genome.fa.s35.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  94  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18906023--18906108	34	2.6	34	85	3	113	51	8	4	36	1.53
18906962--18906986	2	12.5	2	100	0	50	48	0	0	52	1.00
18908345--18908396	27	1.9	27	92	0	86	28	21	11	38	1.88
18908461--18908499	18	2.2	18	95	0	69	35	2	38	23	1.68
18910267--18910301	15	2.4	15	95	4	63	51	0	2	45	1.16
18910561--18910601	16	2.4	18	80	15	52	17	14	2	65	1.37
18914997--18915063	33	2.0	33	85	0	89	19	29	14	35	1.92
18915374--18915437	31	2.0	33	93	6	114	42	9	20	28	1.83
18918651--18918682	5	6.4	5	92	0	55	0	25	0	75	0.81
18921278--18921315	15	2.6	14	84	15	51	23	5	0	71	1.07
18923381--18923580	66	3.0	65	86	2	256	21	19	16	43	1.88
18925874--18925943	25	2.8	25	84	4	79	48	2	1	47	1.25
18925908--18925946	15	2.5	16	87	4	53	48	2	2	46	1.29
18925928--18926010	18	4.6	17	76	12	60	54	1	1	43	1.16
18925933--18926005	17	3.9	18	68	16	51	53	0	1	45	1.09
18926045--18926093	18	2.7	18	84	15	66	42	0	2	55	1.11
18929985--18930113	65	2.0	65	87	0	186	24	20	14	40	1.90
18931501--18931680	61	2.9	61	76	11	204	41	12	8	36	1.75
18931480--18931703	62	3.7	61	76	8	213	40	13	8	38	1.74
18931966--18931998	17	1.9	17	93	0	57	81	0	3	15	0.80
18935428--18935546	27	4.4	26	76	14	80	24	1	3	70	1.11
18935448--18935627	7	26.3	7	73	19	100	27	3	2	67	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18935489--18935633	3	43.7	3	68	22	60	30	3	1	64	1.18
18935568--18935683	20	5.6	20	79	7	115	28	5	1	64	1.24
18935577--18935677	42	2.4	42	86	6	134	28	5	1	63	1.29
18936524--18936595	10	7.0	10	78	10	56	23	1	1	73	0.99
18936529--18936596	7	10.3	7	75	15	56	22	1	1	75	0.97
18936525--18936602	17	5.2	14	73	18	52	21	1	1	75	0.94
18936615--18936775	60	2.7	59	90	2	261	44	6	13	36	1.70
18948289--18948583	41	7.1	41	82	7	337	26	16	19	37	1.92
18948304--18948583	83	3.4	83	90	0	434	26	16	18	38	1.92
18948538--18948669	66	2.0	66	95	1	239	28	15	18	37	1.91
18948580--18948627	23	2.1	23	96	0	87	33	12	16	37	1.86
18948603--18948695	43	2.2	43	92	1	152	26	16	20	36	1.93
18948925--18948978	7	7.9	7	82	12	67	24	0	1	74	0.92
18948930--18948996	20	3.2	20	85	8	82	23	1	2	71	1.08
18948940--18949125	7	27.7	7	71	21	84	27	2	2	67	1.18
18948969--18949125	4	38.2	4	65	20	58	27	3	3	66	1.22
18948940--18949125	19	10.1	18	68	20	86	27	2	2	67	1.18
18949070--18949186	20	5.6	20	75	8	99	26	5	2	64	1.29
18949070--18949207	42	3.4	41	78	9	124	23	5	3	66	1.30
18949468--18949525	12	4.8	12	72	16	57	31	0	13	55	1.39
18950022--18950047	4	6.5	4	100	0	52	23	0	0	76	0.78
18950077--18950122	6	7.7	6	81	13	51	17	2	0	80	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18950074--18950122	18	2.7	18	79	20	66	18	2	0	79	0.83
18950150--18950244	30	3.2	29	65	26	74	45	8	11	34	1.71
18950139--18950414	58	4.7	57	79	8	277	46	6	10	35	1.65
18950138--18950414	119	2.4	117	83	7	330	46	6	10	35	1.65
18961121--18961307	42	4.5	41	88	7	270	23	10	22	43	1.84
18961280--18961334	27	2.0	27	86	6	76	25	7	27	40	1.82
18961239--18961372	69	2.0	68	89	1	205	26	11	21	41	1.86
18961307--18961477	42	4.1	42	77	8	163	26	12	21	39	1.88
18961156--18961455	152	2.0	153	86	5	421	25	11	21	41	1.86
18961307--18961477	84	2.0	83	84	5	220	26	12	21	39	1.88
18961125--18961477	194	1.8	193	84	7	482	25	11	21	41	1.87
18968894--18968971	42	1.9	40	84	5	102	52	0	0	47	1.00
18970447--18970594	78	1.9	78	90	2	235	38	3	29	29	1.73
18992237--18992286	21	2.3	22	83	13	59	24	4	6	66	1.32
18992701--18992762	28	2.2	28	83	11	83	48	3	12	35	1.58
18993101--18993141	23	1.9	21	85	14	57	48	9	4	36	1.58
18993691--18993741	25	2.1	25	78	10	61	58	0	0	41	0.98
18994118--18994147	2	15.0	2	92	0	51	50	3	0	46	1.18
18998385--18998435	18	2.8	18	80	13	61	58	0	0	41	0.98
18998385--18998434	24	2.0	25	84	3	66	60	0	0	40	0.97
19001307--19001368	19	3.4	19	82	8	67	56	0	1	41	1.09
19001564--19001677	57	2.0	57	89	3	178	55	8	7	28	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19002631--19002669	11	3.5	11	82	0	51	48	0	2	48	1.15
19002771--19002806	19	1.9	18	88	5	54	36	0	0	63	0.94
19002835--19002893	25	2.4	25	82	5	75	47	1	1	49	1.21
19002963--19003000	14	3.0	13	88	11	53	47	10	0	42	1.38
19005549--19005611	26	2.4	26	91	0	99	28	41	15	14	1.87
19029485--19029534	22	2.2	23	82	7	57	30	6	0	64	1.18
19032420--19032455	18	2.0	18	100	0	72	11	44	0	44	1.39
19037078--19037131	21	2.6	21	82	11	67	40	0	12	46	1.42
19037967--19038035	22	3.2	21	80	10	77	23	4	2	69	1.20
19038679--19038739	16	3.5	16	79	18	68	34	1	0	63	1.04
19044881--19044936	22	2.5	23	85	2	78	39	7	10	42	1.67
19044800--19044965	90	1.8	90	83	5	219	37	8	9	44	1.66
19045362--19045425	30	2.1	31	82	8	78	57	6	1	34	1.33
19045642--19045692	19	2.7	19	80	11	61	49	0	0	50	1.00
19045826--19045919	26	3.5	26	75	7	80	24	4	3	68	1.23
19045873--19045908	18	1.9	18	94	5	63	36	2	0	61	1.11
19045886--19045972	27	3.3	27	70	13	74	31	5	2	60	1.32
19045995--19046062	29	2.3	30	80	12	79	33	2	4	58	1.33
19046482--19046554	38	2.0	37	84	10	96	32	10	8	47	1.68
19047545--19047580	11	3.3	11	88	0	54	8	0	8	83	0.82
19047960--19048004	12	4.0	12	77	16	51	17	0	13	68	1.20
19048907--19048956	22	2.3	21	80	10	55	6	8	8	78	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19049152--19049190	20	2.0	20	94	0	69	33	5	15	46	1.68
19050211--19050235	13	1.9	13	100	0	50	40	0	0	60	0.97
19051043--19051093	21	2.4	21	87	9	68	23	7	0	68	1.15
19051146--19051180	6	5.8	6	100	0	70	0	0	68	31	0.90
19051337--19051365	12	2.3	13	94	5	51	31	0	13	55	1.39
19054811--19054855	21	2.2	20	84	4	54	33	2	2	62	1.20
19054848--19054911	23	2.7	24	79	13	69	54	1	0	43	1.09
19055718--19055755	2	19.5	2	94	5	69	50	0	0	50	1.00
19061702--19061764	32	2.0	32	84	12	85	49	0	1	49	1.10
19062501--19062656	82	1.9	83	89	4	244	45	7	10	36	1.67
19063437--19063482	4	11.5	4	90	0	56	50	17	0	32	1.47
19063523--19063556	13	2.5	14	90	4	52	44	0	11	44	1.40
19064023--19064060	16	2.4	16	80	20	53	44	0	0	55	0.99
19064022--19064127	47	2.4	43	75	15	110	47	0	0	51	1.07
19064030--19064131	28	3.1	34	69	25	76	48	0	0	50	1.07
19064697--19064735	8	4.9	8	84	9	53	61	0	0	38	0.96
19064706--19064736	15	2.1	15	93	0	53	64	0	0	35	0.94
19065329--19065435	30	3.6	30	81	7	119	42	9	1	46	1.47
19079279--19079313	3	11.7	3	100	0	70	34	0	0	65	0.93
19082885--19082924	19	2.1	19	90	0	62	67	0	0	32	0.91
19087299--19087340	19	2.3	19	91	4	68	33	0	0	66	0.92
19088097--19088141	22	2.0	22	83	8	56	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19088092--19088171	29	2.8	27	74	20	74	43	0	1	55	1.08
19090364--19090445	37	2.2	37	97	0	155	34	13	28	24	1.93
19093215--19093267	25	2.1	25	86	6	72	33	9	9	47	1.68
19093536--19093583	18	2.8	17	81	6	60	75	6	2	16	1.11
19093536--19093582	17	2.8	17	84	9	60	76	4	2	17	1.04
19093919--19093964	20	2.3	20	92	0	74	58	13	13	15	1.63
19094294--19094333	19	2.1	19	85	0	53	72	0	0	27	0.85
19095092--19095122	4	7.8	4	92	0	53	51	0	22	25	1.48
19097930--19097971	13	3.3	13	93	3	68	47	11	14	26	1.78
19099068--19099128	27	2.4	27	86	8	83	57	0	6	36	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109