genome.fa.s35.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  26  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4463541--4463633	25	3.5	25	70	18	80	58	2	1	38	1.17
4464773--4464820	24	2.0	24	91	0	78	14	8	33	43	1.75
4465732--4465765	16	2.1	17	88	5	52	44	0	2	52	1.16
4465814--4465853	14	3.1	14	79	13	50	62	0	0	37	0.95
4465804--4465853	27	1.9	25	84	8	64	56	0	2	42	1.11
4467174--4467237	20	3.2	20	76	10	69	35	1	0	62	1.05
4469595--4469648	17	3.1	17	74	12	56	29	0	1	68	1.00
4474966--4475080	45	2.6	45	87	2	151	25	37	9	27	1.87
4475004--4475144	75	1.9	75	82	2	176	24	36	12	26	1.90
4475055--4475113	30	2.0	30	89	0	91	25	30	15	28	1.96
4475082--4475220	60	2.3	59	83	4	188	21	35	17	25	1.95
4478855--4478894	17	2.4	17	95	0	71	42	2	12	42	1.56
4485402--4485432	15	2.1	15	100	0	62	48	19	0	32	1.49
4492257--4492283	2	13.5	2	100	0	54	51	0	48	0	1.00
4496653--4496686	2	18.0	2	88	11	54	50	0	0	50	1.00
4496653--4496686	17	2.0	17	94	0	59	50	0	0	50	1.00
4497629--4497750	32	3.9	31	74	7	93	48	6	4	40	1.48
4498008--4498046	21	1.9	20	84	5	51	43	0	10	46	1.37
4498476--4498500	2	12.5	2	100	0	50	52	0	0	48	1.00
4498662--4498718	21	2.8	20	76	5	60	43	7	36	12	1.69
4501666--4501723	15	3.9	15	79	0	62	27	0	20	51	1.47
4501667--4501731	15	4.3	15	76	7	60	24	0	23	52	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4501825--4501900	14	5.4	14	75	13	57	17	2	31	48	1.60
4501855--4501914	14	4.3	14	83	10	61	11	1	35	51	1.48
4501819--4501914	28	3.4	28	78	7	88	15	2	32	50	1.56
4502027--4502069	22	2.0	22	81	9	52	44	0	2	53	1.13
4509344--4509386	13	3.3	12	87	9	50	67	4	2	25	1.22
4509437--4509468	15	2.1	16	88	11	50	43	0	6	50	1.27
4509615--4509669	23	2.3	23	84	3	65	36	9	3	50	1.51
4509992--4510034	21	2.0	21	86	0	59	55	0	2	41	1.12
4517285--4517419	70	1.9	70	84	0	180	36	6	7	49	1.57
4517411--4517469	31	1.9	31	89	0	91	40	0	0	59	0.97
4517549--4517598	3	16.7	3	100	0	100	34	0	0	66	0.92
4521175--4521205	2	15.5	2	100	0	62	51	0	0	48	1.00
4526136--4526237	29	3.5	27	75	10	78	54	5	0	38	1.31
4526165--4526218	20	2.8	20	77	11	58	61	5	1	31	1.30
4526185--4526280	9	10.0	9	70	17	52	47	6	1	44	1.35
4526220--4526263	21	2.0	21	82	4	52	36	9	2	52	1.46
4526380--4526441	27	2.3	27	81	13	74	41	3	0	54	1.16
4526378--4526416	17	2.2	18	86	4	53	46	2	0	51	1.14
4526435--4526492	16	3.4	16	79	9	62	55	3	0	41	1.17
4526506--4526553	24	2.0	24	83	0	60	62	12	2	22	1.40
4526846--4526973	19	7.1	17	73	17	89	37	3	6	52	1.45
4526890--4527162	10	27.5	10	66	8	76	36	2	6	54	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4526851--4527089	9	24.8	9	68	15	95	38	3	5	52	1.42
4526979--4527074	32	3.1	31	82	7	88	40	1	7	51	1.37
4527015--4527141	20	6.2	20	73	12	87	34	1	7	56	1.36
4526992--4527074	32	2.6	31	81	9	89	38	0	8	53	1.32
4527049--4527121	31	2.4	31	79	6	85	28	2	6	61	1.35
4527682--4527812	68	1.9	68	81	3	156	31	16	14	38	1.88
4528322--4528364	12	3.6	12	80	0	50	13	0	18	67	1.23
4528315--4528392	18	4.2	18	70	19	61	16	0	19	64	1.30
4528310--4528394	30	2.9	29	76	10	84	17	0	18	63	1.31
4531019--4531077	30	2.0	30	86	6	84	44	8	3	44	1.51
4531067--4531132	31	2.1	31	83	5	80	34	22	7	34	1.83
4534190--4534458	59	4.5	58	72	7	175	36	10	7	45	1.66
4534356--4534589	63	3.8	63	81	6	250	36	8	7	48	1.61
4534231--4534607	63	6.4	57	73	10	224	35	9	6	48	1.63
4536016--4536069	26	2.1	26	96	0	99	29	7	27	35	1.84
4537126--4537155	14	2.1	14	93	6	51	83	0	16	0	0.65
4537906--4537940	2	17.5	2	93	0	61	48	0	2	48	1.16
4540015--4540072	29	2.0	29	86	6	82	53	5	0	41	1.23
4540610--4540655	23	2.0	23	84	12	60	41	0	2	56	1.11
4541342--4541408	24	3.0	22	83	16	84	34	2	0	62	1.10
4541438--4541474	15	2.5	15	86	0	56	48	2	0	48	1.15
4548296--4548320	10	2.5	10	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4548487--4548533	23	2.0	23	87	0	67	36	17	10	36	1.84
4553995--4554019	2	12.5	2	100	0	50	52	0	48	0	1.00
4554238--4554389	30	5.2	30	75	15	122	41	8	0	50	1.33
4554410--4554470	28	2.2	28	86	13	83	60	1	1	36	1.16
4557040--4557113	37	2.1	37	84	5	98	62	13	2	21	1.44
4557561--4557591	2	15.5	2	100	0	62	51	0	0	48	1.00
4563923--4563958	4	9.0	4	100	0	72	50	25	0	25	1.50
4569124--4569162	2	19.5	2	100	0	78	0	48	0	51	1.00
4575781--4575856	29	2.5	31	74	10	84	53	1	2	42	1.23
4577350--4577396	22	2.3	21	85	10	62	68	2	0	29	1.02
4583979--4584036	25	2.4	25	85	5	75	41	17	27	13	1.87
4587468--4587507	19	2.0	20	85	4	55	35	5	20	40	1.74
4593029--4593072	20	2.2	20	95	0	79	20	18	15	45	1.85
4597453--4597487	2	17.5	2	100	0	70	0	51	0	48	1.00
4600149--4600178	8	3.8	8	95	0	51	53	0	0	46	1.00
4605363--4605405	18	2.3	18	88	8	59	32	0	0	67	0.91
4605363--4605406	9	4.7	9	80	8	52	34	0	0	65	0.93
4605439--4605502	15	4.6	15	69	25	50	62	3	0	34	1.11
4605446--4605506	30	1.9	32	83	9	81	65	3	0	31	1.09
4606594--4606618	12	2.1	12	100	0	50	68	0	0	32	0.90
4611359--4611396	8	4.9	8	83	6	51	34	0	2	63	1.09
4611359--4611397	15	2.5	15	83	4	51	33	0	2	64	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4612012--4612071	16	3.9	15	82	6	66	61	5	1	31	1.27
4612499--4612545	21	2.2	21	84	0	67	34	23	4	38	1.74
4613229--4613264	2	18.0	2	100	0	72	50	0	0	50	1.00
4613493--4613530	3	12.7	3	100	0	76	31	0	0	68	0.90
4614652--4614724	29	2.4	30	86	6	103	53	0	1	45	1.09
4615698--4615743	20	2.1	24	84	15	64	43	0	2	54	1.12
4615712--4615751	20	2.0	21	85	5	55	52	2	0	45	1.14
4615769--4615807	17	2.2	18	90	4	62	69	0	0	30	0.89
4625964--4626004	3	13.7	3	94	0	73	31	0	2	65	1.05
4626901--4627000	10	10.3	10	76	14	75	58	6	1	35	1.30
4626949--4627000	27	1.9	27	88	7	79	67	3	1	26	1.18
4627269--4627298	13	2.3	13	100	0	60	73	6	0	20	1.05
4628090--4628257	11	16.6	10	69	14	87	40	1	3	54	1.28
4628093--4628257	20	8.2	20	70	16	81	40	1	3	54	1.28
4628085--4628143	27	2.1	27	84	3	73	42	0	3	54	1.17
4628099--4628135	16	2.2	18	90	9	60	45	0	5	48	1.25
4638419--4638453	3	11.7	3	93	0	52	28	0	5	65	1.15
4639703--4640025	160	2.0	160	100	0	646	33	16	6	43	1.74
4662379--4662435	27	2.1	27	96	0	105	17	28	22	31	1.97
4666266--4666338	34	2.2	33	83	11	87	42	1	1	54	1.17
4666763--4666798	16	2.2	17	90	5	56	72	0	2	25	0.98
4667094--4667128	16	2.2	16	89	0	52	60	5	2	31	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4667353--4667403	5	10.0	5	79	12	59	47	0	0	52	1.00
4667356--4667402	9	5.2	9	80	10	60	46	0	0	53	1.00
4667378--4667417	15	2.7	15	88	3	55	42	2	0	55	1.13
4667356--4667417	19	3.3	19	80	10	67	46	1	0	51	1.10
4669147--4669213	24	2.8	24	81	6	82	50	5	0	43	1.26
4669791--4669825	6	5.8	6	96	0	61	17	28	51	2	1.59
4669895--4669937	22	2.0	22	85	0	59	39	0	9	51	1.34
4670827--4670859	13	2.5	14	85	14	52	33	0	0	66	0.92
4677401--4677447	21	2.1	23	84	7	62	38	0	0	61	0.96
4677468--4677507	10	4.1	10	83	6	55	67	0	0	32	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109