genome.fa.s35.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  6  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
890365--890446	21	4.0	20	74	6	65	37	13	8	40	1.75
905817--905924	55	2.0	55	90	3	173	22	21	15	40	1.91
910643--910678	18	1.9	18	88	5	54	77	2	2	16	1.00
911795--911829	17	2.1	17	89	10	54	45	0	0	54	0.99
911812--911870	24	2.5	22	75	17	57	57	1	3	37	1.25
911957--912006	19	2.5	19	83	6	55	40	4	4	52	1.39
912915--912954	12	3.2	13	89	10	66	75	0	0	25	0.81
912919--912958	13	3.2	13	82	13	57	75	0	0	25	0.81
913618--913658	16	2.6	16	84	0	64	46	4	2	46	1.37
913744--913780	19	2.0	19	89	5	58	64	0	0	35	0.94
913898--913937	11	3.5	11	86	6	53	72	5	0	22	1.04
914571--914655	42	2.0	42	97	0	161	27	17	20	35	1.95
914894--914938	15	3.2	14	78	9	56	60	0	0	40	0.97
918787--918814	2	14.0	2	100	0	56	50	0	0	50	1.00
929543--929593	20	2.4	21	78	15	52	56	0	1	41	1.10
929572--929601	16	1.9	15	93	6	51	46	0	0	53	1.00
931795--931835	21	1.9	20	85	14	55	46	0	4	48	1.23
933007--933041	3	11.7	3	100	0	70	34	0	0	65	0.93
933041--933066	3	8.7	3	100	0	52	0	0	34	65	0.93
937479--937670	39	4.9	39	73	5	113	38	16	21	23	1.93
938761--938811	25	2.0	25	100	0	102	35	21	15	27	1.94
941498--941538	2	20.5	2	100	0	82	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
948760--948806	21	2.2	21	88	7	69	17	6	0	76	0.98
950451--950487	6	6.5	6	84	12	51	16	0	2	81	0.81
950451--950481	16	1.9	16	93	0	53	16	0	3	80	0.83
950451--950520	20	4.1	16	75	21	61	17	2	4	75	1.08
951643--951699	26	2.2	26	81	9	62	29	0	1	68	1.00
951920--952004	30	2.8	31	77	13	79	40	2	1	56	1.20
952098--952131	17	1.9	18	88	5	52	52	2	0	44	1.16
959693--959751	22	2.7	23	79	10	70	35	5	1	57	1.31
960565--960606	19	2.2	20	83	12	52	23	9	16	50	1.75
961330--961405	34	2.2	34	84	9	93	42	10	9	38	1.71
963671--963727	23	2.4	25	88	5	82	50	15	7	26	1.69
963671--963737	25	2.8	24	86	4	82	46	14	8	29	1.76
966778--967364	292	2.0	292	95	0	1048	41	12	8	37	1.73
970950--971001	25	2.1	25	96	0	95	40	7	13	38	1.73
971605--971646	22	2.0	21	86	13	59	54	2	2	40	1.26
971841--971929	23	4.0	22	73	12	74	50	2	0	47	1.13
971850--971882	14	2.4	14	90	5	50	51	0	0	48	1.00
971823--971926	54	1.9	54	83	11	133	51	2	0	44	1.22
971885--971948	14	4.5	14	80	7	67	48	1	1	48	1.20
971907--971946	15	2.7	15	88	3	55	42	0	2	55	1.13
972378--972425	23	2.1	23	84	7	62	27	6	0	66	1.15
972856--972910	27	2.0	27	92	0	92	18	25	21	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
975634--975704	35	2.0	35	94	0	124	38	11	21	29	1.88
979467--979513	20	2.3	20	85	3	58	46	0	2	51	1.13
980373--980413	22	1.9	22	90	5	66	12	31	2	53	1.51
986288--986335	18	2.6	17	78	15	51	39	0	0	60	0.97
988291--988350	22	2.7	22	84	0	84	38	15	11	35	1.83
988494--988539	18	2.6	17	82	6	56	39	4	17	39	1.69
988566--988659	34	2.8	34	77	3	109	35	7	15	41	1.76
988642--988794	33	4.6	32	69	14	103	40	9	16	33	1.81
988930--989085	24	6.9	23	73	14	130	45	16	7	30	1.74
988930--989084	46	3.5	44	77	14	140	45	16	7	30	1.74
988944--989087	69	2.1	69	80	6	168	45	16	6	30	1.74
988873--989079	23	9.0	23	70	16	119	42	16	7	33	1.76
989230--989342	44	2.6	45	80	4	131	41	11	8	38	1.73
989323--989374	21	2.5	20	78	3	59	38	13	7	40	1.73
992029--992343	60	5.3	59	81	9	347	36	11	4	47	1.60
992276--992416	72	2.0	71	84	8	187	39	9	2	48	1.50
992606--993192	45	13.0	44	79	8	518	45	19	10	24	1.82
994188--994236	16	2.9	16	85	8	62	10	6	0	83	0.80
997595--997624	12	2.5	12	88	0	51	30	23	6	40	1.80
1000814--1000843	15	2.1	14	93	6	51	30	0	0	70	0.88
1003203--1003513	58	5.3	58	79	7	324	34	10	5	49	1.60
1003241--1003331	29	3.3	26	67	24	69	34	8	3	53	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1003387--1003620	130	1.8	130	83	7	314	35	10	5	48	1.61
1003446--1003585	72	1.9	72	87	5	203	36	9	4	50	1.54
1003685--1003719	18	1.9	18	94	0	61	48	0	2	48	1.16
1003519--1003747	123	1.9	122	86	8	331	39	9	4	46	1.56
1003500--1003826	59	5.5	59	80	11	362	39	7	4	48	1.53
1005801--1005850	18	2.7	18	71	3	55	44	0	0	56	0.99
1005810--1005867	25	2.4	25	85	2	73	53	0	0	46	1.00
1007444--1007468	13	1.9	13	100	0	50	76	0	0	24	0.80
1007776--1007807	16	1.9	17	93	6	57	75	0	0	25	0.81
1007915--1007971	22	2.5	23	80	11	64	49	0	1	49	1.11
1010232--1010264	16	2.1	15	94	5	57	24	15	6	54	1.63
1010884--1011016	64	2.1	64	90	4	214	16	10	30	42	1.82
1013350--1013490	74	1.9	75	85	5	198	43	11	5	39	1.64
1017088--1017122	17	2.1	17	88	0	52	82	11	2	2	0.88
1020004--1020051	15	3.4	15	83	13	50	72	4	0	22	1.01
1020008--1020051	12	3.6	12	85	11	54	72	4	0	22	1.02
1020490--1020514	13	1.9	13	100	0	50	76	0	0	24	0.80
1020829--1020860	16	1.9	17	93	6	57	75	0	0	25	0.81
1023045--1023076	2	16.0	2	93	0	55	50	0	3	46	1.17
1023897--1024029	64	2.1	64	88	4	205	16	11	30	41	1.83
1026179--1026319	74	1.9	73	82	8	178	43	11	5	39	1.64
1028353--1028714	57	6.1	57	84	11	469	34	13	7	43	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1028311--1028728	122	3.5	118	86	8	507	33	14	7	43	1.74
1028794--1028840	24	2.0	24	86	0	67	82	6	0	10	0.82
1029161--1029198	20	1.9	20	94	0	67	23	18	26	31	1.97
1029162--1029206	20	2.3	20	88	3	65	26	22	24	26	2.00
1029262--1029329	31	2.2	31	86	0	91	27	25	22	25	1.99
1029338--1029390	25	2.1	25	86	6	72	43	16	5	33	1.72
1030063--1030108	6	7.5	6	77	22	51	17	4	0	78	0.91
1032245--1032656	57	7.0	56	83	13	499	34	11	8	45	1.70
1032659--1032730	13	5.4	13	72	20	51	77	1	6	13	1.03
1032671--1032730	27	2.3	26	80	8	68	80	1	5	13	0.96
1032717--1032756	17	2.4	16	84	8	53	72	0	5	22	1.04
1033691--1033915	4	55.2	4	70	15	69	65	2	2	28	1.19
1033698--1033807	3	35.7	3	72	21	61	68	1	0	29	1.06
1033739--1033807	34	2.1	33	88	2	102	71	0	0	28	0.87
1033730--1033836	6	18.2	6	71	19	50	66	2	0	30	1.06
1034110--1034166	21	2.8	20	92	7	89	8	0	5	85	0.72
1034177--1034459	41	6.8	42	87	2	376	36	22	16	24	1.94
1034439--1034479	20	2.0	20	100	0	82	31	24	29	14	1.95
1034397--1034521	62	2.0	62	96	0	232	35	23	21	20	1.96
1034459--1034577	41	2.9	42	88	5	188	36	22	17	23	1.95
1034314--1034577	145	1.8	145	89	1	413	35	21	18	24	1.95
1035776--1035812	18	2.1	18	89	0	56	8	8	0	83	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1035776--1035838	20	3.2	18	80	14	72	7	11	1	79	1.00
1035786--1035838	18	2.9	18	86	8	63	7	11	1	79	1.01
1035791--1035834	21	2.0	21	86	4	61	9	13	2	75	1.14
1039680--1040193	59	8.8	58	88	8	724	35	12	7	44	1.71
1039680--1040183	175	2.9	175	89	5	772	35	12	7	44	1.71
1039680--1040193	234	2.2	230	89	6	777	35	12	7	44	1.71
1040211--1040281	27	2.6	27	81	14	83	78	1	5	14	0.99
1040211--1040281	17	4.1	17	80	10	74	78	1	5	14	0.99
1040207--1040307	17	6.1	16	73	18	55	75	0	6	16	1.07
1041234--1041348	10	9.8	12	70	23	61	67	2	0	28	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109