genome.fa.s35.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  98  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19624984--19625023	21	1.9	21	84	0	53	22	12	15	50	1.77
19627812--19627855	3	14.7	3	100	0	88	34	0	0	65	0.93
19628110--19628154	17	2.8	16	83	10	56	28	0	0	71	0.87
19632481--19632510	9	3.2	9	95	4	51	63	0	0	36	0.95
19632483--19632512	10	3.1	10	95	4	53	63	0	0	36	0.95
19633819--19633868	23	2.1	24	85	3	66	52	0	0	48	1.00
19633854--19633898	18	2.4	19	79	17	58	55	0	0	44	0.99
19635793--19635818	1	26.0	1	100	0	52	100	0	0	0	0.00
19641665--19641697	14	2.3	15	89	5	50	81	0	0	18	0.68
19641939--19642013	31	2.5	31	79	14	84	56	1	1	41	1.16
19641977--19642017	16	2.6	16	78	21	50	53	2	0	43	1.13
19646219--19646269	21	2.4	21	96	0	93	35	19	3	41	1.70
19651049--19651082	13	2.8	12	86	8	50	70	0	11	17	1.16
19659967--19660171	57	3.5	57	89	2	293	11	7	48	32	1.67
19660156--19660198	6	7.2	6	83	0	50	2	16	58	23	1.50
19660152--19660207	24	2.3	24	90	0	85	3	14	57	25	1.53
19660152--19660198	12	3.9	12	94	0	85	2	17	57	23	1.50
19662737--19662857	60	2.1	58	93	3	206	52	6	16	24	1.68
19667509--19667534	2	13.0	2	100	0	52	50	0	0	50	1.00
19667646--19667697	21	2.5	22	78	12	56	36	3	9	50	1.54
19668048--19668227	22	8.2	22	77	0	135	40	8	5	45	1.59
19668026--19668383	44	8.0	44	73	7	209	40	8	6	44	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19668042--19668227	66	2.8	66	78	1	176	40	8	5	45	1.59
19668078--19668281	22	9.3	23	72	10	108	39	6	7	46	1.60
19668314--19668369	11	5.1	11	78	6	51	46	10	0	42	1.38
19668305--19668377	22	3.3	22	88	3	94	43	9	2	43	1.51
19668305--19668667	22	16.8	22	69	14	87	38	9	3	48	1.53
19668526--19668559	16	2.2	15	89	5	50	38	5	2	52	1.41
19668646--19668705	23	2.9	19	76	21	59	41	13	1	43	1.54
19668646--19668683	20	1.9	19	89	5	58	42	13	0	44	1.43
19668648--19668718	22	3.4	20	76	16	65	42	11	1	45	1.48
19669056--19669132	22	3.4	24	71	16	65	40	6	3	49	1.47
19669145--19669206	22	2.9	22	82	2	63	30	3	16	50	1.61
19669168--19669228	11	5.5	11	72	0	50	37	3	6	52	1.44
19669488--19669600	43	2.6	44	78	2	122	35	5	7	51	1.54
19669267--19669663	22	18.3	22	70	11	129	36	9	5	48	1.59
19669686--19669970	22	13.0	22	66	5	83	37	8	5	49	1.55
19669659--19669774	44	2.7	44	79	4	128	42	8	4	44	1.54
19670947--19670971	9	2.8	9	100	0	50	72	8	8	12	1.29
19671815--19672065	58	4.3	59	77	9	235	47	6	9	35	1.63
19671817--19672006	59	3.2	57	80	8	204	46	6	10	36	1.64
19671822--19672049	121	1.9	119	84	5	309	47	7	10	34	1.66
19671992--19672083	43	2.1	43	82	4	105	50	7	7	34	1.60
19671822--19672065	59	4.1	58	79	6	172	48	6	9	34	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19672003--19672092	43	2.1	42	85	2	117	50	7	8	33	1.63
19677337--19677384	21	2.2	22	85	10	64	37	14	10	37	1.81
19677785--19677937	42	3.6	42	86	6	193	26	12	12	49	1.76
19678126--19678171	17	2.7	16	80	12	56	78	2	8	10	1.05
19678954--19679105	77	2.0	76	82	5	182	49	5	8	36	1.58
19684223--19684302	30	2.5	31	80	13	83	45	3	5	46	1.43
19685214--19685258	18	2.4	19	82	14	58	46	0	0	53	1.00
19688094--19688136	13	3.1	14	83	10	52	79	2	2	16	0.95
19689732--19689852	63	1.9	63	94	0	215	45	14	9	30	1.76
19691324--19691357	2	17.0	2	100	0	68	50	0	0	50	1.00
19695126--19695164	17	2.5	16	88	12	55	38	10	0	51	1.36
19697885--19697941	27	2.1	27	83	6	71	14	1	21	63	1.39
19698683--19698721	20	2.0	20	90	10	62	64	2	2	30	1.21
19698801--19698833	16	2.0	17	94	5	59	30	9	0	60	1.27
19700672--19700707	18	1.9	19	88	5	56	30	2	0	66	1.06
19700864--19700919	16	3.5	15	81	11	58	26	0	1	71	0.96
19700873--19700922	22	2.3	22	82	10	66	28	0	2	70	0.99
19701947--19702035	22	3.7	24	77	14	69	73	0	4	22	1.02
19701972--19702004	17	1.9	17	100	0	66	78	0	0	21	0.75
19701939--19702023	30	2.9	30	81	8	86	76	0	4	18	0.96
19702233--19702733	48	10.5	48	74	11	370	40	20	10	28	1.86
19702294--19702736	96	4.6	95	77	10	411	40	21	10	28	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19702294--19702739	191	2.3	191	83	6	521	40	21	10	28	1.85
19707357--19707388	10	2.8	12	81	18	50	50	0	18	31	1.48
19713332--19713357	5	5.2	5	100	0	52	0	0	19	80	0.71
19714272--19714313	22	1.9	22	85	0	57	28	2	2	66	1.16
19714956--19715000	17	2.6	17	82	0	63	24	0	2	73	0.95
19716031--19716063	3	11.7	3	87	12	52	69	0	0	30	0.88
19716029--19716063	14	2.5	14	90	0	61	71	0	0	28	0.86
19716586--19716633	20	2.4	20	89	0	69	54	6	22	16	1.65
19719520--19719575	17	2.9	20	74	17	64	55	10	0	33	1.35
19719517--19719604	37	2.3	38	88	1	124	54	7	2	35	1.42
19719799--19719860	23	2.7	22	83	16	74	64	14	0	20	1.28
19719799--19719860	21	2.7	22	80	16	65	64	14	0	20	1.28
19719934--19720092	59	2.7	59	85	3	214	57	20	2	20	1.53
19723662--19723687	2	13.0	2	100	0	52	50	0	0	50	1.00
19725551--19725579	6	4.8	6	100	0	58	34	0	65	0	0.93
19728660--19728687	3	9.3	3	100	0	56	32	32	0	35	1.58
19731590--19731645	24	2.3	24	100	0	112	39	3	21	35	1.71
19735991--19736030	21	1.9	21	90	10	64	42	17	5	35	1.71
19740380--19740421	21	2.0	21	90	0	66	40	35	7	16	1.76
19741047--19741093	13	3.1	15	82	11	53	65	10	0	23	1.23
19745074--19745110	13	2.8	13	91	0	56	27	0	29	43	1.55
19746517--19746565	21	2.3	21	75	0	53	26	0	2	71	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19748506--19748544	2	19.5	2	100	0	78	51	0	0	48	1.00
19756481--19756505	6	4.2	6	100	0	50	0	32	0	68	0.90
19756479--19756517	19	2.0	20	85	9	55	0	28	0	71	0.86
19757602--19757645	15	3.0	14	80	9	52	56	0	2	40	1.11
19768568--19768592	2	12.5	2	100	0	50	48	0	0	52	1.00
19770558--19770923	182	2.0	182	99	0	723	32	18	16	33	1.93
19771475--19771535	30	2.0	30	83	0	77	54	1	0	44	1.10
19772352--19772403	21	2.4	21	81	9	61	76	11	5	5	1.13
19772349--19772403	23	2.5	22	82	8	67	76	12	5	5	1.13
19772540--19772639	51	2.0	51	87	0	146	32	14	18	36	1.90
19773378--19773420	13	3.4	12	87	9	59	72	2	0	25	0.97
19785685--19785750	34	1.9	35	81	9	82	22	0	4	72	1.02
19785800--19785904	21	4.9	20	68	20	70	66	1	2	28	1.16
19786004--19786068	12	5.8	12	71	20	50	66	1	1	30	1.10
19786278--19786335	21	2.8	21	79	12	66	44	31	5	18	1.72
19786333--19786418	22	4.0	22	76	13	72	46	29	1	23	1.60
19787707--19787796	40	2.2	40	84	3	119	28	8	13	48	1.72
19787942--19788627	38	17.7	38	81	6	732	27	9	20	42	1.83
19787918--19788627	117	6.1	115	81	6	761	28	9	20	42	1.83
19788808--19788852	3	16.0	3	82	13	60	33	0	0	66	0.92
19788801--19788859	18	3.3	17	81	15	66	28	1	0	69	0.98
19789111--19789165	26	2.1	25	83	6	65	78	16	3	1	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19789304--19789401	51	1.9	50	83	6	126	32	11	15	40	1.82
19789689--19789777	6	14.3	6	78	5	61	20	2	5	71	1.16
19790168--19790212	23	2.0	23	86	0	63	75	2	0	22	0.91
19793863--19793929	29	2.4	29	85	9	86	46	0	0	53	1.00
19795343--19795376	18	1.9	17	94	5	59	14	2	0	82	0.79
19795599--19795639	21	1.9	21	90	5	64	21	0	12	65	1.25
19795642--19795714	15	4.9	15	73	9	69	32	0	1	65	1.01
19797386--19797437	25	2.2	23	82	6	59	40	0	0	59	0.97
19798123--19798178	17	3.5	17	73	14	55	44	0	3	51	1.18
19801705--19801730	9	2.9	9	100	0	52	0	7	0	92	0.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109