genome.fa.s35.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  18  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2904263--2904303	21	2.0	21	85	9	57	56	0	0	43	0.99
2906764--2906793	3	10.0	3	100	0	60	33	0	0	66	0.92
2907794--2907826	11	3.1	11	86	4	50	69	0	0	30	0.88
2908752--2908777	10	2.6	10	100	0	52	46	0	0	53	1.00
2910720--2911152	215	2.0	215	97	0	814	37	8	17	36	1.81
2913904--2913938	12	2.9	12	91	0	52	74	11	11	2	1.18
2914629--2914867	84	2.9	83	80	7	256	37	14	14	33	1.87
2914683--2914972	84	3.5	84	77	6	248	38	15	14	31	1.87
2914829--2915089	83	3.1	83	80	6	296	40	17	14	27	1.88
2921409--2921702	103	2.8	102	75	14	285	37	8	8	46	1.63
2923470--2923507	17	2.2	17	86	9	51	71	5	7	15	1.28
2924807--2924877	36	2.0	36	83	8	92	33	4	22	39	1.74
2924818--2924891	36	2.1	35	82	2	85	32	5	18	43	1.73
2925781--2926167	206	1.9	206	83	3	501	39	4	17	38	1.71
2926278--2926303	2	13.0	2	100	0	52	50	0	0	50	1.00
2928784--2928827	21	2.1	21	86	0	61	38	6	9	45	1.63
2930863--2930906	12	3.7	12	81	9	54	34	6	0	59	1.24
2930979--2931044	4	15.2	4	76	17	53	72	4	3	19	1.15
2930979--2931049	22	3.2	22	75	13	74	71	5	2	19	1.18
2931796--2931839	17	2.8	17	78	21	51	81	2	2	13	0.88
2934117--2934163	23	2.0	24	91	4	78	40	8	21	29	1.83
2936124--2936153	13	2.4	13	94	5	53	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2936602--2936628	2	13.5	2	100	0	54	51	0	0	48	1.00
2937878--2937912	13	2.7	13	95	0	61	34	2	0	62	1.10
2938890--2938926	2	20.0	2	84	15	53	45	0	0	54	1.00
2942560--2942605	25	1.9	25	86	8	69	52	4	13	30	1.59
2943368--2943405	12	3.5	11	82	13	51	68	10	0	21	1.19
2943363--2943411	22	2.2	22	82	7	64	65	8	0	26	1.20
2943486--2943531	22	2.0	22	83	4	56	54	2	0	43	1.12
2945838--2945866	14	2.0	15	93	6	51	51	0	0	48	1.00
2949388--2949430	21	2.0	21	95	0	77	32	20	13	32	1.92
2951138--2951195	29	2.0	29	100	0	116	27	24	24	24	2.00
2956853--2956903	26	2.0	26	88	7	77	54	3	9	31	1.51
2956857--2956913	26	2.1	27	83	6	71	56	1	8	33	1.41
2957967--2958049	31	2.8	30	78	14	93	49	0	0	50	1.00
2957975--2958054	41	2.0	39	83	9	99	50	0	0	50	1.00
2958012--2958058	18	2.7	17	79	20	53	48	0	0	51	1.00
2958135--2958209	29	2.5	29	77	12	80	52	4	0	44	1.20
2960178--2960482	139	2.2	139	88	1	450	46	7	10	35	1.66
2965969--2966000	15	2.0	17	88	11	50	25	3	9	62	1.40
2968808--2968856	25	2.0	25	84	8	64	38	16	16	28	1.90
2983050--2983087	2	19.5	2	84	15	53	50	0	2	47	1.15
2983204--2983237	13	2.6	13	86	13	52	52	0	0	47	1.00
2995343--2995388	23	2.0	23	83	8	58	34	0	10	54	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2998575--2998641	28	2.4	28	70	2	64	16	4	13	65	1.42
3004624--3004666	22	2.0	21	82	13	52	41	0	11	46	1.40
3005527--3005560	18	1.9	18	88	5	52	38	8	2	50	1.49
3006049--3006083	12	2.8	12	91	4	52	51	2	5	40	1.40
3006546--3006630	34	2.5	34	83	5	93	56	3	3	36	1.34
3007747--3007777	3	10.3	3	100	0	62	67	0	0	32	0.91
3010279--3010327	20	2.5	20	93	3	82	51	0	0	48	1.00
3014281--3014335	19	2.8	20	80	8	67	34	0	0	65	0.93
3014284--3014335	20	2.6	21	84	9	72	34	0	0	65	0.93
3015870--3015918	25	1.9	25	87	4	71	55	2	0	42	1.11
3017137--3017181	16	2.8	16	82	3	63	73	0	8	17	1.08
3017124--3017174	16	3.3	15	81	10	59	74	1	7	15	1.13
3017124--3017189	16	4.2	14	76	16	51	74	1	6	18	1.10
3018145--3018198	27	2.1	25	86	6	72	81	5	5	7	0.98
3023293--3023343	8	6.5	8	84	4	59	78	3	0	17	0.90
3023293--3023340	15	3.1	15	84	3	60	79	4	0	16	0.89
3024386--3024526	55	2.6	54	85	11	200	57	9	12	20	1.63
3024386--3024551	55	3.2	49	78	13	136	54	10	12	23	1.67
3027043--3027112	30	2.2	31	80	10	79	27	7	4	61	1.41
3028452--3028495	23	2.0	21	91	8	70	31	15	9	43	1.79
3029312--3029363	3	17.3	3	100	0	104	32	0	0	67	0.91
3034443--3035704	331	3.8	332	85	4	1598	36	12	14	36	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3046559--3046598	22	1.9	20	85	10	53	40	2	0	57	1.12
3047602--3047659	23	2.5	24	72	13	59	37	1	0	60	1.07
3047661--3047736	30	2.5	29	79	8	80	38	6	0	55	1.26
3054790--3054911	62	2.0	60	80	7	138	45	5	2	46	1.40
3067040--3067100	23	2.7	23	80	12	65	50	0	1	47	1.10
3067070--3067119	26	2.0	26	88	7	77	54	0	0	46	1.00
3067884--3067933	22	2.4	22	87	9	70	48	0	0	52	1.00
3067969--3068021	17	3.0	17	79	15	54	45	0	0	54	0.99
3070721--3070764	22	2.0	22	83	12	56	47	2	2	47	1.27
3074372--3074408	3	12.3	3	100	0	74	67	0	0	32	0.91
3075261--3075295	2	17.5	2	93	0	61	48	0	2	48	1.16
3076500--3076530	16	1.9	16	93	0	53	58	0	0	41	0.98
3076616--3076671	25	2.3	24	80	17	62	53	7	1	37	1.39
3077366--3077542	80	2.2	80	78	4	205	58	6	8	26	1.53
3081445--3081596	83	1.9	82	91	2	252	31	10	18	39	1.85
3084577--3084622	21	2.1	22	92	4	76	23	23	4	47	1.69
3085197--3085252	21	2.6	21	81	13	53	44	1	3	50	1.29
3088763--3088799	3	12.3	3	100	0	74	67	0	0	32	0.91
3089658--3089692	2	17.5	2	87	0	52	45	2	2	48	1.32
3090888--3090917	15	1.9	16	93	6	53	56	0	0	43	0.99
3091004--3091069	24	2.7	24	77	17	73	53	7	1	37	1.39
3091750--3091942	80	2.4	80	78	0	224	59	6	7	25	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3095827--3095980	83	1.9	82	90	5	249	32	8	20	38	1.82
3098968--3099014	22	2.1	22	100	0	94	25	23	4	46	1.70
3099594--3099653	20	2.8	21	80	14	61	50	1	1	46	1.21
3110964--3111113	74	2.0	74	88	0	219	50	11	8	29	1.68
3112348--3112380	18	1.9	17	88	11	50	54	0	0	45	0.99
3112898--3112927	12	2.4	13	94	5	53	50	0	0	50	1.00
3113230--3113298	24	3.1	24	69	26	78	39	11	11	37	1.78
3113211--3113305	43	2.2	43	88	3	147	43	9	9	37	1.70
3113721--3113758	19	2.1	19	85	5	51	42	2	0	55	1.14
3123929--3123953	11	2.3	11	100	0	50	12	44	0	44	1.41
3125155--3125205	25	2.0	27	84	7	70	49	7	3	39	1.51
3125463--3125503	2	21.5	2	85	9	59	43	2	0	53	1.13
3125463--3125504	18	2.3	18	88	12	68	42	4	0	52	1.22
3125740--3125807	22	3.2	21	65	17	50	38	4	2	54	1.36
3125725--3125809	44	2.0	43	95	2	152	36	4	4	54	1.43
3125725--3125787	22	2.8	23	68	15	60	31	4	6	57	1.45
3133211--3133361	75	2.0	75	85	3	207	50	11	7	29	1.67
3135478--3135546	24	3.1	24	69	26	78	39	11	11	37	1.78
3135459--3135553	43	2.2	43	88	3	147	43	9	9	37	1.70
3146134--3146158	11	2.3	11	100	0	50	12	44	0	44	1.41
3146400--3146433	16	2.1	16	100	0	68	47	5	41	5	1.52
3147352--3147388	12	3.2	12	77	14	51	54	2	0	43	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3147685--3147719	2	17.5	2	93	0	61	45	2	0	51	1.16
3155195--3155249	3	18.3	3	100	0	110	65	0	0	34	0.93
3155356--3155382	3	9.0	3	100	0	54	66	0	0	33	0.92
3161588--3161627	16	2.4	18	80	19	52	65	0	7	27	1.20
3163071--3163127	28	2.0	29	86	6	82	50	0	0	49	1.00
3163408--3163436	5	5.8	5	100	0	58	41	0	58	0	0.98
3166178--3166213	16	2.2	16	90	0	54	33	0	0	66	0.92
3166180--3166223	23	2.0	22	90	4	70	31	0	0	68	0.90
3166768--3167425	259	2.6	256	80	4	738	37	8	10	43	1.70
3171282--3171481	55	3.6	54	78	8	170	34	12	27	25	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109