genome.fa.s35.2.7.7.80.10.50.1000.70.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  70  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13918642--13918681	21	2.0	20	90	5	62	30	12	12	45	1.79
13921601--13921642	17	2.5	17	88	3	68	26	4	4	64	1.33
13922350--13922399	18	2.8	17	82	8	55	12	10	8	70	1.35
13928288--13928378	42	2.2	42	84	9	116	47	8	10	32	1.70
13929522--13929550	2	14.5	2	100	0	58	51	0	0	48	1.00
13931807--13931854	24	2.0	24	87	0	69	29	14	22	33	1.94
13932966--13932990	2	12.5	2	100	0	50	0	0	48	52	1.00
13943105--13943149	21	2.1	21	91	0	72	33	0	24	42	1.55
13943070--13943183	14	8.4	14	66	16	51	22	0	31	45	1.53
13943136--13943183	7	6.9	7	78	0	51	16	0	37	45	1.48
13947275--13947327	21	2.5	21	81	9	63	60	3	1	33	1.26
13947356--13947381	13	2.0	13	100	0	52	53	0	15	30	1.42
13947850--13947937	44	2.0	44	90	0	140	30	18	18	32	1.95
13951101--13951142	20	2.0	20	86	9	57	64	4	16	14	1.45
13953761--13953834	38	1.9	38	86	8	105	35	12	20	32	1.89
13954249--13954385	42	3.3	41	76	9	134	36	10	10	41	1.76
13958972--13959005	12	2.8	12	91	8	52	5	8	0	85	0.75
13959023--13959056	13	2.5	13	85	4	50	0	17	0	82	0.67
13961803--13961928	63	2.0	63	96	3	236	55	14	9	20	1.67
13967717--13967749	17	1.9	17	93	0	57	48	24	0	27	1.51
13970532--13970585	28	1.9	28	85	7	74	5	16	7	70	1.30
13970776--13970807	14	2.3	14	100	0	64	6	0	6	87	0.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13987825--13987853	14	2.1	14	100	0	58	20	20	13	44	1.85
14001013--14001042	15	1.9	16	93	6	53	30	0	10	60	1.30
14001172--14001211	17	2.4	17	91	8	64	35	5	7	52	1.51
14001790--14001827	18	2.0	20	85	10	53	60	7	5	26	1.46
14002252--14002288	19	1.9	19	88	0	56	16	0	21	62	1.33
14002271--14002305	14	2.5	14	85	0	52	20	0	22	57	1.41
14002304--14002337	17	2.0	17	94	0	59	14	5	41	38	1.70
14003756--14003982	113	2.0	112	91	3	368	43	11	7	37	1.71
14003789--14003996	111	1.9	112	88	6	287	44	12	7	36	1.69
14006635--14006728	6	15.7	6	73	8	75	27	2	5	64	1.26
14007837--14007963	14	9.3	13	71	12	69	17	3	3	75	1.08
14007839--14007920	33	2.5	32	77	11	87	12	4	6	76	1.12
14007916--14007963	15	3.3	15	88	5	71	25	0	0	75	0.81
14009477--14009506	15	2.1	14	93	6	51	50	0	0	50	1.00
14012743--14012785	19	2.3	19	87	0	59	86	0	11	2	0.67
14014196--14014289	46	2.1	45	81	2	107	36	8	10	44	1.70
14014205--14014304	45	2.2	45	78	7	112	36	10	11	43	1.74
14014637--14014719	35	2.4	35	81	0	85	36	13	12	38	1.82
14014751--14014797	17	2.9	16	81	12	51	44	17	4	34	1.68
14014935--14014971	19	1.9	19	88	0	56	35	13	8	43	1.74
14015428--14015483	29	1.9	29	82	7	69	28	1	7	62	1.32
14015427--14015496	35	2.0	35	83	5	88	31	1	8	58	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14015427--14015483	6	9.8	6	81	7	55	29	1	7	61	1.32
14017007--14017072	23	3.0	23	78	17	86	33	4	10	51	1.57
14017007--14017075	21	3.2	21	75	16	79	33	4	10	52	1.55
14018580--14018694	46	2.5	45	83	5	131	53	12	11	23	1.70
14022550--14022609	26	2.4	25	89	8	88	53	0	0	46	1.00
14023293--14023348	24	2.3	25	84	6	78	41	7	0	51	1.29
14023529--14023559	15	2.1	15	93	0	53	0	16	3	80	0.83
14030818--14030903	27	3.2	27	81	0	91	34	38	6	19	1.79
14035868--14035950	39	2.1	39	93	0	139	20	2	42	34	1.65
14035919--14035973	26	2.1	26	96	0	101	23	0	40	36	1.55
14045102--14045141	12	3.4	12	79	6	55	65	15	5	15	1.44
14045171--14045198	13	2.2	13	100	0	56	17	21	28	32	1.96
14048748--14048780	17	1.9	17	88	11	50	54	0	3	42	1.15
14048721--14048774	27	2.0	27	82	7	65	48	0	3	48	1.19
14056959--14057016	4	15.0	4	74	13	50	17	1	1	79	0.90
14056931--14057016	8	11.4	7	75	16	59	17	3	1	77	0.96
14056932--14057021	17	5.2	16	72	16	56	18	3	1	76	0.98
14056935--14057005	13	5.3	13	71	17	56	16	4	1	77	1.00
14057096--14057178	25	3.3	25	83	8	89	26	1	10	61	1.36
14057109--14057186	13	6.2	13	76	8	81	28	0	10	61	1.28
14057117--14057297	24	7.7	24	68	20	80	29	2	11	56	1.47
14057206--14057297	47	2.0	47	82	8	116	29	3	10	56	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14057205--14057279	23	3.2	23	74	7	71	29	4	10	56	1.52
14058267--14058401	72	1.9	72	80	6	157	44	8	12	34	1.72
14064645--14065188	203	2.7	200	87	3	729	34	12	11	42	1.79
14065031--14065343	155	2.0	155	100	0	626	34	13	10	40	1.80
14064830--14065519	358	1.9	356	92	1	1166	33	14	11	40	1.82
14066365--14066469	26	4.1	26	72	8	99	20	6	18	55	1.64
14066684--14066724	16	2.5	17	80	11	50	29	2	0	68	1.03
14067225--14067258	12	2.9	12	91	4	52	35	0	0	64	0.94
14074632--14074764	68	1.9	69	86	7	191	24	8	16	51	1.72
14074922--14075045	64	2.0	63	85	1	167	41	8	13	37	1.74
14075053--14075285	21	11.3	21	72	11	162	42	7	12	36	1.71
14075014--14075234	99	2.2	101	82	8	263	44	8	11	35	1.71
14075110--14075166	19	2.9	19	81	2	60	45	8	12	33	1.72
14075110--14075147	20	2.0	20	89	5	60	39	7	13	39	1.73
14075095--14075289	103	1.9	105	87	6	288	43	8	12	35	1.73
14074871--14075298	43	10.3	42	70	12	149	42	8	12	37	1.72
14075083--14075289	64	3.3	65	80	6	196	42	8	12	36	1.73
14086057--14086087	16	1.9	16	100	0	62	25	0	0	74	0.82
14086131--14086182	18	2.8	19	79	5	61	30	0	9	59	1.29
14086350--14086409	19	3.2	18	75	13	50	35	1	8	55	1.40
14086357--14086418	19	3.3	18	76	12	54	33	3	8	54	1.46
14086365--14086418	18	2.9	18	81	10	65	33	3	9	53	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14089330--14089395	24	3.1	24	64	32	67	34	6	9	50	1.59
14089317--14089395	40	2.0	40	100	0	158	34	5	10	50	1.58
14089373--14089418	16	2.9	15	81	9	56	36	2	6	54	1.39
14092879--14092903	2	12.5	2	100	0	50	52	0	0	48	1.00
14093139--14093187	24	2.0	24	100	0	98	8	12	12	67	1.42
14093645--14093678	17	2.0	17	88	0	50	35	14	8	41	1.77
14114601--14114666	24	3.1	24	64	32	67	34	6	9	50	1.59
14114591--14114666	40	1.9	40	100	0	152	32	5	10	51	1.59
14114644--14114688	15	2.9	15	80	3	54	37	2	6	53	1.40
14118419--14118467	24	2.0	24	100	0	98	8	12	12	67	1.42
14118923--14118956	17	2.0	17	88	0	50	35	14	8	41	1.77
14150934--14150974	21	1.9	22	85	5	57	41	9	14	34	1.79
14155527--14155592	24	2.8	24	88	2	98	69	6	7	16	1.32
14155528--14155592	16	4.1	16	72	20	55	69	6	7	16	1.33
14163133--14163276	78	1.8	78	95	0	261	22	9	6	62	1.47
14164158--14164190	16	2.0	17	88	5	50	51	3	6	39	1.42
14181385--14181449	20	3.2	20	91	4	96	53	12	4	29	1.58
14183174--14183266	39	2.4	39	87	0	123	49	10	5	34	1.60
14183483--14183519	18	2.1	18	89	0	56	81	2	2	13	0.92
14184546--14184711	38	4.4	38	80	13	175	37	17	12	32	1.87
14185037--14185107	14	5.4	14	75	13	60	42	11	21	25	1.86
14185071--14185117	23	2.0	23	95	0	85	44	10	21	23	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14190741--14190813	20	3.7	20	84	0	92	57	13	2	26	1.50
14190798--14190980	13	14.4	13	67	27	58	51	10	5	31	1.59
14190771--14190931	37	4.5	37	85	9	203	54	10	5	29	1.58
14190771--14190931	71	2.3	71	84	10	197	54	10	5	29	1.58
14190920--14190980	30	2.2	26	85	11	77	47	11	6	34	1.66
14191629--14191666	20	1.9	20	88	0	58	71	21	0	7	1.11
14200939--14200981	16	2.6	16	85	10	52	20	9	2	67	1.30
14213361--14213417	29	1.9	30	85	3	80	35	0	8	56	1.31
14213340--14213424	30	2.9	29	79	8	82	35	0	7	57	1.26
14213789--14213835	19	2.5	19	76	10	53	53	4	4	38	1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109