genome.fa.s35.2.7.7.80.10.50.1000.67.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  67  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13343480--13343597	21	5.6	19	84	15	73	27	2	0	69	1.01
13343498--13343599	9	10.4	10	87	11	94	30	0	0	68	0.96
13343502--13343599	6	16.7	6	91	7	134	30	1	0	68	0.97
13346374--13346428	7	7.9	7	86	8	76	16	23	1	58	1.48
13346378--13346435	21	2.8	21	83	0	71	15	20	1	62	1.42
13346426--13346457	6	5.3	6	100	0	64	15	0	0	84	0.63
13347541--13347575	2	17.5	2	100	0	70	48	0	0	51	1.00
13352755--13352815	9	6.8	9	69	0	50	39	0	6	54	1.27
13352773--13352834	27	2.3	27	86	2	90	43	0	8	48	1.32
13352758--13352806	18	2.7	18	100	0	98	38	0	8	53	1.31
13359286--13359476	98	1.9	98	95	0	346	40	12	7	39	1.71
13359890--13359975	36	2.4	36	84	5	111	41	6	23	27	1.80
13359978--13360080	48	2.1	48	87	3	145	35	4	28	31	1.78
13360795--13360852	23	2.5	23	88	0	98	72	6	13	6	1.26
13360795--13360852	11	5.0	12	83	8	84	72	6	13	6	1.26
13362625--13362695	30	2.4	30	82	0	88	39	1	30	28	1.65
13363009--13363038	15	1.9	16	93	6	53	40	0	26	33	1.57
13365754--13365854	50	2.0	50	98	0	193	27	13	10	47	1.77
13368417--13368447	16	1.9	16	93	0	53	87	0	12	0	0.55
13376570--13376620	23	2.3	22	83	12	68	52	3	13	29	1.58
13379137--13379162	5	5.2	5	100	0	52	0	19	0	80	0.71
13380240--13380325	42	2.0	42	100	0	172	24	17	2	55	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13380792--13380834	7	5.9	7	81	8	50	2	13	4	79	1.00
13384152--13386526	800	3.0	798	82	4	2798	37	12	15	34	1.86
13388066--13388219	68	2.3	68	92	5	251	36	9	13	40	1.76
13389296--13389424	42	3.1	42	81	4	129	20	13	14	50	1.77
13390238--13390314	18	4.8	17	69	25	60	51	9	6	32	1.59
13390238--13390314	31	2.4	32	93	2	129	51	9	6	32	1.59
13399019--13399083	31	2.1	31	94	0	112	41	7	16	33	1.77
13399270--13399422	61	2.4	61	82	8	182	43	13	9	32	1.77
13399202--13399422	65	3.5	63	74	12	186	45	12	10	30	1.76
13400316--13400364	16	2.9	17	84	6	64	10	12	0	77	0.99
13400314--13400363	18	2.9	17	78	3	55	8	12	0	80	0.92
13401109--13401154	24	1.9	24	90	0	74	43	0	0	56	0.99
13401487--13401532	23	2.0	24	82	4	58	45	2	2	50	1.26
13401488--13401540	28	1.9	27	85	11	72	47	1	1	49	1.23
13406135--13406176	21	2.0	21	95	0	75	45	9	2	42	1.49
13407703--13407733	14	2.1	15	94	5	55	0	6	70	22	1.09
13408026--13408062	20	1.9	20	88	5	58	37	0	5	56	1.22
13408287--13408335	25	1.9	26	91	4	82	46	2	10	40	1.49
13412132--13412256	18	6.9	18	66	17	80	32	35	4	28	1.78
13412159--13412257	33	2.9	35	77	10	114	35	31	5	28	1.79
13413907--13413947	20	2.0	21	86	13	59	39	24	2	34	1.69
13415761--13415852	27	3.4	27	86	4	123	38	35	3	22	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13417114--13417169	25	2.2	26	90	6	87	26	17	16	39	1.91
13425858--13425952	7	14.0	7	79	8	72	78	0	4	16	0.89
13425859--13425952	21	4.6	21	78	10	81	78	0	4	17	0.90
13425859--13425952	35	2.7	34	81	4	109	78	0	4	17	0.90
13425912--13425968	26	2.2	25	78	3	60	71	0	7	21	1.08
13427406--13427834	43	10.0	43	77	5	316	26	13	16	44	1.84
13427406--13427834	86	5.0	86	80	5	440	26	13	16	44	1.84
13427406--13427831	173	2.5	171	78	6	466	26	13	15	44	1.83
13428174--13428206	12	2.8	12	95	0	57	63	15	9	12	1.51
13431838--13431865	2	14.0	2	100	0	56	50	0	0	50	1.00
13442355--13442428	34	2.2	33	83	9	87	67	2	6	22	1.27
13444247--13444274	2	14.0	2	100	0	56	50	0	0	50	1.00
13444623--13444652	15	2.0	15	93	0	51	20	3	0	76	0.92
13445289--13445333	23	2.0	23	86	0	63	71	4	20	4	1.21
13449617--13449745	38	3.4	38	75	10	102	37	11	16	34	1.85
13449986--13450038	22	2.4	22	100	0	106	47	18	9	24	1.78
13450543--13450653	21	5.0	23	71	14	97	36	8	8	46	1.63
13450543--13450742	21	8.8	21	66	23	70	35	7	11	45	1.69
13450543--13450670	45	2.9	45	75	14	140	35	8	8	46	1.65
13451005--13451045	21	1.9	22	90	5	66	26	17	9	46	1.79
13451127--13451211	22	4.0	22	65	17	52	30	10	15	43	1.80
13451124--13451244	64	1.9	64	85	0	170	35	10	13	40	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13451174--13451219	22	2.1	22	83	0	56	34	13	15	36	1.86
13451118--13451253	64	2.1	64	80	0	164	36	10	11	41	1.76
13451229--13451273	21	2.1	21	84	8	56	40	15	4	40	1.67
13457589--13457613	2	12.5	2	100	0	50	52	48	0	0	1.00
13463841--13463879	9	4.0	9	81	18	51	71	0	12	15	1.14
13463842--13463882	21	2.0	21	100	0	82	68	0	12	19	1.21
13464582--13464628	21	2.3	22	85	10	64	21	0	21	57	1.41
13464877--13464926	21	2.5	20	87	6	82	42	40	0	18	1.50
13464941--13464987	14	3.4	14	87	0	76	42	34	0	23	1.54
13464941--13464987	7	6.7	7	78	9	51	42	34	0	23	1.54
13465799--13465871	37	2.0	36	81	7	85	49	1	0	49	1.09
13468520--13468551	16	1.9	17	93	6	57	40	0	0	59	0.97
13470277--13470313	8	4.5	8	90	6	56	59	0	0	40	0.97
13470277--13470313	17	2.2	16	90	4	56	59	0	0	40	0.97
13475886--13475912	12	2.2	12	100	0	54	40	7	0	51	1.30
13477989--13478159	87	2.0	87	91	0	279	39	18	7	33	1.79
13478173--13480121	162	12.0	159	73	12	949	44	13	8	33	1.74
13478446--13480121	324	5.2	324	79	5	1459	44	13	8	33	1.75
13478287--13479988	647	2.6	646	79	6	1682	44	13	8	33	1.75
13478173--13480151	486	4.1	481	78	7	1579	44	13	8	33	1.74
13478292--13480227	324	6.0	318	77	8	1415	44	13	8	33	1.74
13488430--13488484	26	2.2	24	83	6	65	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13488535--13488580	21	2.2	21	84	0	56	39	0	0	60	0.97
13489384--13489448	32	2.1	31	85	2	85	47	0	0	52	1.00
13489479--13489511	16	2.1	16	88	11	50	33	0	0	66	0.92
13489539--13489573	13	2.7	13	86	0	52	28	0	2	68	1.04
13492125--13492157	17	1.9	17	93	0	57	54	0	0	45	0.99
13492429--13492468	21	1.9	21	84	0	53	37	2	5	55	1.35
13495612--13495642	2	15.5	2	100	0	62	51	0	0	48	1.00
13497313--13497337	2	12.5	2	100	0	50	52	0	0	48	1.00
13499654--13499695	19	2.2	20	95	4	77	21	14	19	45	1.85
13502166--13502244	32	2.5	32	81	2	97	45	10	11	32	1.74
13502877--13502916	20	2.0	21	85	5	55	55	5	0	40	1.22
13503359--13503409	22	2.2	24	86	10	72	41	0	3	54	1.19
13503043--13503527	262	1.8	258	86	7	692	42	4	9	43	1.57
13504606--13504660	27	2.1	25	80	12	58	78	5	7	9	1.10
13505162--13505204	19	2.2	19	84	12	52	62	2	18	16	1.43
13505193--13505234	17	2.4	17	84	4	57	83	0	9	7	0.81
13505982--13506015	16	2.1	16	88	5	50	70	0	5	23	1.09
13505986--13506015	15	1.9	16	93	6	53	70	0	6	23	1.11
13506106--13506151	24	1.9	24	90	0	74	67	4	4	23	1.27
13506095--13506157	32	2.0	31	84	9	83	65	3	6	25	1.32
13506351--13506414	22	2.8	23	83	11	78	79	4	0	15	0.89
13506357--13506405	6	8.0	6	82	8	55	79	6	0	14	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13506373--13506415	21	2.0	21	95	4	77	83	0	0	16	0.64
13510121--13510165	19	2.3	20	81	11	58	40	17	15	26	1.90
13510259--13510286	13	2.2	13	100	0	56	53	14	7	25	1.66
13510634--13510832	46	4.3	46	77	8	138	40	9	9	41	1.68
13510795--13510887	44	2.1	44	83	0	114	31	7	19	41	1.79
13511024--13511088	19	3.4	19	76	0	58	24	7	15	52	1.69
13511124--13511180	22	2.6	22	82	0	78	31	10	17	40	1.84
13513467--13513526	30	2.0	31	87	9	88	21	5	0	73	1.02
13513468--13513524	14	3.9	14	73	22	55	22	5	0	71	1.05
13514828--13514858	13	2.4	13	94	0	53	32	0	0	67	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109