genome.fa.s35.2.7.7.80.10.50.1000.93.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  93  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18654880--18654923	22	2.0	22	90	0	70	34	11	11	43	1.77
18664131--18664174	20	2.2	20	96	4	81	47	0	0	52	1.00
18668866--18668925	27	2.3	26	82	8	68	61	0	3	35	1.12
18669747--18669792	20	2.3	19	88	11	65	39	0	0	60	0.97
18669747--18669801	21	2.6	21	83	16	69	41	0	0	58	0.98
18671835--18671876	17	2.5	17	92	0	66	47	4	0	47	1.23
18671791--18671874	17	5.5	15	72	17	57	40	3	1	54	1.25
18688905--18689061	52	3.0	51	79	3	170	28	19	7	44	1.78
18689381--18689494	50	2.3	50	81	0	138	21	31	8	38	1.84
18689381--18689494	25	4.6	25	71	6	88	21	31	8	38	1.84
18691840--18691979	71	2.0	71	94	0	244	44	15	10	29	1.80
18692327--18692390	19	3.4	19	78	8	76	29	12	17	40	1.86
18694140--18694183	23	2.0	22	90	4	70	61	0	2	36	1.09
18694199--18694262	31	2.0	32	87	9	94	70	0	3	26	1.02
18694202--18694260	23	2.6	23	78	2	57	69	0	1	28	0.98
18694695--18694724	13	2.3	13	94	0	51	63	0	3	33	1.11
18696688--18696731	3	14.7	3	100	0	88	31	0	0	68	0.90
18698502--18698530	14	2.1	14	100	0	58	31	6	27	34	1.83
18706712--18706764	23	2.4	21	80	17	63	81	3	7	7	0.99
18707753--18708015	48	5.4	48	78	7	255	35	9	13	41	1.77
18707743--18708016	97	2.8	95	76	10	268	35	10	12	41	1.77
18710333--18710366	17	2.0	17	88	0	50	76	0	5	17	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18714238--18714272	18	1.9	18	100	0	70	45	22	2	28	1.67
18714556--18714617	30	2.1	30	87	0	88	37	4	16	41	1.69
18718015--18718075	21	2.8	21	72	25	54	73	9	8	8	1.24
18723240--18723270	2	16.0	2	93	6	55	51	0	0	48	1.00
18724430--18724459	15	2.1	15	93	6	53	6	10	0	83	0.81
18724646--18724671	6	4.3	6	100	0	52	0	65	0	34	0.93
18727307--18727343	14	2.8	14	88	8	51	37	0	8	54	1.30
18727397--18727422	12	2.2	12	100	0	52	38	0	0	61	0.96
18727696--18727739	21	2.0	21	86	4	61	61	2	4	31	1.28
18729833--18729885	21	2.5	22	88	11	85	49	0	0	50	1.00
18737979--18738012	16	2.2	15	89	5	50	50	0	0	50	1.00
18739305--18739355	23	2.2	23	92	3	84	23	0	3	72	1.01
18739314--18739392	23	3.4	23	79	8	72	30	2	1	65	1.13
18742394--18742418	2	12.5	2	100	0	50	48	0	0	52	1.00
18744004--18744057	25	2.2	25	86	0	72	55	3	7	33	1.45
18744004--18744067	25	2.6	26	78	9	71	54	3	7	34	1.45
18744022--18744078	24	2.2	25	82	14	64	54	0	7	38	1.28
18744614--18744704	21	4.1	21	70	10	65	30	6	9	52	1.60
18744650--18744704	10	5.4	10	76	10	58	34	5	9	50	1.57
18744650--18744704	21	2.7	21	83	5	69	34	5	9	50	1.57
18744783--18744833	22	2.4	21	83	9	68	27	0	11	60	1.31
18744783--18744833	21	2.4	22	83	3	68	27	0	11	60	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18745130--18745215	22	3.9	22	70	0	73	37	6	6	48	1.57
18745181--18745259	22	3.6	22	77	0	68	39	8	5	46	1.57
18745348--18745432	22	3.9	22	79	0	89	34	8	9	48	1.65
18745343--18745405	33	1.9	32	83	3	81	36	7	7	47	1.62
18745348--18745432	44	1.9	44	80	4	100	34	8	9	48	1.65
18745458--18745511	22	2.5	22	87	6	74	31	5	3	59	1.38
18745578--18745867	44	6.7	43	68	14	132	37	8	5	48	1.56
18745563--18745688	22	6.0	21	76	10	96	34	7	6	52	1.54
18745765--18745819	22	2.5	23	79	8	60	41	14	3	40	1.63
18745781--18745847	22	3.0	22	84	0	80	38	10	1	49	1.46
18745781--18745845	11	5.9	11	75	0	58	38	9	1	50	1.44
18746567--18746859	153	1.9	152	97	0	550	39	5	17	37	1.74
18747211--18747850	22	28.7	22	67	11	167	38	7	4	48	1.53
18747444--18747507	19	3.2	19	72	12	65	34	4	6	54	1.46
18747431--18747529	11	9.3	11	67	10	53	37	4	5	53	1.42
18747424--18747525	41	2.4	41	85	4	132	38	4	4	51	1.45
18747424--18747582	85	1.9	85	80	5	187	36	6	4	52	1.47
18747628--18747730	43	2.4	44	78	1	109	37	13	3	44	1.62
18747846--18747897	14	3.6	14	75	14	61	42	5	0	51	1.25
18747853--18747912	29	2.2	29	82	8	72	46	8	1	43	1.43
18747781--18748057	44	6.3	44	69	10	154	38	9	4	47	1.56
18747910--18748056	22	6.7	21	74	7	114	35	10	6	47	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18747998--18748069	22	3.3	21	78	5	63	34	9	8	47	1.67
18748313--18748378	32	2.1	32	100	0	132	51	12	0	36	1.39
18752481--18752551	22	3.2	22	81	0	79	40	4	4	50	1.41
18752480--18752576	44	2.2	44	86	0	131	39	7	6	47	1.56
18752508--18752592	22	4.2	19	72	16	62	37	8	8	45	1.64
18752481--18752551	11	6.5	11	73	0	61	40	4	4	50	1.41
18752494--18752576	22	3.8	22	78	0	85	39	8	4	46	1.55
18753070--18753143	31	2.4	30	80	4	85	48	5	4	41	1.45
18756961--18757000	16	2.5	16	87	0	53	30	15	10	45	1.78
18776568--18776601	2	17.0	2	100	0	68	50	0	0	50	1.00
18780664--18780714	7	7.4	7	74	12	52	66	1	1	29	1.13
18780664--18780714	13	3.8	13	77	10	57	66	1	1	29	1.13
18780658--18780713	28	2.0	28	92	0	94	62	1	3	32	1.23
18781855--18781888	17	1.9	17	88	5	50	47	0	0	52	1.00
18782190--18782223	9	3.6	9	85	14	50	35	0	0	64	0.94
18782846--18782874	2	15.0	2	92	7	51	48	0	0	51	1.00
18786570--18786644	34	2.2	34	95	2	132	34	9	34	21	1.85
18788629--18788662	12	2.8	12	90	0	50	44	5	0	50	1.26
18788725--18788772	24	2.0	25	83	4	62	62	2	0	35	1.07
18788863--18788911	19	2.5	19	80	3	62	42	8	0	48	1.32
18800510--18800541	17	1.9	17	93	6	57	53	0	0	46	1.00
18801837--18801875	13	3.1	13	85	7	53	87	2	10	0	0.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18801838--18801874	16	2.2	17	95	4	67	91	2	5	0	0.48
18809479--18809524	24	1.9	24	86	0	65	30	4	6	58	1.43
18815865--18816430	240	2.4	237	79	7	544	46	7	8	37	1.62
18816018--18816430	160	2.6	160	81	7	434	46	6	7	38	1.59
18815851--18816430	80	7.3	81	71	12	389	46	7	8	37	1.62
18817816--18817856	15	2.7	15	88	3	55	46	0	0	53	1.00
18820468--18820550	40	2.0	41	95	2	150	38	12	16	32	1.86
18824906--18824936	16	1.9	16	93	0	53	29	3	3	64	1.25
18824955--18825004	23	2.1	24	82	17	61	50	2	0	48	1.12
18824991--18825050	25	2.4	25	86	13	81	53	1	0	45	1.10
18841981--18842052	20	3.6	21	71	19	64	43	0	4	52	1.20
18846034--18846068	18	1.9	18	88	0	52	22	40	17	20	1.92
18854575--18854688	57	2.0	57	94	0	201	34	18	12	35	1.88
18862435--18862479	21	2.2	20	84	4	54	51	13	2	33	1.53
18864319--18864360	14	2.8	15	85	10	59	64	0	2	33	1.07
18866948--18866981	17	1.9	18	88	5	52	70	0	0	29	0.87
18868644--18868701	26	2.2	26	84	9	73	56	6	3	32	1.42
18871262--18871288	12	2.2	12	100	0	54	37	7	25	29	1.83
18872537--18872583	24	2.0	24	83	8	60	55	0	2	42	1.12
18874165--18874211	23	2.0	24	88	8	71	31	0	0	68	0.90
18874177--18874214	16	2.3	16	90	4	58	36	0	0	63	0.95
18874205--18874247	18	2.3	19	88	8	61	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18883549--18883578	1	30.0	1	93	0	51	0	3	0	96	0.21
18887076--18887120	15	3.0	15	81	12	56	53	0	0	46	1.00
18887455--18887485	16	1.9	16	93	0	53	3	9	3	83	0.86
18887678--18887744	21	3.2	21	80	16	68	22	4	0	73	1.01
18887675--18887727	20	2.6	20	82	8	63	18	5	0	75	0.99
18887933--18887974	17	2.4	18	88	4	59	54	0	9	35	1.33
18888061--18888097	18	2.2	18	90	9	60	43	0	0	56	0.99
18888309--18888358	26	1.9	26	87	0	73	38	2	0	60	1.09
18898493--18898529	17	2.2	18	85	9	51	70	0	0	29	0.88
18904717--18904799	27	3.0	27	82	5	87	46	3	1	48	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109