genome.fa.s35.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  8  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1341105--1341201	30	3.2	30	77	1	104	45	4	8	42	1.53
1343209--1343238	10	3.1	10	95	4	53	36	0	0	63	0.95
1343211--1343240	9	3.2	9	95	4	51	36	0	0	63	0.95
1349045--1349070	13	2.0	13	100	0	52	46	23	0	30	1.53
1350408--1350453	22	2.0	23	88	12	69	71	0	23	4	1.03
1352476--1352509	16	2.1	16	89	10	52	44	0	2	52	1.16
1356200--1356266	15	4.3	15	74	10	64	71	0	5	22	1.07
1356495--1356874	187	2.0	187	98	0	733	42	8	11	37	1.72
1360390--1360427	3	12.7	3	88	0	58	34	0	2	63	1.09
1361355--1361399	21	2.1	21	84	8	56	46	2	2	48	1.26
1363112--1363139	14	2.0	14	100	0	56	42	14	0	42	1.45
1364403--1364436	2	17.5	2	87	6	52	50	0	0	50	1.00
1364837--1364879	22	1.9	22	85	4	59	39	2	0	58	1.11
1365868--1366164	149	2.0	149	97	0	567	39	13	17	29	1.88
1366324--1366356	15	2.1	15	94	5	57	39	0	0	60	0.97
1366302--1366352	20	2.6	19	75	22	52	27	1	1	68	1.11
1366770--1366827	11	5.3	11	74	14	57	65	1	1	31	1.13
1367663--1367709	15	2.8	17	78	21	55	53	2	0	44	1.12
1367670--1367698	15	1.9	15	100	0	58	55	0	0	44	0.99
1368067--1368094	14	2.0	14	100	0	56	57	7	7	28	1.52
1369567--1369638	28	2.5	30	84	6	94	19	0	31	48	1.49
1369589--1369638	14	3.4	14	78	8	55	22	0	30	48	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1369655--1369746	16	5.6	16	79	13	89	19	2	31	46	1.62
1370964--1371017	26	2.1	26	85	0	72	24	11	44	20	1.83
1371153--1371194	14	3.2	13	83	9	50	2	14	2	80	0.90
1371161--1371195	14	2.5	14	85	0	52	2	14	0	82	0.77
1371398--1371953	110	5.1	110	84	2	620	40	18	18	22	1.92
1371408--1372276	219	3.9	221	75	9	777	40	18	18	22	1.92
1371916--1371976	23	2.7	22	80	9	61	37	24	16	21	1.93
1371926--1371976	23	2.2	23	85	0	66	39	27	13	19	1.90
1371816--1372064	133	1.9	133	89	0	390	41	20	17	20	1.90
1371802--1372079	133	2.1	132	85	0	385	38	20	18	21	1.93
1371949--1372276	109	3.0	110	83	2	444	40	19	18	21	1.91
1372145--1372188	22	2.0	22	90	0	70	34	20	20	25	1.97
1371597--1372276	352	1.9	352	87	3	985	40	19	18	21	1.92
1373010--1373552	99	5.5	99	81	4	526	34	14	20	30	1.93
1373010--1373552	33	16.5	33	77	8	439	34	14	20	30	1.93
1374843--1374881	10	3.9	10	82	0	51	0	10	2	87	0.65
1377654--1378048	59	6.7	58	79	10	399	35	12	6	45	1.68
1377653--1378051	120	3.4	117	85	7	501	35	12	6	44	1.69
1379862--1379925	28	2.3	28	88	0	92	18	15	46	18	1.84
1380136--1380173	19	2.1	17	90	9	58	78	5	0	15	0.91
1384154--1384381	16	14.8	16	68	15	92	20	2	30	46	1.64
1384263--1384375	33	3.5	33	78	9	106	18	4	32	44	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1385594--1385659	26	2.5	26	83	7	80	27	15	37	19	1.92
1385613--1385668	26	2.1	27	86	6	78	26	12	42	17	1.85
1386808--1386846	19	2.1	18	85	4	51	43	10	0	46	1.37
1388748--1388805	14	3.9	15	82	13	68	32	0	0	67	0.91
1389536--1389576	21	2.0	21	85	9	57	56	2	2	39	1.26
1392531--1392567	14	2.6	14	100	0	74	51	8	0	40	1.32
1393317--1393382	26	2.7	23	84	11	80	62	0	0	37	0.96
1394103--1394196	31	3.2	30	65	25	74	35	13	9	41	1.78
1394060--1394341	59	4.8	58	84	7	286	34	13	7	45	1.70
1394119--1394327	63	3.5	59	87	5	271	33	14	6	45	1.70
1394061--1394338	57	4.7	61	84	7	274	33	13	6	46	1.69
1394351--1394375	13	1.9	13	100	0	50	80	0	0	20	0.72
1394351--1394411	21	3.0	20	77	15	56	77	1	3	18	0.99
1394869--1394912	19	2.3	19	84	7	54	40	13	22	22	1.89
1395301--1395337	19	1.9	19	88	0	56	72	0	0	27	0.84
1395342--1395431	21	4.1	21	76	20	80	66	4	4	24	1.29
1395353--1395441	26	3.7	25	73	20	84	66	3	4	25	1.26
1395447--1395480	13	2.4	15	90	9	54	79	0	20	0	0.73
1395449--1395490	18	2.3	18	81	18	52	80	0	16	2	0.81
1395478--1395587	48	2.3	47	80	12	125	66	1	3	28	1.19
1395775--1395964	43	4.4	43	80	5	188	43	17	12	26	1.85
1395967--1396003	19	1.9	19	94	0	65	8	0	2	89	0.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1395967--1396005	18	2.1	18	90	4	60	10	0	2	87	0.65
1395968--1396005	10	3.9	10	86	6	51	7	0	2	89	0.57
1396009--1396182	51	3.6	49	81	10	184	37	21	16	24	1.93
1396092--1396444	41	8.5	41	84	5	340	39	18	16	24	1.91
1396092--1396444	83	4.3	83	81	6	378	39	18	16	24	1.91
1398326--1398399	11	7.2	11	76	22	63	9	13	0	77	1.00
1398326--1398362	11	3.4	11	96	0	65	8	10	0	81	0.89
1398314--1398401	30	2.9	30	74	9	90	11	14	0	73	1.09
1403204--1403293	27	3.2	27	61	14	65	36	13	3	46	1.60
1403339--1403383	10	4.3	10	83	10	54	75	2	4	17	1.07
1403317--1403387	22	3.3	22	78	7	76	76	2	4	16	1.07
1404195--1404232	19	2.0	19	89	0	58	73	0	0	26	0.83
1404275--1404319	14	3.4	14	73	20	51	64	4	4	26	1.32
1404344--1404380	9	4.1	9	86	13	58	89	0	10	0	0.49
1404346--1404381	10	3.8	10	85	14	58	91	0	8	0	0.41
1404347--1404381	18	1.9	18	100	0	70	91	0	8	0	0.42
1404395--1404508	7	16.4	7	74	20	75	69	0	2	27	1.08
1404395--1404508	15	8.2	14	76	20	75	69	0	2	27	1.08
1404397--1404508	22	5.4	21	75	22	69	69	0	2	26	1.07
1404377--1404509	28	4.8	26	72	19	85	69	0	3	27	1.08
1404446--1404489	6	7.2	6	90	10	63	68	0	0	31	0.90
1404448--1404511	18	3.8	17	84	14	71	73	0	0	26	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1413516--1413543	2	14.0	2	100	0	56	50	0	0	50	1.00
1414520--1414557	20	1.9	20	94	0	67	39	0	7	52	1.31
1414523--1414565	8	5.4	8	82	0	50	37	2	9	51	1.47
1417665--1417706	21	2.0	21	90	4	66	47	21	14	16	1.82
1418836--1418867	15	2.1	15	94	0	55	40	3	6	50	1.43
1424012--1424082	27	2.6	27	97	0	133	21	15	28	35	1.94
1424829--1424876	18	2.6	19	83	12	64	22	6	2	68	1.23
1425052--1425553	97	5.2	96	86	5	647	36	22	13	27	1.92
1425080--1425553	47	9.8	47	85	5	572	35	23	13	26	1.93
1425080--1425553	144	3.3	144	89	2	729	35	23	13	26	1.93
1435691--1436143	238	1.9	236	82	5	565	34	10	8	45	1.69
1437269--1437316	18	2.6	19	80	12	55	20	6	4	68	1.28
1437277--1437316	18	2.2	18	91	8	64	22	5	2	70	1.19
1438346--1438406	21	2.9	20	85	7	68	19	1	31	47	1.59
1438347--1438413	21	3.2	21	83	8	66	17	1	31	49	1.56
1438462--1438684	14	15.4	14	67	10	74	20	1	29	48	1.60
1438476--1438611	43	3.1	42	75	10	139	21	1	30	46	1.60
1438462--1438685	87	2.6	86	80	7	238	20	1	29	48	1.60
1438531--1438895	58	6.3	60	75	10	199	21	3	26	48	1.65
1438632--1438742	14	7.7	14	71	13	73	18	4	27	49	1.66
1439034--1439097	3	21.7	3	81	12	71	28	1	1	68	1.07
1439234--1439266	11	2.8	12	90	9	50	18	6	0	75	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1439405--1439456	21	2.5	21	81	6	70	73	0	0	26	0.84
1439401--1439454	27	2.0	26	82	10	65	74	0	0	25	0.83
1440917--1440993	34	2.3	34	81	0	91	51	7	16	23	1.70
1440934--1441250	34	9.5	34	68	14	122	52	9	18	18	1.72
1440867--1441250	134	2.9	133	83	1	473	51	9	19	19	1.74
1441175--1441286	34	3.3	34	75	12	104	53	12	16	17	1.73
1441021--1441283	68	3.9	67	71	10	187	51	11	18	18	1.75
1441102--1441286	102	1.8	100	80	6	221	52	11	17	18	1.73
1441378--1441490	34	3.4	33	76	2	93	55	15	14	15	1.69
1441511--1441608	34	2.9	34	78	4	108	51	12	18	18	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109