genome.fa.s35.2.7.7.80.10.50.1000.76.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  76  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15280644--15280920	137	2.0	137	97	0	527	41	11	8	38	1.71
15292927--15292971	3	15.0	3	95	0	81	64	0	0	35	0.94
15294998--15295051	28	2.0	28	92	3	92	42	9	25	22	1.83
15297944--15297985	21	2.0	21	95	0	75	69	0	4	26	1.08
15298020--15298072	28	2.0	26	85	7	70	62	3	0	33	1.13
15297588--15298356	396	1.9	384	87	9	1113	46	8	6	38	1.60
15300097--15300165	17	3.8	18	69	11	52	23	2	4	69	1.20
15301929--15301962	11	3.0	11	83	8	50	38	0	2	58	1.13
15303160--15303205	14	3.2	15	90	6	69	34	0	23	41	1.55
15304319--15304361	3	14.3	3	100	0	86	67	0	0	32	0.91
15305589--15305619	15	2.1	15	93	0	53	16	12	0	70	1.16
15309284--15309330	12	4.0	12	77	5	60	38	0	2	59	1.09
15309284--15309329	23	2.0	23	86	0	65	39	0	2	58	1.10
15311480--15311556	5	15.4	5	76	20	65	77	1	1	19	0.90
15311484--15311545	9	6.3	9	73	23	54	77	1	1	19	0.94
15311480--15311546	15	4.5	14	82	12	73	77	1	1	19	0.92
15312360--15312390	3	10.3	3	100	0	62	67	0	0	32	0.91
15312691--15313339	55	11.8	55	73	9	292	43	13	20	22	1.87
15312820--15313331	110	4.7	110	79	5	473	44	13	20	22	1.86
15312812--15313339	166	3.2	164	80	4	508	44	13	20	22	1.86
15312820--15313331	221	2.3	219	80	7	549	44	13	20	22	1.86
15312820--15313331	55	9.3	54	74	10	295	44	13	20	22	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15318575--15318621	15	3.1	15	82	11	53	23	0	10	65	1.23
15318730--15318779	16	3.3	15	81	16	50	30	2	0	68	1.01
15318730--15318779	15	3.3	14	83	13	55	30	2	0	68	1.01
15318722--15318779	30	1.9	30	83	13	75	31	3	0	65	1.09
15319034--15319149	61	1.9	61	82	3	144	31	6	12	50	1.66
15319478--15319822	55	6.3	55	77	4	257	41	16	21	20	1.90
15319478--15319767	109	2.6	109	81	3	314	42	16	20	20	1.89
15319478--15319829	110	3.2	110	81	5	383	42	15	21	20	1.89
15325404--15325477	15	4.9	15	84	12	82	77	5	0	17	0.96
15325424--15325477	28	1.9	28	88	7	83	77	5	0	16	0.94
15325403--15325484	5	16.0	5	71	26	57	75	4	1	18	1.04
15325450--15325492	19	2.3	19	91	0	68	81	2	4	11	0.93
15326266--15326302	3	12.7	3	94	5	67	64	0	0	35	0.94
15326815--15326899	38	2.3	37	82	10	102	51	0	4	43	1.22
15328601--15328630	15	1.9	16	93	6	53	16	13	10	60	1.59
15329725--15329751	2	13.5	2	100	0	54	48	0	0	51	1.00
15332273--15332313	19	2.2	19	86	8	57	41	0	0	58	0.98
15332804--15332854	16	3.2	15	83	5	57	27	0	15	56	1.39
15334967--15335008	2	21.0	2	100	0	84	50	0	50	0	1.00
15335787--15335817	3	10.3	3	100	0	62	35	0	32	32	1.58
15340122--15340193	36	2.0	36	97	0	135	25	12	25	37	1.91
15341220--15341253	17	2.0	17	88	11	52	20	5	29	44	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15341672--15341739	31	2.2	32	83	2	84	25	19	16	39	1.91
15341719--15341774	29	1.9	29	92	0	94	17	8	23	50	1.74
15343190--15343247	14	4.5	14	73	20	63	50	0	1	48	1.11
15343195--15343247	12	4.3	12	77	13	63	49	0	1	49	1.12
15343181--15343286	37	2.8	38	83	8	137	47	0	6	45	1.35
15343378--15343440	8	8.1	8	71	11	51	55	3	0	41	1.16
15344448--15344480	12	2.8	12	90	9	50	33	3	12	51	1.54
15352292--15352321	12	2.5	12	94	0	51	46	0	3	50	1.18
15352352--15352426	10	7.5	10	73	10	55	58	5	4	32	1.39
15352381--15352433	10	5.2	10	73	13	54	60	1	1	35	1.19
15352311--15352488	19	9.2	19	69	17	100	56	5	3	34	1.39
15352625--15352667	21	2.0	21	100	0	86	55	4	0	39	1.20
15352652--15352686	16	2.2	16	89	0	52	68	2	0	28	1.04
15352825--15352888	9	6.6	10	75	15	55	67	7	0	25	1.17
15352801--15352879	17	4.4	17	73	17	70	64	8	1	25	1.30
15352825--15352888	18	3.3	18	84	8	74	67	7	0	25	1.17
15352942--15352981	19	2.1	19	85	0	53	32	2	0	65	1.06
15352972--15353000	12	2.3	13	94	5	51	13	0	10	75	1.04
15353102--15353167	8	7.5	8	71	18	51	24	7	1	66	1.26
15353513--15353552	14	2.8	14	88	3	53	27	15	27	30	1.96
15355944--15355982	12	3.2	12	100	0	78	58	7	7	25	1.52
15359327--15359358	16	2.0	16	100	0	64	43	31	0	25	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15363080--15363108	2	14.5	2	100	0	58	48	0	0	51	1.00
15365241--15365285	22	2.0	22	91	0	72	24	22	24	28	1.99
15370128--15370164	7	4.9	8	90	6	51	32	0	0	67	0.91
15370129--15370161	7	4.6	7	96	3	57	30	0	0	69	0.88
15377741--15377796	28	2.0	28	96	0	103	21	8	17	51	1.72
15379596--15379648	23	2.3	23	90	3	81	52	0	5	41	1.25
15385757--15385845	37	2.4	37	94	3	153	21	16	12	49	1.78
15388739--15388782	13	3.3	13	87	3	61	81	2	11	4	0.92
15392477--15392524	21	2.3	21	85	0	60	37	16	25	20	1.93
15407685--15407777	30	3.1	30	89	3	107	35	17	17	30	1.93
15409978--15410021	22	2.0	22	95	0	79	31	11	13	43	1.80
15413908--15413933	2	13.0	2	100	0	52	50	0	0	50	1.00
15414209--15414251	15	2.9	14	86	13	59	74	0	2	23	0.93
15414213--15414286	28	2.6	29	74	8	71	72	5	1	20	1.11
15415325--15415381	18	3.3	18	66	14	57	75	0	0	24	0.80
15415504--15415556	22	2.3	23	84	15	67	43	0	0	56	0.99
15421367--15421486	57	2.1	57	80	0	132	23	37	8	30	1.84
15424452--15424486	15	2.4	14	86	9	52	28	11	0	60	1.32
15436114--15436290	49	3.6	49	78	1	176	32	15	15	36	1.89
15436099--15436327	49	4.7	48	78	2	161	34	14	13	37	1.86
15436158--15436322	48	3.4	48	75	6	145	33	13	13	39	1.84
15436799--15436853	19	2.9	18	76	7	56	32	10	16	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15438688--15438749	3	20.7	3	93	0	106	69	1	0	29	0.98
15439867--15439902	16	2.2	16	90	0	54	63	13	0	22	1.29
15440653--15440693	18	2.3	18	91	0	64	78	0	21	0	0.76
15440660--15440697	18	2.1	18	90	0	58	78	0	21	0	0.74
15443982--15444049	29	2.3	29	76	14	68	45	0	10	44	1.38
15448217--15448247	3	10.3	3	92	0	53	67	0	32	0	0.91
15448604--15448634	16	1.9	16	93	0	53	58	16	22	3	1.52
15448910--15448973	28	2.3	28	97	0	119	43	15	7	32	1.76
15450543--15450582	2	20.0	2	89	0	62	47	2	2	47	1.29
15451245--15451297	23	2.3	23	83	6	63	32	1	5	60	1.31
15451242--15451293	26	2.2	24	83	13	63	30	1	5	61	1.30
15451811--15451850	2	20.0	2	94	0	71	50	2	0	47	1.14
15453654--15453684	13	2.4	13	100	0	62	41	22	0	35	1.54
15454940--15455248	9	32.8	9	66	17	96	54	5	1	38	1.34
15455139--15455186	24	2.0	24	79	0	51	60	2	0	37	1.09
15455142--15455173	15	2.1	15	94	0	55	56	3	0	40	1.15
15455102--15455197	17	5.7	17	72	14	74	58	5	0	36	1.21
15455181--15455226	21	2.2	21	84	7	58	58	10	2	28	1.43
15455361--15455443	43	1.9	43	82	4	105	57	4	0	37	1.20
15455413--15455475	28	2.2	28	80	5	74	42	6	0	50	1.27
15455527--15455577	9	5.4	9	77	9	57	23	0	1	74	0.92
15455584--15455644	18	3.2	19	79	9	61	31	3	4	60	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15455703--15455758	11	5.3	11	86	4	71	26	0	10	62	1.28
15455696--15455768	9	7.6	9	80	15	67	30	0	8	61	1.25
15455696--15455768	31	2.5	29	86	8	103	30	0	8	61	1.25
15455781--15455875	10	9.9	9	71	15	66	38	1	4	55	1.26
15455784--15455861	20	3.9	19	79	14	79	35	1	5	57	1.29
15455811--15455901	21	4.3	21	70	16	64	40	0	6	52	1.27
15461070--15461155	27	3.2	27	81	0	109	19	5	38	36	1.76
15462800--15462843	22	2.0	22	90	0	70	34	11	11	43	1.77
15465453--15465506	28	1.9	28	85	7	74	51	0	0	48	1.00
15465548--15465624	29	2.5	30	81	12	86	51	1	0	46	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109