genome.fa.s35.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  57  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11302758--11302792	12	2.9	12	91	0	61	5	68	8	17	1.35
11303895--11304011	38	3.5	31	70	17	81	49	0	4	46	1.21
11303807--11304008	69	2.9	69	85	3	280	47	0	7	45	1.35
11320051--11320110	29	2.1	29	90	0	93	45	3	0	51	1.17
11321277--11321306	2	15.0	2	100	0	60	50	0	0	50	1.00
11321799--11321830	2	16.0	2	100	0	64	50	0	0	50	1.00
11338869--11338914	18	2.8	17	84	15	53	47	0	0	52	1.00
11348460--11348505	23	2.0	23	91	0	74	17	13	30	39	1.87
11348651--11348720	35	2.0	35	91	0	113	25	18	20	35	1.95
11349428--11349500	35	2.1	35	100	0	146	35	16	23	24	1.95
11362156--11362213	27	2.1	27	90	0	89	39	13	8	37	1.76
11363347--11363384	18	2.1	18	100	0	76	57	0	10	31	1.32
11364769--11364804	18	1.9	19	88	5	56	44	5	8	41	1.58
11366000--11366027	2	14.0	2	100	0	56	50	50	0	0	1.00
11370524--11370666	21	6.6	21	72	10	101	35	6	7	49	1.59
11370994--11371232	22	10.8	22	70	8	108	37	7	7	47	1.59
11371231--11371325	22	4.3	21	76	12	84	42	10	5	42	1.62
11371231--11371328	44	2.2	44	80	3	108	41	11	5	41	1.63
11371293--11371357	22	3.0	22	82	8	62	35	10	3	50	1.53
11371533--11371640	22	5.0	21	70	13	85	42	8	2	46	1.48
11371630--11371684	11	5.0	11	76	8	58	34	1	9	54	1.43
11371978--11372039	22	2.8	22	75	0	61	38	9	8	43	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11372030--11372081	22	2.4	22	83	0	59	38	11	3	46	1.59
11372247--11372350	22	4.9	22	73	11	74	42	9	2	45	1.52
11372476--11372590	22	5.3	21	76	11	99	35	7	6	49	1.59
11372585--11372634	22	2.3	22	86	6	66	34	10	4	52	1.54
11372771--11372820	22	2.3	23	86	10	77	38	10	0	52	1.35
11373492--11373768	149	1.9	148	88	0	419	34	14	8	42	1.76
11375144--11375198	16	3.4	16	76	2	56	41	0	0	58	0.98
11375156--11375198	17	2.6	17	77	3	52	46	0	0	53	1.00
11375186--11375215	13	2.2	14	94	5	53	66	0	0	33	0.92
11375186--11375223	15	2.6	14	88	12	51	68	0	0	31	0.90
11377047--11377154	30	3.7	30	75	11	107	18	0	25	55	1.48
11377074--11377126	23	2.3	24	80	9	65	22	1	24	50	1.59
11377023--11377153	60	2.2	60	84	6	167	20	1	25	52	1.55
11377126--11377222	38	2.6	38	81	4	99	21	0	26	51	1.48
11377142--11377199	15	3.8	16	88	4	84	22	0	25	51	1.48
11377054--11377192	60	2.3	60	82	6	156	20	0	24	53	1.50
11377159--11377207	15	3.2	15	88	2	53	16	0	28	55	1.42
11377126--11377233	53	2.0	54	85	5	148	24	0	25	50	1.50
11377175--11377221	22	2.1	22	84	0	58	19	0	27	53	1.45
11377159--11377248	38	2.3	38	81	7	101	23	1	25	50	1.57
11377212--11377285	16	4.6	16	73	5	60	24	5	24	45	1.74
11377143--11377363	101	2.2	102	82	3	259	25	2	23	47	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11377738--11377772	3	11.7	3	93	0	61	65	0	2	31	1.07
11379465--11379512	25	1.9	25	91	0	78	50	6	25	18	1.70
11383143--11383191	21	2.3	21	80	13	55	10	12	2	75	1.13
11383837--11383894	30	1.9	30	86	6	82	70	6	0	22	1.10
11385152--11385186	18	1.9	18	88	0	52	25	2	25	45	1.67
11385225--11385337	8	15.1	8	71	17	66	18	0	27	53	1.44
11385228--11385268	14	2.8	15	85	7	57	17	0	26	56	1.41
11385225--11385342	60	2.0	59	86	5	166	18	0	27	54	1.44
11385251--11385341	15	6.2	14	75	16	78	16	0	26	57	1.40
11385284--11385334	14	3.5	14	76	12	50	15	0	27	56	1.39
11385295--11385334	21	1.9	21	85	10	55	15	0	25	60	1.35
11385324--11385565	15	15.2	16	66	16	85	27	0	21	50	1.52
11385243--11385434	60	3.2	60	78	6	156	22	0	23	53	1.47
11385347--11385512	8	21.2	8	67	14	69	27	0	21	51	1.52
11385385--11385575	101	1.9	101	88	0	292	26	1	22	50	1.56
11385789--11385844	9	6.6	8	76	15	51	26	1	3	67	1.16
11385792--11385841	23	2.0	26	81	11	61	26	2	4	68	1.18
11385966--11385992	3	9.0	3	100	0	54	66	0	0	33	0.92
11386385--11386417	11	3.1	11	82	8	50	51	27	3	18	1.60
11388540--11388578	20	1.9	21	84	5	53	33	2	0	64	1.08
11401674--11401752	32	2.4	32	83	6	88	56	0	0	43	0.99
11401699--11401752	26	2.1	25	86	6	72	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11401672--11401747	21	3.8	20	75	10	66	56	0	0	43	0.99
11402246--11402281	18	1.9	19	88	5	56	47	0	2	50	1.15
11402345--11402398	26	2.1	25	86	6	72	53	1	0	44	1.11
11402627--11402688	29	2.2	29	82	5	74	51	0	0	48	1.00
11403013--11403061	18	2.7	18	78	12	55	44	0	0	55	0.99
11403067--11403113	22	2.3	20	79	13	51	55	4	0	40	1.19
11403369--11403436	28	2.5	28	81	13	81	41	1	1	55	1.18
11403413--11403468	11	4.8	11	75	16	51	51	1	0	46	1.11
11408096--11408143	16	2.9	16	81	6	51	10	20	4	64	1.41
11410092--11410121	16	1.9	15	93	6	51	43	0	0	56	0.99
11411126--11411159	14	2.4	14	90	9	52	38	0	2	58	1.13
11411150--11411192	17	2.4	19	80	11	63	32	0	0	67	0.91
11411789--11411878	38	2.3	38	84	3	108	28	8	3	58	1.44
11412048--11412106	31	1.9	31	96	0	109	32	1	10	55	1.43
11412200--11412311	33	3.5	33	71	11	97	25	13	5	55	1.59
11412285--11412329	23	2.0	23	90	0	72	20	13	4	62	1.48
11420757--11420794	16	2.4	16	82	4	51	63	0	0	36	0.95
11420989--11421021	3	11.0	3	100	0	66	66	0	0	33	0.92
11423531--11423573	20	2.2	20	100	0	86	41	4	4	48	1.44
11425210--11425376	84	2.0	84	97	0	316	22	15	18	43	1.88
11442151--11442198	21	2.2	22	78	14	55	39	2	27	31	1.68
11453901--11453990	34	2.6	34	78	18	89	40	0	1	58	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11453956--11454071	50	2.2	54	83	8	143	48	1	0	50	1.11
11454486--11454528	16	2.4	18	88	11	63	27	0	0	72	0.85
11454508--11454546	13	3.0	13	80	0	51	41	0	0	58	0.98
11454586--11454624	19	2.1	19	95	4	71	61	0	0	38	0.96
11457682--11457797	39	3.0	39	62	26	91	46	4	2	46	1.36
11463431--11463482	26	2.0	26	88	0	77	38	0	1	59	1.08
11464622--11464658	19	2.0	19	89	5	58	48	0	5	45	1.25
11465675--11465710	15	2.3	16	90	4	56	66	0	2	30	1.06
11465691--11465853	57	3.0	54	78	10	152	50	3	7	38	1.48
11466407--11466439	15	2.1	16	88	5	50	27	12	3	57	1.49
11469836--11469895	12	5.3	11	72	20	52	41	5	51	1	1.33
11469819--11469877	24	2.4	25	78	16	61	40	5	52	1	1.33
11470011--11470037	12	2.2	12	100	0	54	51	0	48	0	1.00
11472959--11473002	22	2.0	22	100	0	88	36	22	9	31	1.86
11473400--11473442	3	14.0	3	95	4	77	65	2	0	32	1.06
11475104--11475269	80	2.1	81	96	1	307	43	15	7	33	1.75
11475313--11475357	23	2.0	22	83	12	56	51	4	13	31	1.61
11475526--11475556	2	15.5	2	100	0	62	48	0	0	51	1.00
11479515--11479547	15	2.1	16	88	5	50	48	0	9	42	1.35
11479555--11479588	18	1.9	17	88	5	50	67	0	5	26	1.13
11481134--11481162	14	2.1	14	93	6	51	58	0	0	41	0.98
11486898--11486932	15	2.3	15	90	0	52	54	0	17	28	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11490302--11490383	3	27.0	3	90	7	114	65	0	3	30	1.09
11490831--11490882	10	4.8	10	76	17	50	57	7	0	34	1.27
11490831--11490879	24	2.0	24	84	0	62	61	8	0	30	1.25
11491128--11491153	6	4.3	6	100	0	52	84	0	0	15	0.62
11491142--11491232	18	5.4	17	72	22	75	67	1	5	26	1.20
11491131--11491223	3	29.0	3	74	20	64	67	1	4	26	1.16
11492815--11492849	18	1.9	18	88	0	52	22	20	11	45	1.82
11493271--11493304	16	2.1	16	88	5	50	26	5	8	58	1.51
11494846--11494887	19	2.0	21	86	13	61	2	19	0	78	0.86
11494840--11494885	16	3.0	15	79	17	51	2	17	0	80	0.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109