genome.fa.s35.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  39  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6043008--6043069	23	3.0	21	78	21	76	56	0	0	43	0.99
6043276--6043342	27	2.4	28	92	2	109	32	14	31	20	1.93
6048366--6048396	2	15.5	2	93	0	53	48	0	3	48	1.17
6049471--6049514	2	22.0	2	80	0	52	47	2	4	45	1.35
6053265--6053302	3	12.7	3	100	0	76	68	0	0	31	0.90
6058050--6058166	57	2.1	57	100	0	234	36	18	11	32	1.88
6064459--6064510	13	4.2	13	80	9	63	44	1	0	53	1.11
6064426--6064529	42	2.3	45	81	17	119	40	0	0	57	1.11
6064428--6064553	42	2.9	43	77	15	109	42	0	2	54	1.19
6066148--6066193	21	2.1	22	84	4	58	60	0	0	39	0.97
6066145--6066195	22	2.3	22	80	6	59	60	0	0	39	0.97
6067747--6067781	17	2.1	17	89	5	54	2	5	8	82	0.91
6080155--6080232	39	2.0	39	87	0	111	46	6	23	24	1.75
6080906--6080960	22	2.4	23	82	11	69	52	0	0	47	1.00
6081046--6081088	15	2.8	15	82	6	50	55	4	0	39	1.20
6082381--6082424	20	2.3	20	80	7	56	40	0	4	54	1.21
6082411--6082470	23	2.7	23	75	12	61	43	0	0	56	0.99
6082425--6082462	19	2.1	18	85	14	51	42	0	0	57	0.98
6084255--6084293	12	3.1	12	88	7	51	46	0	2	51	1.14
6085710--6085744	18	1.9	18	88	0	52	20	5	0	74	1.02
6088804--6088851	18	2.7	18	86	0	60	16	0	56	27	1.41
6089113--6089183	27	2.6	27	79	0	79	23	4	54	16	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6089104--6089217	60	1.9	60	87	3	167	21	7	54	17	1.66
6095176--6095204	14	2.1	14	93	6	51	58	0	0	41	0.98
6098922--6098972	23	2.2	24	85	3	68	31	1	5	60	1.31
6106946--6106971	2	13.0	2	100	0	52	50	0	0	50	1.00
6111189--6111227	19	2.1	19	100	0	78	35	15	15	33	1.89
6117353--6117393	21	2.0	21	85	9	57	48	0	0	51	1.00
6117372--6117429	30	1.9	31	86	13	86	56	0	0	43	0.99
6121890--6121937	23	2.1	23	100	0	96	31	4	35	29	1.76
6129649--6129855	100	2.1	100	96	0	378	32	18	16	32	1.94
6143749--6143843	16	5.9	15	74	9	73	21	3	30	45	1.67
6143754--6143843	33	2.8	32	86	5	119	20	2	30	47	1.62
6143754--6143844	32	2.8	32	86	5	121	19	2	29	48	1.61
6144323--6144419	38	2.6	38	88	0	140	13	26	37	22	1.91
6145482--6145526	21	2.1	21	84	15	58	44	4	4	46	1.43
6148201--6148430	118	1.9	118	94	0	406	33	16	21	28	1.95
6153273--6153313	15	2.7	16	85	7	50	7	9	0	82	0.83
6158780--6158812	17	1.9	17	93	0	57	18	9	0	72	1.10
6165589--6165652	31	2.1	31	93	0	110	23	7	21	46	1.77
6166402--6166601	104	1.9	104	89	0	310	42	6	6	45	1.56
6167164--6167214	20	2.7	19	72	6	50	49	9	3	37	1.55
6170092--6170176	26	3.3	24	75	19	66	50	2	0	47	1.14
6170145--6170191	16	2.9	17	78	9	53	53	2	0	44	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6172080--6172125	23	2.0	23	95	0	83	58	0	0	41	0.98
6185223--6185281	18	3.4	17	75	13	50	64	0	1	33	1.04
6185765--6185812	5	9.2	5	84	6	60	33	0	2	64	1.05
6188907--6188932	7	3.7	7	100	0	52	30	0	0	69	0.89
6189136--6189160	7	3.6	7	100	0	50	76	0	0	24	0.80
6191897--6191943	22	2.1	22	100	0	94	27	8	10	53	1.64
6191983--6192073	44	2.1	44	95	4	166	49	10	17	21	1.77
6193497--6193534	6	6.3	6	90	0	58	0	44	0	55	0.99
6194738--6194773	13	2.8	13	87	4	56	72	0	0	27	0.85
6195578--6195614	18	2.2	18	90	9	60	56	2	0	40	1.13
6207452--6207502	24	2.1	24	92	0	84	41	5	1	50	1.37
6207446--6207499	24	2.4	22	80	14	65	42	5	1	50	1.36
6218367--6218411	10	4.5	10	82	17	58	33	0	0	66	0.92
6218427--6218480	21	2.5	21	77	16	58	53	1	0	44	1.11
6223273--6223307	4	8.8	4	100	0	70	77	0	0	22	0.78
6223553--6223592	20	2.0	20	85	0	53	0	32	0	67	0.91
6224068--6224098	7	4.4	7	91	0	53	3	0	9	87	0.66
6224282--6224419	43	3.2	43	86	0	159	44	18	10	25	1.82
6224300--6224494	43	4.5	43	83	1	212	47	14	11	27	1.78
6225513--6225541	9	3.3	9	95	4	51	6	10	0	82	0.83
6234603--6234657	25	2.1	26	83	12	69	36	7	9	47	1.63
6235858--6235917	19	3.2	19	78	4	59	36	28	3	31	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6241392--6241459	23	2.7	26	75	17	70	44	0	0	55	0.99
6242157--6242235	3	26.3	3	100	0	158	32	32	0	34	1.58
6247693--6247788	27	3.8	26	70	15	78	58	1	3	37	1.21
6247730--6247815	24	3.7	24	76	11	72	52	0	1	46	1.08
6247776--6247867	31	3.1	31	80	13	97	46	0	1	52	1.07
6248159--6248244	36	2.4	37	88	5	131	31	46	6	15	1.72
6248281--6248327	21	2.2	21	84	0	58	19	63	6	10	1.47
6248494--6248594	39	2.7	39	87	4	136	15	42	23	17	1.88
6248522--6248596	39	1.9	39	97	0	141	13	42	25	18	1.87
6276423--6276458	2	18.0	2	100	0	72	50	0	0	50	1.00
6277586--6277622	16	2.4	17	86	13	53	0	5	16	78	0.93
6277901--6277944	23	1.9	23	81	9	54	54	0	0	45	0.99
6277927--6277974	6	8.3	6	75	25	50	64	0	0	35	0.94
6277931--6277982	12	4.5	12	77	18	56	63	0	0	36	0.95
6277927--6277982	18	3.2	18	76	19	73	64	0	0	35	0.94
6280719--6280768	20	2.5	21	93	6	86	50	0	0	50	1.00
6281049--6281091	2	21.5	2	100	0	86	48	0	51	0	1.00
6282290--6282386	21	4.8	20	79	2	95	51	12	3	32	1.55
6282292--6282388	42	2.4	42	84	3	126	52	11	3	32	1.53
6282565--6282628	27	2.3	27	86	2	83	35	0	6	57	1.24
6282577--6282629	27	2.0	27	92	0	88	30	0	7	62	1.23
6282577--6282617	12	3.0	14	75	17	50	29	0	7	63	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6282604--6282720	42	2.8	41	74	7	110	35	7	7	48	1.61
6282621--6282724	21	4.9	21	73	13	63	36	9	6	47	1.63
6283143--6283190	22	2.2	22	88	7	71	58	2	4	35	1.29
6283143--6283235	44	2.1	44	80	7	100	53	2	6	37	1.39
6283176--6283277	22	4.6	23	77	8	95	46	1	11	40	1.52
6283174--6283269	44	2.2	44	83	7	115	46	2	11	39	1.52
6283370--6283420	21	2.4	22	86	3	68	37	9	0	52	1.34
6283372--6283420	11	4.5	11	79	5	64	36	8	0	55	1.30
6283372--6283486	22	5.3	22	72	16	78	39	8	0	52	1.33
6284952--6285119	45	3.7	45	90	0	228	29	23	10	35	1.89
6284943--6285136	45	4.3	45	88	0	219	31	23	9	34	1.88
6288332--6288392	30	2.0	30	100	0	122	32	13	13	40	1.82
6289227--6289261	10	3.6	10	88	3	54	91	8	0	0	0.42
6290581--6290608	4	7.0	4	100	0	56	50	0	0	50	1.00
6304229--6304259	16	1.9	16	93	0	53	80	0	19	0	0.71
6308068--6308130	6	10.7	6	72	16	51	46	0	3	50	1.17
6308185--6308257	25	2.9	24	83	8	83	47	0	1	50	1.09
6326169--6326228	26	2.3	27	85	2	77	51	0	0	48	1.00
6332602--6332637	2	18.0	2	100	0	72	0	0	50	50	1.00
6336405--6336435	15	2.1	15	100	0	62	70	9	12	6	1.31
6337856--6337992	62	2.2	62	84	3	177	35	10	16	38	1.82
6337878--6338180	62	4.8	60	73	13	213	36	10	12	39	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6337887--6338180	124	2.4	125	79	9	307	36	10	12	40	1.78
6343553--6343583	3	10.3	3	92	0	53	64	0	32	3	1.09
6349697--6349734	18	2.2	18	85	4	51	44	0	2	52	1.14
6351172--6351339	83	2.0	83	94	0	291	52	5	5	35	1.48
6355234--6355297	21	3.0	21	75	20	60	12	10	0	76	1.02
6355244--6355281	15	2.6	15	87	4	60	13	10	0	76	1.02
6356758--6356895	11	12.9	11	73	19	80	25	0	2	71	1.02
6356792--6356899	4	26.2	4	73	18	57	25	0	1	71	1.02
6356763--6357083	31	11.0	28	68	20	146	27	4	1	67	1.18
6356763--6357062	3	96.3	3	68	23	119	28	4	1	66	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109