genome.fa.s35.2.7.7.80.10.50.1000.73.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  73  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14548369--14548412	21	2.0	22	86	8	63	45	0	0	54	0.99
14548455--14548481	13	2.1	13	100	0	54	33	0	0	66	0.92
14553005--14553029	2	12.5	2	100	0	50	48	0	0	52	1.00
14554592--14554643	26	2.0	26	81	7	61	32	7	21	38	1.82
14557673--14557707	17	2.1	16	89	5	52	25	0	8	65	1.21
14558007--14558035	11	2.6	11	100	0	58	41	0	6	51	1.28
14571374--14571556	96	1.9	98	82	2	235	46	11	16	25	1.80
14580035--14580094	21	2.9	21	85	5	77	28	18	16	36	1.93
14593551--14593590	17	2.4	16	84	15	55	65	0	0	35	0.93
14593552--14593598	17	2.8	17	75	15	53	65	0	0	34	0.93
14593933--14594074	47	3.1	45	68	19	123	51	4	7	35	1.52
14595703--14595732	14	2.1	15	93	6	53	16	20	23	40	1.91
14595847--14595919	37	1.9	37	89	8	112	26	19	9	45	1.80
14598865--14599061	101	2.0	101	86	0	277	41	16	11	30	1.83
14600686--14600710	7	3.6	7	100	0	50	88	0	0	12	0.53
14601427--14601456	15	2.1	14	93	6	51	90	10	0	0	0.47
14603227--14603274	13	3.6	13	77	5	51	31	0	0	68	0.90
14615869--14615922	24	2.2	24	75	15	58	48	5	3	42	1.44
14617240--14617291	22	2.3	23	75	15	56	32	0	1	65	1.04
14617425--14617462	19	2.0	19	100	0	76	36	15	5	42	1.70
14617980--14618027	22	2.1	22	85	14	62	25	0	0	75	0.81
14618122--14618158	19	2.0	19	89	5	58	21	5	0	72	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14618377--14618465	29	3.2	26	70	15	63	74	2	5	17	1.12
14619926--14619987	28	2.2	28	88	5	90	53	16	11	19	1.72
14620532--14620615	38	2.2	37	85	4	105	40	10	9	39	1.73
14620726--14620764	17	2.3	17	86	0	51	51	17	5	25	1.66
14627680--14627736	21	2.7	21	76	10	62	1	26	1	70	1.07
14627714--14627745	8	3.9	8	92	8	55	0	25	0	75	0.81
14627713--14627745	17	1.9	17	93	0	57	0	24	0	75	0.80
14627761--14627791	3	10.0	3	93	6	53	64	0	0	35	0.94
14629221--14629284	21	3.0	21	75	6	58	37	10	31	20	1.87
14631658--14631698	21	2.0	20	85	4	55	24	7	4	63	1.40
14633385--14633439	25	2.2	24	84	9	67	23	0	3	72	1.00
14637344--14637380	12	3.2	12	78	21	51	62	8	0	29	1.24
14637344--14637390	23	2.0	23	88	8	69	61	6	2	29	1.32
14638916--14639166	125	2.0	125	82	3	303	39	12	13	33	1.83
14638924--14639200	125	2.2	125	80	5	292	39	11	13	35	1.82
14640411--14640455	15	3.1	14	75	12	54	46	0	0	53	1.00
14640404--14640460	17	3.5	17	69	28	52	45	0	0	54	0.99
14641445--14641485	3	13.7	3	89	0	64	68	26	0	4	1.10
14641484--14641512	3	9.7	3	100	0	58	68	0	0	31	0.89
14641514--14641563	23	2.2	23	82	7	57	78	4	2	16	1.00
14642679--14642772	32	2.9	33	75	6	95	48	4	7	39	1.51
14643813--14643853	21	2.0	21	95	0	73	48	0	9	41	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14643815--14643861	21	2.2	21	88	0	67	53	0	6	40	1.27
14643818--14643877	21	2.7	23	82	10	63	56	0	6	36	1.26
14643975--14644049	19	4.1	18	77	8	71	54	2	2	40	1.28
14643989--14644057	9	7.8	9	72	15	63	55	1	1	42	1.18
14647251--14647319	32	2.1	32	83	2	84	56	5	2	34	1.38
14655742--14655767	9	2.9	9	100	0	52	46	0	0	53	1.00
14656390--14656473	42	2.0	40	82	11	98	48	3	2	45	1.32
14659523--14660098	300	1.9	300	84	7	776	39	13	12	34	1.82
14664393--14664535	63	2.3	63	84	6	173	37	11	18	32	1.87
14664432--14664566	63	2.2	63	81	5	157	39	16	14	30	1.88
14667771--14668101	55	6.1	55	73	11	206	28	15	11	45	1.81
14668206--14668252	24	2.0	24	83	8	60	42	2	0	55	1.12
14668387--14668416	15	2.0	15	93	0	51	60	16	6	16	1.56
14672983--14673019	17	2.2	17	90	4	58	37	0	13	48	1.43
14674207--14674392	3	67.3	3	62	24	54	59	5	2	32	1.36
14674224--14674371	5	29.0	5	75	13	106	57	6	2	33	1.37
14674216--14674363	47	3.2	46	80	7	165	58	5	2	33	1.35
14685674--14685721	25	1.9	25	95	0	87	77	0	4	18	0.93
14685673--14685727	25	2.2	25	86	0	83	78	0	5	16	0.93
14686531--14686634	5	21.2	5	78	11	99	58	4	1	34	1.30
14686528--14686610	18	4.3	18	75	19	69	59	4	1	34	1.27
14691523--14691583	28	2.2	27	80	11	70	49	3	0	47	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14691553--14691611	32	1.9	29	83	16	75	45	3	1	49	1.28
14692656--14692708	20	2.7	20	85	2	63	49	18	7	24	1.74
14695296--14695328	16	2.0	17	88	5	50	69	9	3	18	1.28
14701450--14701498	18	2.6	19	80	9	55	44	4	14	36	1.64
14702403--14702675	145	1.9	145	86	0	393	43	12	13	30	1.82
14709630--14709670	7	6.8	6	86	13	50	43	17	0	39	1.49
14709630--14709671	19	2.4	17	84	15	50	42	16	0	40	1.48
14711259--14711305	22	2.1	22	96	0	85	17	10	27	44	1.81
14717231--14717265	17	2.1	17	88	0	52	28	0	0	71	0.86
14725408--14725780	142	2.6	142	81	3	383	32	11	12	42	1.80
14726195--14726246	27	1.9	27	84	7	70	78	0	9	11	0.95
14726199--14726235	8	4.6	8	96	0	65	81	0	8	10	0.89
14727281--14727480	13	15.5	13	70	13	92	48	37	0	14	1.47
14727282--14727405	65	1.9	66	89	1	196	47	34	0	16	1.53
14727379--14727497	13	9.3	12	73	16	73	50	35	0	14	1.43
14727281--14727480	65	3.1	63	79	6	190	48	37	0	14	1.47
14727428--14727683	6	40.0	6	71	17	110	46	34	0	18	1.53
14727428--14727683	13	20.0	12	67	18	110	46	34	0	18	1.53
14727588--14727685	46	2.2	44	78	12	92	47	34	0	17	1.48
14727794--14727828	3	12.0	3	93	6	63	34	0	0	65	0.93
14728109--14728181	28	2.4	31	82	13	80	63	4	5	27	1.35
14729271--14729364	45	2.1	45	91	0	152	38	9	14	37	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14730828--14730879	19	2.8	19	80	5	54	53	0	1	44	1.11
14730846--14730885	19	2.0	20	90	4	64	47	2	0	50	1.14
14731192--14731223	15	2.1	16	94	5	57	21	15	0	62	1.32
14732444--14732470	14	1.9	14	100	0	54	40	0	0	59	0.98
14733547--14733893	172	2.0	171	90	1	543	26	21	12	39	1.88
14736191--14736487	7	45.6	7	69	12	125	17	1	32	48	1.56
14736186--14736247	20	3.1	20	90	6	99	11	0	35	53	1.37
14736192--14736260	20	3.4	21	88	7	81	14	0	33	52	1.42
14736188--14736287	47	2.2	46	81	5	112	16	1	34	49	1.52
14739970--14740458	125	3.9	124	80	1	496	42	16	12	28	1.84
14739974--14740491	124	4.2	122	79	3	457	42	16	12	28	1.84
14743658--14743693	16	2.4	15	86	13	56	0	22	0	77	0.76
14744190--14744282	10	9.0	10	69	13	55	5	16	0	78	0.93
14744193--14744280	25	3.4	25	73	22	83	5	17	0	77	0.96
14744191--14744268	14	5.5	13	70	22	52	6	16	0	76	0.98
14752115--14752160	24	1.9	24	81	0	56	41	6	2	50	1.40
14752599--14752675	24	3.2	24	66	20	61	53	0	2	44	1.14
14752665--14752706	10	4.2	10	84	0	57	57	0	2	40	1.12
14760233--14760348	49	2.4	48	84	4	144	39	18	10	31	1.85
14761255--14761383	69	1.9	70	90	3	208	46	16	10	26	1.79
14761335--14761373	21	1.9	20	84	5	51	48	15	5	30	1.66
14762999--14763057	31	1.9	31	92	0	100	49	5	20	25	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14763948--14764022	40	1.9	40	86	10	111	50	8	12	29	1.67
14764976--14765072	12	8.2	12	68	16	60	50	11	7	30	1.65
14764977--14765076	34	2.8	35	86	6	148	51	11	7	31	1.64
14765073--14765327	24	11.1	24	67	19	96	54	9	2	33	1.47
14765112--14765292	71	2.5	71	92	0	281	54	9	3	33	1.49
14765271--14765337	21	3.2	20	81	6	80	55	10	2	31	1.49
14765069--14765327	42	5.7	46	72	16	166	54	9	2	33	1.47
14765271--14765316	20	2.2	20	88	3	65	56	10	2	30	1.46
14765258--14765348	21	4.2	21	73	13	76	54	10	2	31	1.47
14765304--14765406	56	1.9	54	86	7	147	53	14	4	27	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109