90	5	56	11	2	0	86	0.68
15701557--15701600	13	3.7	12	82	17	56	77	0	2	20	0.88
15701537--15701598	8	7.4	8	73	10	52	75	1	4	17	1.05
15706009--15706044	18	2.0	18	100	0	72	22	27	11	38	1.88
15706568--15706593	13	2.0	13	100	0	52	46	30	0	23	1.53
15713763--15713851	43	2.1	43	95	0	160	34	10	15	39	1.81
15716526--15716562	2	18.5	2	100	0	74	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15716964--15716991	2	14.0	2	100	0	56	50	0	0	50	1.00
15717127--15717162	17	2.1	17	89	0	54	63	2	0	33	1.08
15717181--15717206	2	13.0	2	100	0	52	50	0	0	50	1.00
15717361--15717391	2	15.5	2	100	0	62	51	0	0	48	1.00
15718835--15718885	25	2.0	25	100	0	102	54	11	3	29	1.54
15720265--15720669	59	6.7	59	86	7	523	33	13	7	45	1.73
15720824--15720854	5	6.2	5	92	0	53	3	41	35	19	1.67
15721137--15721174	20	1.9	20	94	0	67	23	18	26	31	1.97
15721138--15721182	20	2.3	20	88	3	65	26	22	24	26	2.00
15725720--15725783	24	2.8	24	86	9	80	35	10	9	43	1.72
15726881--15726937	26	2.3	26	82	11	66	54	3	0	42	1.17
15727162--15727208	16	2.9	17	84	9	62	34	2	0	63	1.06
15732099--15732161	30	2.1	30	84	3	81	68	0	22	9	1.18
15732120--15732167	21	2.2	22	85	3	62	64	0	27	8	1.22
15738304--15738354	16	3.2	16	80	2	50	9	21	0	68	1.18
15738470--15738518	22	2.3	22	86	6	66	57	4	8	30	1.47
15739376--15739433	16	3.7	16	74	2	55	12	5	24	58	1.54
15740220--15740282	33	1.9	33	86	0	90	41	26	3	28	1.71
15741217--15741246	15	1.9	16	93	6	53	33	16	6	43	1.74
15742826--15742865	19	2.1	19	100	0	80	42	17	10	30	1.82
15743705--15743743	21	1.9	20	89	5	60	71	2	17	7	1.21
15759572--15759942	188	2.0	188	90	2	586	38	10	8	42	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15761506--15761552	23	2.0	23	87	0	67	44	2	4	48	1.34
15762643--15762693	25	2.0	25	92	0	84	23	23	7	45	1.79
15765685--15765777	39	2.4	39	89	7	136	40	15	8	35	1.77
15768382--15768445	32	2.0	32	93	0	110	50	10	3	35	1.54
15774735--15774762	2	14.0	2	100	0	56	50	0	0	50	1.00
15775867--15775904	20	2.0	20	85	10	53	26	0	2	71	1.00
15784837--15784881	6	7.7	6	87	5	56	17	4	13	64	1.44
15787353--15787379	2	13.5	2	100	0	54	48	0	0	51	1.00
15793355--15793470	58	2.0	58	96	0	214	38	7	19	33	1.81
15798187--15798317	66	2.0	67	84	4	176	38	18	9	34	1.82
15802759--15802789	11	2.8	11	95	0	53	51	6	9	32	1.60
15803524--15803572	22	2.1	22	85	7	62	48	2	4	44	1.33
15805601--15805630	15	1.9	16	93	6	53	80	3	3	13	0.97
15807565--15807627	29	2.2	29	79	0	72	34	6	15	42	1.73
15808535--15808575	21	2.0	21	85	0	55	29	14	12	43	1.82
15811637--15811690	15	3.6	15	74	0	54	29	20	3	46	1.68
15814239--15814303	31	2.1	31	97	2	123	21	13	15	49	1.79
15817876--15817958	42	2.0	42	90	4	132	44	6	18	31	1.73
15818281--15818521	47	5.1	47	82	5	295	32	17	11	38	1.85
15818842--15818881	20	2.0	20	90	0	62	55	15	7	22	1.65
15819319--15819373	25	2.2	26	96	3	103	25	0	18	56	1.42
15819615--15819679	31	2.1	31	94	0	112	44	9	12	33	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15829385--15829447	26	2.4	26	97	0	117	60	3	7	28	1.40
15829978--15830076	34	2.9	34	82	5	103	43	12	11	33	1.77
15832666--15832793	61	2.1	62	83	2	168	53	12	5	28	1.61
15833043--15833092	15	3.3	15	78	18	50	66	0	4	30	1.10
15833194--15833246	17	3.1	18	78	15	58	64	9	0	26	1.24
15835877--15835936	13	4.8	11	76	21	57	6	13	0	80	0.91
15835888--15835934	22	2.1	22	84	7	60	8	14	0	76	1.01
15837682--15837758	37	2.1	37	92	0	127	45	2	14	37	1.59
15837702--15837761	19	3.2	19	75	13	70	45	3	13	38	1.60
15837702--15837761	17	3.4	17	68	20	50	45	3	13	38	1.60
15840017--15840054	20	1.9	20	84	10	51	13	5	2	78	1.02
15843681--15843807	63	2.0	63	93	0	218	34	16	18	29	1.93
15844824--15844870	24	1.9	24	82	4	58	40	6	8	44	1.60
15852397--15852421	11	2.3	11	100	0	50	16	16	8	60	1.58
15854819--15854862	22	2.0	21	86	4	61	34	20	9	36	1.84
15854896--15855247	58	6.1	58	74	5	248	23	23	13	40	1.90
15854897--15855249	116	3.0	115	77	7	320	23	22	13	40	1.89
15855421--15855551	65	2.0	65	83	5	167	32	18	11	38	1.86
15859088--15859113	8	3.2	8	100	0	52	76	0	11	11	1.01
15859704--15859736	6	5.5	6	100	0	66	36	48	0	15	1.45
15864831--15864877	21	2.2	21	96	0	85	38	21	8	31	1.83
15866834--15866876	3	14.3	3	85	0	59	27	2	4	65	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15866991--15867045	21	2.5	22	82	8	69	65	3	0	30	1.10
15868080--15868125	23	2.0	23	87	8	67	8	41	0	50	1.33
15868340--15868375	18	1.9	19	88	5	56	22	5	16	55	1.62
15869005--15869054	23	2.2	23	82	7	57	18	10	28	44	1.81
15872767--15872858	47	2.0	47	95	0	166	55	5	0	39	1.23
15872802--15872856	28	2.0	29	85	7	78	54	5	0	40	1.23
15872792--15872859	27	2.5	27	79	9	75	58	4	0	36	1.18
15874464--15874515	21	2.5	21	93	6	88	25	26	9	38	1.86
15884225--15884299	36	2.1	35	90	5	114	46	2	5	45	1.40
15885071--15885104	2	17.0	2	100	0	68	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109