genome.fa.s35.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  20  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3384541--3384686	78	1.9	80	82	5	190	39	8	16	34	1.80
3384987--3385234	42	6.0	41	85	1	289	24	11	19	44	1.84
3385206--3385381	44	4.0	44	76	6	144	23	10	18	47	1.79
3385059--3385381	84	3.8	86	79	8	245	23	10	19	46	1.81
3386335--3386383	21	2.2	23	89	7	75	12	0	10	77	0.99
3386325--3386401	37	2.1	36	90	9	122	10	0	11	77	0.98
3386330--3386402	20	3.8	20	75	17	75	10	0	12	76	1.02
3386333--3386414	37	2.2	36	82	8	94	13	1	12	73	1.17
3386495--3386695	71	2.9	71	75	9	190	52	4	8	33	1.53
3386543--3386582	14	2.4	18	76	23	52	47	7	0	45	1.31
3386509--3386742	71	3.6	62	75	13	179	50	4	8	35	1.55
3387333--3387372	18	2.2	18	90	0	62	37	0	42	20	1.52
3388140--3388165	13	2.0	13	100	0	52	76	7	0	15	0.99
3388190--3388492	58	5.1	61	85	6	374	33	11	8	46	1.69
3388495--3388581	22	4.2	21	71	16	65	73	0	6	19	1.05
3388533--3388567	6	6.0	6	86	6	54	80	0	2	17	0.84
3388533--3388566	11	3.0	11	91	4	50	79	0	2	17	0.86
3388535--3388567	17	1.9	17	93	0	57	81	0	3	15	0.80
3388513--3388567	29	1.9	28	85	10	76	78	0	5	16	0.93
3388590--3388635	24	1.9	24	86	8	67	78	4	2	15	1.01
3389542--3389669	25	5.2	25	70	19	74	61	2	2	33	1.21
3389551--3389683	16	9.3	14	70	23	73	62	2	3	32	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3389541--3389669	14	9.4	14	73	16	78	62	2	2	33	1.21
3389606--3389636	4	7.8	4	100	0	62	77	0	0	22	0.77
3389872--3389972	1	101.0	1	74	0	67	0	2	10	85	0.76
3389872--3389969	10	9.5	10	80	10	117	1	3	11	84	0.78
3389872--3389969	19	4.8	20	80	16	103	1	3	11	84	0.78
3389872--3389972	27	4.0	24	74	22	82	0	2	10	85	0.76
3389979--3390528	41	13.1	41	87	8	777	37	23	16	22	1.94
3389979--3390528	83	6.5	83	89	6	792	37	23	16	22	1.94
3391732--3391773	10	4.3	10	81	6	59	7	19	0	73	1.05
3394445--3394491	15	3.1	15	90	3	76	48	4	25	21	1.68
3397451--3397807	60	6.0	59	82	7	393	33	12	7	46	1.69
3397451--3397809	119	3.0	117	83	9	433	33	12	7	46	1.69
3397453--3397806	179	2.0	180	87	8	517	34	12	6	46	1.68
3397827--3397883	5	11.4	5	80	17	57	82	1	1	14	0.83
3397838--3397884	6	7.8	6	81	9	60	82	2	2	12	0.84
3397817--3397884	17	3.9	17	77	12	68	80	1	2	14	0.89
3397907--3397946	4	9.8	4	83	5	53	75	5	0	20	0.99
3397818--3397937	22	5.5	22	72	14	72	75	3	2	19	1.06
3397891--3397946	12	4.4	12	82	6	67	69	7	0	23	1.12
3398929--3398979	25	2.0	25	85	7	68	58	1	0	39	1.09
3398928--3399049	14	8.4	14	71	20	67	61	2	2	33	1.22
3400194--3400234	21	2.0	21	100	0	82	51	9	4	34	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3401258--3401291	17	1.9	18	88	5	52	2	17	0	79	0.86
3401284--3401337	18	2.8	19	86	8	74	12	12	0	74	1.08
3401268--3401337	20	3.7	19	83	9	72	11	12	0	75	1.04
3402894--3402937	18	2.4	18	76	0	52	22	15	9	52	1.71
3404487--3404528	17	2.5	17	81	14	52	33	0	0	66	0.92
3404986--3405023	17	2.2	17	86	9	51	60	0	2	36	1.11
3410365--3410867	230	2.2	231	83	2	600	34	12	12	39	1.82
3410766--3410929	63	2.6	63	82	6	183	36	12	14	37	1.83
3410891--3410989	46	2.2	46	81	0	108	35	17	12	35	1.87
3412793--3412826	14	2.3	15	90	5	52	47	0	0	52	1.00
3414393--3414433	20	2.0	22	90	9	68	14	0	14	70	1.16
3423087--3423137	6	8.0	6	87	8	66	17	0	33	49	1.47
3423093--3423154	27	2.3	27	83	8	74	17	1	35	45	1.59
3423182--3423272	41	2.5	33	71	24	83	14	2	36	47	1.56
3423196--3423272	13	5.8	13	72	11	66	14	2	36	46	1.58
3423195--3423286	40	2.3	41	88	1	132	16	3	34	45	1.63
3424285--3424338	24	2.3	22	82	17	65	5	16	1	75	1.07
3427218--3427249	17	1.9	17	93	6	57	9	6	0	84	0.78
3427348--3427405	29	2.0	29	82	0	71	58	0	5	36	1.20
3438176--3438213	19	2.0	20	89	5	60	68	0	0	31	0.90
3438195--3438238	14	3.1	15	80	9	56	56	0	0	43	0.99
3439484--3439611	67	1.9	67	90	0	202	37	7	10	44	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3440162--3440186	2	12.5	2	100	0	50	48	0	0	52	1.00
3442285--3442325	20	2.0	20	85	4	55	48	7	0	43	1.30
3444507--3444541	13	2.6	13	90	4	52	45	0	17	37	1.48
3445315--3445347	16	2.1	16	100	0	66	30	12	12	45	1.78
3451185--3451314	61	2.1	61	85	0	170	54	7	9	28	1.59
3455306--3455352	23	2.0	23	95	0	85	72	0	19	8	1.10
3455332--3455370	18	2.2	18	90	0	60	79	0	15	5	0.90
3455374--3455415	14	2.8	15	78	10	50	73	0	16	9	1.08
3455323--3455425	25	4.3	23	73	16	68	77	0	13	8	0.98
3455374--3455415	15	2.9	15	78	3	50	73	0	16	9	1.08
3456658--3456741	21	4.0	21	79	0	105	40	5	11	41	1.66
3456659--3456744	42	2.0	42	90	0	136	39	5	13	40	1.69
3457183--3457949	41	18.6	41	84	2	806	22	13	16	47	1.82
3457969--3458072	44	2.4	43	79	7	111	27	13	15	43	1.84
3459025--3459058	15	2.2	16	89	5	52	85	0	5	8	0.75
3459103--3459160	24	2.4	25	80	13	68	37	5	13	43	1.67
3460242--3460279	19	2.0	19	89	0	58	73	0	23	2	0.95
3461310--3461359	24	2.1	24	96	0	91	40	6	16	38	1.73
3461528--3461571	23	2.0	23	90	4	72	38	4	13	43	1.65
3461658--3461697	21	2.0	20	85	5	53	80	2	5	12	0.98
3468934--3468958	13	1.9	13	100	0	50	44	0	0	56	0.99
3469176--3469273	52	1.9	51	85	6	135	55	0	3	41	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3470958--3470987	2	15.0	2	100	0	60	0	50	0	50	1.00
3475084--3475111	3	9.3	3	100	0	56	32	0	0	67	0.91
3477687--3477714	14	2.0	14	100	0	56	35	7	28	28	1.84
3478343--3478390	21	2.3	20	89	3	69	47	0	2	50	1.12
3478372--3478420	25	2.0	24	84	4	62	42	0	2	55	1.11
3478328--3478406	34	2.4	33	82	15	94	41	0	1	56	1.07
3489260--3489302	17	2.5	17	100	0	86	16	11	27	44	1.82
3492234--3492267	16	2.1	16	88	0	50	11	11	11	64	1.50
3492260--3492315	28	2.0	27	86	3	76	25	8	8	57	1.58
3493696--3493720	6	4.2	6	100	0	50	68	16	0	16	1.22
3501270--3501345	16	4.9	16	72	16	61	53	1	0	44	1.08
3502083--3502117	7	5.0	7	100	0	70	42	0	0	57	0.99
3504947--3504996	19	2.5	20	84	12	68	8	16	4	72	1.24
3504955--3504996	19	2.2	19	95	0	75	4	19	4	71	1.22
3506998--3507046	16	3.1	15	83	11	62	46	6	10	36	1.63
3508105--3508137	13	2.5	14	85	14	52	6	0	39	54	1.25
3513357--3513401	18	2.5	18	96	0	81	15	8	26	48	1.74
3514012--3514049	12	3.0	13	84	7	51	44	0	5	50	1.24
3514023--3514056	11	3.0	11	91	4	50	47	2	0	50	1.16
3514149--3514189	20	2.0	21	85	4	57	51	0	0	48	1.00
3523977--3524001	13	1.9	13	100	0	50	96	4	0	0	0.24
3523976--3524002	14	1.9	14	100	0	54	96	3	0	0	0.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3523976--3524004	15	1.9	15	100	0	58	93	6	0	0	0.36
3524985--3525015	2	15.5	2	100	0	62	48	0	0	51	1.00
3527815--3527874	31	1.9	31	86	0	84	26	3	20	50	1.64
3527817--3527877	16	3.9	16	73	4	61	29	3	16	50	1.61
3527816--3527884	16	4.4	15	70	15	50	27	2	17	52	1.59
3529279--3529306	5	5.6	5	100	0	56	0	0	21	78	0.75
3531249--3531278	12	2.5	12	94	0	51	36	36	10	16	1.82
3532936--3532971	17	2.1	17	89	0	54	66	0	0	33	0.92
3535189--3535228	20	2.0	20	90	0	62	60	0	5	35	1.19
3537105--3537182	33	2.4	32	75	10	77	37	0	2	60	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109