genome.fa.s35.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  40  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6356867--6357002	59	2.5	53	82	12	161	28	5	2	63	1.27
6357030--6357063	8	4.1	8	88	3	50	20	2	0	76	0.92
6357951--6358023	22	3.4	21	80	10	60	20	1	1	76	0.93
6357966--6358013	21	2.2	23	85	11	73	14	2	0	83	0.74
6357961--6358031	16	4.4	16	84	12	83	18	1	0	80	0.79
6357961--6358031	5	14.2	5	79	16	76	18	1	0	80	0.79
6358044--6358377	58	5.8	57	81	10	358	44	7	12	35	1.71
6358056--6358145	28	3.1	28	66	27	80	42	6	13	37	1.70
6358047--6358381	119	2.9	118	82	7	400	44	7	12	35	1.71
6360158--6360197	12	3.3	12	86	6	55	57	0	0	42	0.98
6360860--6360891	2	16.0	2	93	0	55	46	0	0	53	1.00
6362814--6362846	10	3.3	10	88	12	50	60	0	6	33	1.21
6363418--6363455	18	2.1	19	85	14	53	68	10	0	21	1.19
6366333--6366358	2	13.0	2	100	0	52	50	50	0	0	1.00
6371473--6371519	24	2.0	23	83	4	58	42	10	8	38	1.70
6372130--6372175	2	23.0	2	95	0	83	47	0	0	52	1.00
6375022--6375054	17	1.9	17	93	0	57	21	12	0	66	1.23
6382259--6382305	18	2.6	18	96	0	85	38	29	10	21	1.87
6386419--6386468	23	2.2	23	85	7	66	44	0	6	50	1.26
6386547--6386598	14	3.6	15	73	17	56	67	0	0	32	0.91
6386540--6386598	21	2.8	22	79	7	77	66	0	0	33	0.92
6411977--6412033	16	3.5	16	70	13	53	64	0	0	35	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6411973--6412028	23	2.5	22	85	8	69	66	0	0	33	0.92
6411975--6412034	26	2.3	26	85	2	86	66	0	0	33	0.92
6412931--6412972	19	2.2	19	87	8	59	54	0	0	45	0.99
6413478--6413567	45	2.0	45	95	0	162	43	15	4	36	1.67
6418420--6418460	8	5.0	8	83	16	57	39	21	0	39	1.54
6421427--6421592	83	2.0	83	98	0	323	39	9	16	34	1.81
6426142--6426209	13	4.8	15	68	17	56	30	17	8	42	1.80
6426140--6426217	15	5.5	15	68	11	65	32	19	7	41	1.80
6426140--6426218	28	2.8	28	86	0	104	31	18	8	40	1.82
6426907--6427316	87	4.7	87	79	8	370	30	12	13	42	1.82
6426909--6427316	43	9.4	44	78	8	381	29	12	13	43	1.82
6427895--6427926	17	1.9	16	93	6	55	3	0	12	84	0.74
6428343--6428390	15	3.3	15	80	5	55	18	0	8	72	1.08
6428333--6428407	29	2.7	27	75	20	73	16	2	6	74	1.14
6428484--6428530	18	2.6	18	90	6	69	44	14	6	34	1.71
6440083--6440115	14	2.2	16	89	10	52	57	24	6	12	1.57
6440483--6440513	2	15.5	2	100	0	62	48	0	0	51	1.00
6452580--6452634	26	2.2	25	86	3	74	54	7	3	34	1.46
6455049--6455105	24	2.3	24	76	11	62	54	0	7	38	1.28
6459260--6459290	14	2.1	15	94	5	55	25	0	9	64	1.24
6461619--6461660	18	2.3	19	91	4	68	50	2	4	42	1.36
6463852--6463894	21	2.1	21	91	4	70	46	9	2	41	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6466121--6466174	27	2.0	27	92	0	90	27	16	22	33	1.95
6472882--6472933	12	4.3	12	80	9	61	63	0	1	34	1.06
6472888--6472941	18	3.1	18	80	15	69	66	0	1	31	1.02
6482435--6482716	138	2.0	139	90	4	453	32	14	21	31	1.93
6484359--6484402	22	2.0	22	95	0	79	31	11	13	43	1.80
6499479--6499507	2	14.5	2	100	0	58	0	48	0	51	1.00
6504665--6504692	6	4.7	6	100	0	56	14	17	0	67	1.22
6511967--6512004	3	12.3	3	94	5	67	34	0	0	65	0.93
6516298--6516331	17	2.0	17	88	11	52	64	5	5	23	1.38
6523327--6523364	12	2.9	13	80	11	51	73	0	0	26	0.83
6523357--6523415	30	2.0	29	87	9	84	59	0	0	40	0.97
6526116--6526145	2	15.0	2	100	0	60	0	50	0	50	1.00
6534216--6534242	14	1.9	14	100	0	54	88	0	11	0	0.50
6534813--6534856	20	2.2	20	84	8	54	50	0	0	50	1.00
6538967--6539209	130	1.9	130	82	10	309	44	7	6	41	1.57
6540355--6540421	24	2.6	25	75	20	75	56	1	2	38	1.24
6541778--6541957	89	2.0	89	96	0	333	39	18	10	32	1.84
6542941--6542987	22	2.1	22	88	7	69	55	0	0	44	0.99
6542990--6543057	30	2.3	30	87	5	93	48	1	0	50	1.10
6544868--6545543	366	1.8	368	89	2	1072	45	6	7	40	1.58
6554199--6554245	3	15.7	3	100	0	94	31	0	0	68	0.90
6554468--6554506	2	19.5	2	100	0	78	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6555305--6555337	17	2.0	17	88	5	50	72	0	0	27	0.85
6556244--6556282	16	2.4	16	86	4	51	53	5	0	41	1.23
6557000--6557030	14	2.2	14	94	0	53	12	32	32	22	1.92
6559831--6559856	7	3.7	7	100	0	52	26	0	30	42	1.56
6567429--6567478	26	1.9	26	91	0	82	32	8	12	48	1.69
6567557--6567593	18	2.1	18	100	0	74	10	10	35	43	1.75
6572284--6572362	40	2.0	41	92	2	133	18	12	20	48	1.81
6572964--6573012	25	2.0	25	100	0	98	20	24	14	40	1.89
6574938--6575010	29	2.6	29	75	12	71	50	4	6	38	1.48
6578471--6578520	14	3.6	14	78	10	57	46	0	0	54	1.00
6579331--6579366	12	3.1	12	88	8	56	52	5	0	41	1.24
6579954--6580006	11	5.4	10	75	24	51	50	0	1	47	1.12
6579958--6579995	18	2.1	19	90	5	60	52	0	2	44	1.14
6587432--6587521	35	2.8	31	80	11	92	46	0	6	46	1.29
6590049--6590077	14	2.0	15	93	6	51	0	31	0	68	0.89
6590510--6590608	13	8.3	12	66	23	50	66	1	4	28	1.16
6590539--6590599	21	2.9	21	83	11	79	63	1	4	29	1.24
6590517--6590614	17	5.3	17	68	25	56	66	1	4	28	1.17
6590506--6590643	60	2.3	60	78	15	146	68	0	2	28	1.09
6590805--6590838	11	3.2	10	88	12	50	2	0	11	85	0.71
6590854--6591179	45	7.6	43	80	4	284	42	19	15	23	1.89
6591194--6591285	43	2.2	41	82	9	105	43	17	11	27	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6592294--6592330	17	2.2	17	90	0	56	2	18	0	78	0.87
6592667--6592696	15	2.0	15	93	0	51	26	16	0	56	1.40
6602726--6602759	16	2.1	16	88	0	50	76	0	14	8	1.01
6602860--6602988	47	2.8	47	89	5	183	31	10	6	50	1.64
6602859--6603003	46	3.1	45	78	14	152	31	11	7	50	1.66
6602860--6603003	47	3.1	45	80	11	157	31	11	6	50	1.64
6603055--6603087	16	2.0	17	88	5	50	45	0	3	51	1.16
6603023--6603179	59	2.7	59	91	1	262	39	10	4	45	1.58
6602958--6603181	59	3.8	59	82	5	260	37	10	6	45	1.64
6603209--6603238	11	2.6	11	94	5	51	80	0	3	16	0.85
6603255--6603310	3	18.0	3	89	7	85	62	1	3	32	1.23
6603731--6603774	21	2.2	20	84	12	54	54	18	0	27	1.44
6603743--6603906	82	2.0	82	97	0	310	28	18	10	42	1.84
6604097--6604180	34	2.5	33	79	14	98	69	1	4	25	1.15
6605781--6606105	62	5.4	64	77	14	214	35	11	5	48	1.62
6605783--6606002	120	1.8	121	84	8	304	33	10	4	50	1.58
6605781--6606105	180	1.8	180	82	6	426	35	11	5	48	1.62
6605933--6606142	62	3.4	60	80	13	221	37	10	4	48	1.56
6606202--6606239	4	9.5	4	88	11	60	76	0	0	23	0.79
6606205--6606232	13	2.2	13	100	0	56	78	0	0	21	0.75
6606202--6606235	17	2.0	17	100	0	68	76	0	0	23	0.79
6606202--6606249	21	2.3	21	89	7	71	72	2	0	25	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6607147--6607182	8	4.4	8	96	3	63	63	2	0	33	1.08
6607407--6607563	52	3.2	52	66	22	136	46	17	10	26	1.79
6607377--6607611	97	2.5	96	86	5	309	44	19	9	26	1.81
6607411--6607759	44	7.7	44	77	9	308	45	17	11	25	1.81
6607548--6607759	87	2.4	88	88	1	318	47	16	11	25	1.79
6607551--6607783	44	5.3	44	83	2	274	46	16	11	25	1.80
6607530--6607782	131	1.9	131	84	3	328	46	16	11	25	1.81
6608800--6608876	1	77.0	1	77	0	73	9	1	1	88	0.64
6608806--6608875	8	8.6	8	87	7	97	8	1	1	88	0.63
6619330--6619600	118	2.3	118	83	8	329	35	12	5	45	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109