genome.fa.s35.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  28  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4818187--4818254	18	3.7	19	76	11	61	33	4	11	50	1.59
4820485--4820536	20	2.6	20	87	0	77	42	11	21	25	1.86
4821024--4821065	18	2.3	19	88	12	61	23	11	0	64	1.27
4821084--4821134	21	2.4	21	80	6	59	66	5	5	21	1.35
4821122--4821203	4	20.2	4	72	16	62	68	6	2	23	1.24
4822249--4822306	22	2.7	22	81	2	73	43	0	29	27	1.55
4823774--4823811	15	2.5	15	95	0	67	44	0	21	34	1.52
4825383--4825428	22	2.1	22	84	8	58	39	15	15	30	1.88
4826863--4826899	14	2.5	15	86	8	58	5	5	0	89	0.60
4829029--4829113	19	4.8	18	78	16	63	72	0	7	20	1.07
4829047--4829114	5	13.0	5	79	14	75	75	0	5	19	1.01
4829047--4829110	24	2.7	24	84	15	80	75	0	6	18	1.01
4829861--4829907	16	2.9	16	76	14	51	70	4	6	19	1.26
4829866--4829910	18	2.4	18	82	14	56	73	2	4	20	1.11
4830259--4830305	18	2.6	18	89	0	67	38	17	14	29	1.89
4830274--4830558	86	3.3	86	79	4	245	35	14	18	31	1.91
4830553--4830595	19	2.3	19	87	0	59	46	11	13	27	1.78
4830595--4830645	17	3.0	17	82	0	57	41	13	11	33	1.81
4830613--4830881	19	14.9	17	72	9	92	45	14	12	27	1.80
4830613--4830888	91	3.0	91	80	4	272	45	14	12	27	1.81
4830553--4830888	36	9.2	38	69	10	166	45	13	12	28	1.81
4830518--4830771	127	2.0	128	81	5	300	42	12	14	30	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4832342--4832371	8	3.9	8	91	8	53	10	0	0	90	0.47
4832343--4832371	15	1.9	15	100	0	58	10	0	0	89	0.48
4839149--4839184	15	2.5	14	90	4	54	52	0	2	44	1.15
4841961--4842005	1	45.0	1	81	0	54	0	4	4	91	0.52
4841961--4842005	20	2.2	21	88	4	65	0	4	4	91	0.52
4842462--4842495	2	17.0	2	100	0	68	50	0	0	50	1.00
4848080--4848118	4	9.8	4	100	0	78	0	25	0	74	0.82
4857581--4857625	15	2.9	16	87	9	58	31	0	0	68	0.89
4858002--4858053	21	2.5	21	90	6	79	50	0	0	50	1.00
4858002--4858053	22	2.5	22	93	6	90	50	0	0	50	1.00
4858026--4858091	30	2.2	31	83	2	80	56	1	0	42	1.08
4866852--4866910	30	2.0	30	89	0	91	18	6	42	32	1.77
4870492--4870532	17	2.7	15	82	17	50	29	4	0	65	1.13
4870479--4870524	22	2.1	22	84	8	58	34	6	0	58	1.24
4870516--4870542	4	6.8	4	100	0	54	22	0	0	77	0.76
4871129--4871168	15	2.6	15	88	4	53	72	2	5	20	1.15
4871508--4871552	12	3.6	12	81	6	54	40	2	6	51	1.41
4872150--4872253	29	3.5	30	82	3	113	37	5	0	56	1.23
4872632--4872690	30	2.0	30	83	6	75	40	15	0	44	1.46
4874066--4874122	25	2.3	25	90	0	87	59	3	3	33	1.31
4875588--4875653	32	2.0	33	82	8	82	46	13	7	31	1.71
4879568--4879599	16	2.0	16	100	0	64	6	25	37	31	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4881522--4881592	24	3.2	24	62	22	64	33	21	19	25	1.97
4881511--4881594	42	2.0	42	100	0	168	33	21	19	26	1.97
4885883--4885923	18	2.3	18	95	0	73	26	0	2	70	0.99
4885928--4886002	32	2.3	30	80	14	87	57	1	0	41	1.07
4886371--4886423	25	2.3	23	81	15	56	43	1	0	54	1.11
4886931--4886972	19	2.2	20	87	12	61	54	0	0	45	0.99
4886986--4887062	28	2.8	27	79	13	68	46	2	0	50	1.15
4886978--4887051	31	2.5	28	77	16	76	43	1	1	54	1.17
4892226--4892256	15	2.1	15	93	0	53	35	3	3	58	1.31
4898738--4898981	59	4.1	58	81	8	269	45	5	9	39	1.60
4898715--4898980	123	2.2	121	79	12	312	45	4	10	40	1.58
4902841--4902904	32	2.0	32	90	3	103	64	10	4	20	1.43
4910258--4910293	2	18.0	2	94	0	63	47	0	2	50	1.15
4924494--4924541	3	16.0	3	95	0	87	33	2	0	64	1.05
4925087--4925159	18	4.1	18	76	0	83	50	4	1	43	1.29
4929215--4929262	25	2.0	23	84	8	60	50	6	4	39	1.47
4933122--4933225	38	2.8	38	84	7	117	39	20	6	33	1.79
4938200--4938576	148	2.6	146	80	5	379	51	7	17	23	1.71
4938569--4938599	15	2.1	14	94	5	53	74	9	9	6	1.23
4939685--4939802	63	1.9	63	85	1	166	44	13	11	30	1.80
4940905--4940956	27	1.9	27	88	0	77	21	3	7	67	1.32
4941019--4941058	21	2.0	20	90	5	62	80	2	2	15	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4941384--4941408	12	2.1	12	100	0	50	56	16	0	28	1.41
4941909--4941964	3	19.3	3	82	14	64	64	0	3	32	1.11
4941996--4942042	21	2.2	21	80	0	58	31	29	17	21	1.96
4942633--4943022	86	4.6	86	78	5	366	37	11	17	33	1.85
4942653--4942961	166	1.9	166	84	1	413	37	11	17	34	1.85
4942939--4942984	17	2.6	18	82	3	67	39	10	13	36	1.79
4943462--4943772	120	2.6	120	81	5	358	44	13	21	20	1.86
4944948--4944999	17	3.1	17	83	8	63	7	1	3	86	0.76
4944948--4944999	8	6.4	8	84	4	68	7	1	3	86	0.76
4948680--4948726	21	2.2	22	96	3	87	27	8	4	59	1.45
4949687--4949768	3	28.3	3	78	11	82	65	0	4	29	1.13
4950559--4950610	24	2.3	22	83	9	61	55	5	9	28	1.55
4951039--4951097	22	2.7	21	78	19	59	37	22	11	28	1.89
4951175--4951443	22	11.8	22	68	19	144	34	16	14	34	1.89
4951039--4951423	162	2.4	162	93	2	659	35	16	14	33	1.89
4951334--4951443	22	5.0	22	88	2	166	34	17	11	36	1.86
4951341--4951469	44	2.9	43	83	10	120	32	17	11	37	1.86
4951659--4951698	21	2.0	19	90	9	62	80	17	2	0	0.83
4951972--4952047	36	2.1	35	83	7	91	65	1	6	26	1.24
4955022--4955082	22	2.7	23	80	7	72	29	22	11	36	1.90
4955264--4955323	25	2.5	24	73	7	59	81	6	8	3	0.96
4955564--4955597	3	11.3	3	93	0	59	29	0	2	67	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4955667--4955708	15	3.0	14	80	10	50	76	2	7	14	1.10
4958081--4958120	21	2.0	21	90	5	64	47	5	7	40	1.54
4963081--4963292	108	2.0	109	82	0	264	29	14	10	44	1.79
4963671--4963745	29	2.7	29	83	8	84	50	1	1	46	1.18
4965200--4965229	4	7.2	4	92	7	51	50	0	0	50	1.00
4969348--4969393	14	3.4	14	85	8	60	2	13	6	78	1.04
4969798--4969833	2	18.0	2	100	0	72	50	0	0	50	1.00
4975838--4975882	23	1.9	24	86	4	65	28	8	0	62	1.25
4977437--4977489	22	2.4	22	93	6	90	49	0	0	50	1.00
4980405--4980454	21	2.4	21	83	6	66	32	6	48	14	1.67
4989204--4989233	15	2.0	15	100	0	60	46	0	0	53	1.00
4989741--4989767	12	2.2	12	100	0	54	37	11	7	44	1.68
4992525--4992874	173	2.0	172	81	6	404	45	8	7	38	1.63
4992728--4993158	179	2.4	180	83	3	492	41	6	9	41	1.64
4993449--4993495	18	2.7	18	80	12	62	40	10	4	44	1.59
4993454--4994099	181	3.6	178	77	8	617	38	10	8	42	1.71
4994892--4994954	27	2.3	27	80	0	72	38	31	3	26	1.72
4998134--4998158	3	8.3	3	100	0	50	68	0	0	32	0.90
5001102--5001156	22	2.4	23	93	6	94	49	0	0	50	1.00
5004712--5004753	16	2.8	15	85	7	50	35	0	0	64	0.94
5004782--5004854	30	2.5	29	88	4	103	60	0	2	36	1.11
5010757--5010782	11	2.4	11	100	0	52	0	7	0	92	0.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5011228--5011281	27	1.9	28	92	7	92	62	20	7	9	1.48
5013292--5013326	3	11.7	3	93	0	61	65	2	0	31	1.07
5018015--5018049	17	2.1	17	88	0	52	71	0	17	11	1.14
5018448--5018482	2	17.5	2	100	0	70	51	0	48	0	1.00
5020478--5023376	35	82.4	35	68	13	386	54	12	13	18	1.70
5020946--5021356	69	5.9	71	75	9	249	55	12	13	18	1.68
5021120--5021948	69	12.0	67	71	13	226	54	12	14	18	1.70
5020945--5022369	104	13.6	104	72	11	398	54	12	14	18	1.71
5020925--5021447	243	2.1	244	79	6	608	54	12	14	19	1.71
5021572--5021704	72	1.9	70	85	6	187	59	13	13	13	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109