genome.fa.s35.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  4  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
502185--502219	17	2.1	17	88	0	52	40	5	0	54	1.24
502301--502559	41	6.2	41	77	7	254	25	10	19	43	1.84
502301--502533	126	1.9	125	81	2	288	25	10	18	45	1.81
502767--502812	24	1.9	24	95	0	83	36	0	32	30	1.58
503188--503224	12	3.1	12	100	0	74	24	16	16	43	1.87
503752--504048	59	4.9	60	78	10	277	49	5	12	32	1.65
503736--504048	119	2.6	119	82	8	373	49	5	12	31	1.63
506011--506083	38	1.9	38	94	0	128	30	9	16	43	1.80
511127--511440	170	1.8	170	85	4	445	32	14	19	34	1.91
511966--511994	2	14.5	2	100	0	58	0	0	48	51	1.00
516237--516262	2	13.0	2	100	0	52	0	50	0	50	1.00
517159--517193	14	2.4	15	85	4	54	54	0	0	45	0.99
519202--519235	2	17.5	2	93	6	61	50	0	0	50	1.00
521786--521856	28	2.4	30	88	6	110	45	0	0	54	0.99
526310--526359	20	2.5	19	81	15	57	72	2	0	26	0.96
526321--526359	21	1.9	20	89	5	60	71	2	0	25	0.98
530414--530465	26	2.0	26	84	0	68	51	1	3	42	1.31
536993--537026	16	2.2	16	89	5	52	52	0	5	41	1.25
543573--543617	9	5.6	9	78	21	55	31	0	0	68	0.89
543568--543616	24	2.1	22	92	7	80	30	0	0	69	0.89
543570--543615	15	3.3	14	85	14	60	30	0	0	69	0.89
547303--547348	23	2.0	24	82	4	58	67	2	0	30	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
548332--548420	45	2.0	44	93	2	151	19	14	19	47	1.83
550961--551091	52	2.5	52	82	4	158	28	21	7	42	1.80
551132--551182	11	4.6	11	92	0	84	50	25	0	23	1.49
552061--552213	52	2.9	52	86	1	200	27	20	7	45	1.77
552241--552271	11	2.8	11	95	0	53	51	25	0	22	1.48
553584--553608	11	2.3	11	100	0	50	0	16	0	84	0.63
561247--561363	58	2.0	57	85	4	155	46	4	2	47	1.36
561748--561792	24	1.9	23	86	4	63	44	2	2	51	1.26
565516--565562	23	2.0	24	83	8	60	68	2	0	29	1.02
565742--565782	18	2.2	19	86	4	57	53	0	0	46	1.00
566563--566650	44	2.0	44	95	0	158	18	14	19	47	1.82
567101--567229	56	2.3	56	98	0	249	40	9	3	46	1.54
569245--569373	52	2.5	52	80	2	152	24	19	8	47	1.77
569666--569776	24	4.5	25	75	8	104	19	25	9	45	1.79
569666--569747	25	3.3	24	79	3	92	19	24	9	46	1.80
570294--570450	52	3.0	52	79	3	172	26	21	7	43	1.79
574111--574392	58	4.8	58	84	7	331	36	12	7	44	1.69
574225--574315	27	3.2	27	64	17	67	38	14	5	41	1.69
576495--576604	57	2.0	55	84	7	143	10	30	7	52	1.62
577060--577096	9	4.1	9	96	0	56	10	0	5	83	0.79
576978--577217	129	1.9	126	88	4	365	32	13	10	44	1.77
577187--577253	1	67.0	1	77	0	62	5	0	5	88	0.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
577187--577251	8	7.9	8	83	13	78	6	0	6	87	0.66
577187--577252	17	3.9	17	86	4	89	6	0	6	87	0.65
577258--577668	42	10.0	42	88	5	558	37	21	17	23	1.94
578886--578951	8	7.8	8	75	11	60	6	15	0	78	0.93
578884--578963	17	4.8	17	76	11	76	7	17	0	75	1.03
578895--578961	9	7.8	9	76	15	52	7	17	0	74	1.04
582802--583089	58	4.9	58	80	8	321	36	11	6	45	1.66
582804--583089	119	2.4	119	87	5	402	36	11	5	45	1.66
591277--591373	30	3.3	30	64	25	80	48	3	1	47	1.24
591778--591830	24	2.2	24	86	6	72	49	0	3	47	1.19
592411--592436	2	13.0	2	100	0	52	50	0	0	50	1.00
594834--594875	13	2.9	14	86	10	50	69	0	0	30	0.89
595589--595635	23	2.0	24	83	8	60	68	2	0	29	1.02
596638--596725	44	2.0	44	93	0	149	18	13	19	48	1.80
601170--601229	25	2.4	25	82	0	75	21	23	20	35	1.96
604899--604942	22	2.0	22	90	0	70	38	6	9	45	1.63
607712--607756	24	1.9	23	86	4	63	44	0	8	46	1.34
608573--608982	202	2.0	202	94	0	721	30	10	16	42	1.82
610144--610183	21	1.9	21	100	0	80	50	10	15	25	1.74
613718--613765	24	2.0	24	95	0	87	8	31	29	31	1.87
613744--613822	24	3.4	23	81	11	83	10	25	31	32	1.89
616405--616450	21	2.2	21	84	0	56	30	8	0	60	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
616639--616689	24	2.1	25	85	3	68	52	5	0	41	1.25
633975--634082	30	3.6	30	80	5	103	33	8	24	34	1.85
634011--634086	30	2.5	30	86	0	107	31	9	26	32	1.88
641527--641585	24	2.3	25	75	18	59	42	0	1	55	1.09
649159--649203	24	1.9	24	86	4	65	51	2	2	44	1.26
658749--658894	52	2.8	52	87	0	193	43	8	21	26	1.82
659377--659458	31	2.6	31	90	0	128	30	17	24	28	1.97
659512--659562	25	2.1	25	88	3	77	41	9	27	21	1.84
659812--659851	11	3.6	11	96	0	71	20	0	22	57	1.41
659885--659997	52	2.2	52	83	3	138	47	7	18	26	1.74
662555--662642	44	2.0	44	93	0	149	46	19	14	19	1.84
663422--663478	18	3.2	18	80	7	62	49	0	0	50	1.00
663422--663462	19	2.2	18	86	4	55	46	0	0	53	1.00
663432--663478	17	2.6	19	83	6	62	55	0	0	44	0.99
667367--667411	24	1.9	24	86	4	65	51	2	2	44	1.26
676228--676488	56	4.7	54	90	8	391	45	7	10	36	1.67
680270--680315	23	1.9	24	83	16	60	39	15	23	21	1.92
680332--680362	10	3.2	10	95	4	55	90	0	9	0	0.46
680325--680380	26	2.1	27	90	3	87	83	0	12	3	0.76
680325--680380	9	6.2	9	83	6	69	83	0	12	3	0.76
680317--680389	7	10.3	7	75	11	60	80	0	13	5	0.87
680318--680387	17	4.2	17	80	10	81	82	0	11	5	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
681591--681915	81	4.0	82	92	5	522	22	17	22	37	1.94
681591--681915	41	8.0	41	92	5	522	22	17	22	37	1.94
681894--681937	22	2.0	22	100	0	88	22	18	31	27	1.97
681852--681978	63	2.0	64	98	1	247	22	18	26	33	1.96
681810--682020	105	2.0	106	95	2	381	22	17	25	35	1.95
681916--682055	42	3.5	42	94	4	236	22	17	25	35	1.96
689758--689817	22	2.7	22	84	0	84	38	15	11	35	1.83
689964--690007	18	2.4	19	85	11	65	43	9	15	31	1.79
690033--690126	34	2.8	35	75	6	104	34	7	15	42	1.76
690124--690175	16	3.2	16	83	5	77	42	13	9	34	1.77
690118--690167	16	3.0	17	79	5	66	44	10	14	32	1.78
690118--690261	33	4.3	33	71	11	103	40	9	15	34	1.81
690322--690366	21	2.0	22	87	8	65	46	13	2	37	1.55
690331--690382	21	2.5	21	84	6	61	44	17	1	36	1.60
690364--690554	23	8.2	23	72	18	98	43	15	7	32	1.74
690399--690554	22	6.9	22	75	13	113	45	16	7	30	1.74
690397--690552	24	6.9	23	73	14	112	44	16	7	31	1.74
690364--690552	46	4.1	45	75	14	147	43	15	7	32	1.75
690790--690841	21	2.5	20	78	3	59	38	13	7	40	1.73
692023--692083	17	3.6	18	69	24	51	14	11	0	73	1.09
693504--693817	59	5.3	59	82	9	347	36	10	4	48	1.58
693810--693971	60	2.6	62	86	7	215	36	10	3	49	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
694085--694665	45	12.9	44	79	9	566	45	19	10	24	1.82
694085--694665	89	6.4	89	75	13	458	45	19	10	24	1.82
694220--694327	56	1.9	56	81	7	130	47	20	11	21	1.81
694270--694666	179	2.2	175	88	4	582	45	18	10	25	1.81
695660--695708	23	2.2	22	85	3	62	8	6	0	85	0.73
695659--695715	10	5.7	10	77	10	55	7	8	0	84	0.79
699059--699088	12	2.5	12	88	0	51	30	23	6	40	1.80
702288--702317	15	2.1	14	93	6	51	30	0	0	70	0.88
704689--704992	58	5.2	59	77	10	304	35	10	5	48	1.60
704687--704986	119	2.6	113	78	14	288	35	10	5	48	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109