genome.fa.s35.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  24  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4113667--4113765	46	2.1	47	83	9	123	57	3	4	35	1.33
4113579--4113781	18	10.6	19	71	18	111	60	3	2	33	1.27
4113804--4113843	17	2.4	16	87	4	53	65	2	7	25	1.32
4113975--4114060	28	3.0	28	78	8	93	31	1	4	62	1.23
4114096--4114133	19	2.0	19	89	0	58	52	0	5	42	1.24
4119993--4120054	31	2.0	31	100	0	124	29	12	19	38	1.89
4120772--4120829	24	2.3	24	82	11	73	39	12	13	34	1.82
4125586--4125634	24	2.0	26	88	8	75	48	0	4	46	1.20
4127439--4127474	2	18.5	2	94	5	65	50	0	0	50	1.00
4131271--4131318	15	2.9	16	78	9	53	47	2	0	50	1.12
4131284--4131316	17	2.0	17	88	5	50	48	0	0	51	1.00
4136078--4136107	2	15.0	2	100	0	60	50	0	0	50	1.00
4138054--4138338	141	2.0	141	100	0	570	32	21	14	30	1.93
4138267--4138481	69	3.1	70	76	9	217	31	19	10	38	1.86
4141582--4141744	63	2.7	59	81	8	193	37	6	6	50	1.52
4141777--4141899	60	2.0	60	80	9	135	34	10	5	48	1.61
4142220--4142361	62	2.3	62	79	2	160	24	23	16	35	1.94
4142685--4142732	14	3.3	14	75	11	51	6	20	14	58	1.58
4143406--4143446	18	2.3	18	82	0	55	41	14	7	36	1.74
4143417--4143538	34	3.6	34	70	12	99	45	13	9	31	1.75
4143432--4143487	17	3.4	17	90	2	87	50	12	8	28	1.70
4143501--4143544	17	2.6	17	81	0	52	50	11	9	29	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4143525--4143563	16	2.4	16	86	4	51	43	7	10	38	1.67
4143568--4143682	17	6.8	17	75	4	97	42	11	13	33	1.79
4143568--4143682	51	2.3	51	85	0	149	42	11	13	33	1.79
4143628--4143782	68	2.3	68	79	0	175	46	7	13	32	1.70
4143693--4143842	17	8.8	17	67	4	59	42	6	17	34	1.74
4143676--4143775	34	2.9	34	74	0	101	44	6	16	34	1.72
4143850--4143885	17	2.1	17	89	0	54	44	11	11	33	1.75
4145187--4145260	8	9.0	8	80	5	85	13	14	0	71	1.14
4145187--4145260	25	3.0	24	82	9	87	13	14	0	71	1.14
4146865--4146984	59	2.0	59	98	0	231	30	21	10	36	1.88
4148779--4148851	37	2.0	37	97	0	137	31	23	17	27	1.97
4159584--4159638	20	2.8	20	97	0	101	20	14	5	60	1.54
4159914--4159983	29	2.4	29	86	11	106	15	7	58	18	1.59
4160045--4160083	19	2.1	19	90	9	62	15	0	15	69	1.20
4160273--4160707	102	4.4	101	81	7	376	38	20	11	29	1.87
4160335--4160707	50	7.5	51	80	7	369	38	20	11	29	1.88
4160323--4160707	102	3.9	102	84	6	438	39	20	11	29	1.87
4160571--4160802	43	5.1	43	75	12	212	37	21	14	26	1.92
4160544--4160802	92	2.8	92	91	0	392	38	22	13	26	1.91
4160335--4160808	49	9.8	49	78	7	436	37	20	11	29	1.88
4161537--4161565	8	3.8	8	95	4	51	10	6	0	82	0.83
4168107--4168433	162	2.0	161	95	0	582	32	15	13	38	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4172009--4172051	23	1.9	22	86	13	61	6	4	9	79	1.06
4172514--4172558	21	2.1	21	84	12	56	48	2	8	40	1.47
4174260--4174332	29	2.5	29	88	4	103	16	5	56	21	1.61
4174387--4174455	22	3.2	21	73	22	56	18	0	7	73	1.05
4174387--4174449	32	1.9	33	90	3	101	17	0	7	74	1.05
4174389--4174473	12	7.3	12	71	22	58	17	1	7	74	1.11
4174444--4174497	24	2.2	24	93	0	90	16	5	5	72	1.23
4180292--4180348	29	2.0	29	96	0	105	42	10	10	36	1.74
4180691--4180719	2	14.5	2	100	0	58	51	0	0	48	1.00
4188036--4188081	18	2.7	17	83	6	58	71	2	2	23	1.08
4195842--4195910	29	2.3	30	87	2	95	31	23	8	36	1.85
4195841--4195914	30	2.5	29	86	2	103	31	21	8	39	1.83
4196053--4196096	21	2.1	21	100	0	88	47	4	29	18	1.68
4202070--4202101	11	2.8	11	95	4	55	87	9	3	0	0.64
4201122--4203253	719	3.0	709	97	1	4001	44	16	13	25	1.83
4204532--4204618	31	2.7	31	81	10	95	41	2	5	50	1.39
4204529--4204602	32	2.4	31	84	6	96	40	2	4	52	1.34
4204529--4204618	32	2.8	31	79	11	94	41	2	5	51	1.38
4211500--4211526	5	5.4	5	100	0	54	44	0	55	0	0.99
4214576--4214611	19	1.9	20	88	11	58	58	0	0	41	0.98
4214576--4214615	17	2.3	19	87	12	59	60	0	0	40	0.97
4215205--4215234	2	15.0	2	100	0	60	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4216826--4216864	15	2.6	15	88	8	53	43	5	30	20	1.73
4216847--4216891	21	2.1	21	83	0	54	33	8	35	22	1.85
4216988--4217022	15	2.3	15	90	0	52	40	2	37	20	1.67
4219605--4219635	2	15.5	2	100	0	62	51	0	0	48	1.00
4224076--4224100	2	12.5	2	100	0	50	52	0	0	48	1.00
4224146--4224195	23	2.2	23	85	0	64	54	4	6	36	1.44
4226906--4226952	20	2.4	20	85	3	60	21	2	2	74	1.03
4228668--4228833	92	1.8	91	84	6	230	40	9	7	42	1.65
4229362--4229458	36	2.7	36	73	13	92	70	0	7	22	1.12
4229552--4229592	15	2.7	15	84	0	55	17	7	34	41	1.77
4232691--4232770	23	3.5	23	82	3	108	52	12	3	31	1.57
4232736--4232790	18	3.1	18	67	15	51	50	12	3	32	1.58
4232736--4232822	35	2.4	35	84	3	102	49	12	4	33	1.61
4232898--4233201	24	12.8	24	70	21	212	54	10	2	31	1.49
4232872--4233147	66	4.1	66	74	14	197	54	10	3	31	1.51
4232903--4233136	98	2.6	89	77	18	239	54	9	2	32	1.48
4232974--4233055	27	3.1	27	86	5	107	52	9	3	34	1.52
4233068--4233113	20	2.2	20	84	3	56	54	10	4	30	1.55
4233055--4233145	21	4.2	21	74	13	76	53	9	3	32	1.50
4232914--4233196	140	2.0	136	79	13	299	54	10	3	31	1.51
4238363--4238409	17	2.9	17	84	6	53	53	6	6	34	1.52
4238375--4238439	17	3.8	17	81	6	78	53	4	7	33	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4238385--4238441	16	3.6	16	73	15	55	54	3	7	35	1.45
4238899--4238978	20	4.2	19	73	10	65	76	5	6	12	1.14
4238899--4238978	38	2.1	38	83	4	99	76	5	6	12	1.14
4239834--4239861	3	9.3	3	100	0	56	67	0	0	32	0.91
4240305--4240536	120	1.9	119	84	2	304	46	14	20	18	1.83
4251738--4251977	131	1.8	131	97	0	453	35	15	9	39	1.80
4251983--4252017	11	2.9	12	91	8	54	8	8	0	82	0.83
4252066--4252152	29	2.9	28	79	19	88	78	4	3	13	1.04
4252973--4253018	3	15.3	3	95	0	83	67	2	0	30	1.03
4253955--4254073	43	2.8	42	83	11	161	37	17	14	30	1.90
4254129--4254179	25	2.0	25	88	7	77	45	17	9	27	1.80
4254194--4254312	37	3.3	35	79	16	129	42	20	12	24	1.86
4254208--4254312	37	2.8	38	81	11	137	40	20	13	24	1.89
4254321--4254453	48	2.8	48	87	0	176	39	18	9	32	1.83
4259073--4259360	58	4.8	58	79	9	299	37	12	5	44	1.66
4259078--4259351	123	2.3	122	91	3	437	37	13	5	43	1.67
4259078--4259383	123	2.5	121	86	5	417	37	11	5	44	1.65
4259380--4259449	5	13.4	5	77	16	63	77	2	2	17	1.02
4259380--4259428	6	8.0	6	81	4	62	79	2	2	16	0.92
4259467--4259504	19	2.0	19	90	10	60	65	2	0	31	1.06
4260369--4260430	17	3.4	17	79	14	61	64	0	4	30	1.14
4260370--4260550	4	48.2	4	70	9	73	64	2	3	29	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4260383--4260582	14	14.2	13	72	15	100	64	2	3	30	1.21
4260398--4260605	53	3.8	54	68	15	56	65	2	3	28	1.23
4260378--4260550	49	3.6	49	77	13	173	64	2	3	29	1.22
4260452--4260533	27	3.2	27	80	16	111	60	3	3	31	1.31
4260570--4260620	24	2.1	25	85	3	68	74	5	1	17	1.11
4260764--4261146	84	4.4	87	86	5	360	41	21	12	25	1.87
4260948--4261190	41	5.8	40	71	12	168	41	19	11	27	1.86
4260925--4261190	84	3.2	84	92	1	437	42	18	11	27	1.85
4260764--4261150	43	9.0	43	77	11	346	42	20	11	25	1.86
4262186--4262241	19	2.7	21	76	18	55	7	17	0	75	1.03

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109