genome.fa.s35.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  54  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10598993--10599061	21	3.3	21	93	0	120	27	24	28	18	1.98
10600516--10600556	13	3.2	13	82	0	55	39	0	0	60	0.96
10600533--10600580	22	2.2	22	82	14	55	47	0	2	50	1.12
10602039--10602407	187	2.0	188	92	0	614	32	6	21	39	1.78
10604878--10604985	36	2.9	37	65	13	96	57	2	8	31	1.43
10604878--10605017	73	1.9	73	92	0	235	55	2	9	32	1.43
10611013--10611088	30	2.5	30	82	4	82	22	11	34	31	1.90
10612428--10612545	54	2.3	50	83	9	155	51	1	0	45	1.17
10612518--10612552	15	2.3	15	95	0	61	51	2	0	45	1.16
10619357--10619397	18	2.1	20	86	13	59	63	4	4	26	1.35
10622589--10622882	64	4.5	65	69	13	172	29	16	13	40	1.87
10622390--10622841	193	2.3	194	82	3	514	29	16	13	39	1.88
10622820--10622966	78	1.9	76	81	5	179	27	22	11	38	1.89
10623147--10623331	49	3.8	49	77	16	167	29	11	3	55	1.52
10623198--10623349	49	3.1	49	81	3	144	29	13	2	54	1.52
10623362--10623468	36	3.0	36	79	8	110	29	14	12	43	1.81
10623478--10623594	50	2.4	47	77	11	119	26	11	11	51	1.71
10623469--10623606	49	2.8	49	77	5	145	23	10	10	55	1.65
10623529--10623629	49	2.1	49	81	3	114	20	8	10	59	1.58
10624024--10624071	20	2.7	18	81	12	55	37	0	4	58	1.18
10635539--10635593	22	2.4	24	82	11	71	43	0	0	56	0.99
10635606--10635647	20	2.3	17	88	12	57	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10639674--10639789	59	1.9	61	85	3	164	58	7	9	24	1.56
10641185--10641209	2	12.5	2	100	0	50	52	0	0	48	1.00
10642413--10642479	27	2.4	27	77	18	66	64	1	0	34	1.03
10642988--10643060	6	12.0	6	71	23	55	47	2	0	49	1.15
10642988--10643060	12	6.5	11	76	18	71	47	2	0	49	1.15
10643170--10643212	15	2.9	15	78	0	50	81	4	11	2	0.93
10644924--10644960	18	1.9	19	89	10	58	32	0	0	67	0.91
10646594--10646641	25	1.9	25	82	0	60	33	8	8	50	1.63
10646604--10646650	25	1.9	25	82	4	60	29	12	8	48	1.71
10647047--10647091	24	1.9	23	82	13	56	37	13	0	48	1.42
10654254--10654285	17	2.0	17	88	11	50	75	15	0	9	1.05
10659138--10659221	23	3.6	22	73	16	71	38	0	1	60	1.04
10659140--10659216	24	3.2	24	70	15	70	37	0	1	61	1.05
10659189--10659274	29	2.9	29	80	10	111	38	0	3	58	1.15
10659251--10659321	17	4.2	16	75	13	72	47	2	1	47	1.25
10664887--10664918	6	5.5	6	92	7	57	65	0	0	34	0.93
10666491--10666564	22	3.4	23	71	16	77	54	1	8	36	1.39
10666480--10666573	42	2.2	42	94	3	163	46	2	9	41	1.48
10666480--10666542	20	3.0	20	73	13	65	50	0	11	38	1.38
10666499--10666567	20	3.4	19	73	15	66	49	1	7	42	1.39
10682317--10682445	65	2.0	66	95	1	233	46	4	7	41	1.53
10682361--10682425	25	2.7	23	72	18	60	46	4	7	41	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10688793--10688835	22	2.0	22	85	0	59	46	9	9	34	1.68
10690254--10690297	5	8.8	5	85	9	54	52	0	0	47	1.00
10690311--10690427	3	40.3	3	76	16	77	35	2	1	59	1.21
10697906--10697983	39	2.0	39	84	0	102	29	32	11	26	1.91
10699021--10699046	9	2.9	9	100	0	52	30	0	0	69	0.89
10704362--10704395	11	3.1	11	91	0	50	47	2	0	50	1.16
10704440--10704481	19	2.3	19	95	4	77	33	0	0	66	0.92
10704447--10704483	9	3.9	10	82	10	51	35	0	0	64	0.94
10704518--10704557	13	3.1	13	85	0	53	57	0	2	40	1.12
10710310--10710358	16	3.0	16	78	3	53	30	8	0	61	1.25
10719298--10719328	14	2.2	14	94	0	53	54	0	9	35	1.33
10719715--10719773	21	2.8	22	80	7	61	54	3	3	38	1.34
10742046--10742072	14	1.9	14	100	0	54	22	18	22	37	1.95
10747436--10747469	8	3.8	9	88	11	52	82	5	11	0	0.83
10747435--10747485	9	5.4	9	77	15	50	86	3	9	0	0.70
10747432--10747477	17	2.7	17	89	0	74	86	4	8	0	0.68
10747432--10747478	18	2.7	18	86	3	69	87	4	8	0	0.67
10748997--10749046	25	2.0	25	88	7	75	34	10	6	50	1.60
10749020--10749142	42	2.9	42	78	9	124	30	13	15	39	1.86
10749022--10749155	43	3.1	41	71	14	103	28	13	17	40	1.88
10750322--10750558	41	5.8	41	87	4	268	30	4	11	53	1.56
10750374--10750414	10	3.8	11	78	15	50	36	0	7	56	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10750328--10750487	83	1.9	82	89	1	248	31	3	10	54	1.50
10750341--10750669	61	5.4	59	77	9	216	31	4	10	53	1.55
10750457--10750717	41	6.5	41	86	4	318	31	6	12	50	1.64
10750390--10750618	102	2.2	103	89	1	345	31	4	11	53	1.56
10750341--10750717	20	18.5	20	76	9	307	31	5	11	51	1.59
10750423--10750677	61	4.2	60	80	8	266	30	5	11	51	1.61
10750727--10750788	32	1.9	32	90	0	97	29	1	12	56	1.46
10750771--10750814	19	2.2	20	88	4	63	29	4	11	54	1.56
10752450--10752508	20	2.9	21	77	7	68	44	0	0	55	0.99
10754389--10754417	2	14.5	2	100	0	58	51	0	0	48	1.00
10755452--10755478	2	13.5	2	100	0	54	48	0	0	51	1.00
10759593--10759628	14	2.5	15	86	9	56	50	5	0	44	1.25
10767427--10767507	33	2.5	31	77	14	76	55	2	1	40	1.21
10769418--10769461	22	2.0	21	82	4	52	40	0	4	54	1.21
10769626--10769675	25	2.0	25	84	0	64	50	14	4	32	1.61
10770428--10770457	2	15.0	2	100	0	60	50	0	0	50	1.00
10774256--10774282	2	13.5	2	100	0	54	48	0	0	51	1.00
10775806--10775844	20	1.9	19	85	10	51	25	7	23	43	1.80
10779152--10779196	14	3.4	14	85	8	51	33	0	0	66	0.92
10780561--10780596	3	12.0	3	87	0	54	27	0	2	69	1.02
10781416--10781574	48	3.3	48	81	1	176	44	16	9	29	1.80
10781543--10781607	33	1.9	33	90	3	103	40	16	6	36	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10781495--10781649	81	1.9	82	85	1	213	41	18	7	31	1.79
10781572--10781754	49	3.8	48	84	2	206	40	14	10	34	1.81
10781583--10782036	227	2.0	227	99	0	899	37	16	11	35	1.84
10781821--10781981	49	3.3	49	84	0	198	40	14	12	32	1.83
10782799--10782845	23	2.0	24	83	4	60	8	12	0	78	0.95
10794256--10794300	3	15.0	3	100	0	90	33	0	0	66	0.92
10795568--10795741	62	2.8	59	78	10	197	40	5	9	44	1.60
10795550--10795749	62	3.2	59	77	14	190	38	6	10	45	1.62
10795719--10795783	33	2.0	33	81	6	78	27	3	16	52	1.59
10796257--10796383	62	2.0	63	83	7	161	35	7	11	46	1.67
10796990--10797019	10	3.1	10	95	4	53	36	0	0	63	0.95
10799879--10799904	2	13.0	2	100	0	52	50	0	0	50	1.00
10807039--10807065	2	13.5	2	100	0	54	51	0	48	0	1.00
10811482--10811666	65	2.9	65	79	10	207	27	22	25	24	2.00
10824065--10824212	74	2.0	74	94	0	260	45	4	10	39	1.58
10833189--10833234	8	5.8	8	87	7	67	63	0	0	36	0.95
10842286--10842319	18	2.0	16	88	11	50	55	0	0	44	0.99
10852501--10852545	21	2.2	20	92	7	74	53	0	0	46	1.00
10852538--10852607	6	12.0	6	76	19	51	65	0	0	34	0.93
10852536--10852599	17	3.8	16	83	8	83	65	0	0	34	0.93
10852559--10852605	23	2.0	24	87	4	69	65	0	0	34	0.93
10852545--10852609	27	2.4	28	82	5	71	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10854012--10854085	20	3.6	19	81	15	85	48	1	0	50	1.09
10854210--10854258	25	2.0	25	91	0	80	48	12	4	34	1.59
10855834--10855888	27	2.0	28	82	10	69	60	0	0	40	0.97
10858197--10858231	2	17.5	2	93	0	61	54	0	45	0	0.99
10858959--10859002	23	2.0	22	86	4	61	34	6	11	47	1.66
10860143--10860187	23	1.9	24	90	4	74	40	11	13	35	1.80
10868963--10869242	55	5.2	53	72	14	171	29	12	11	45	1.78
10868890--10869171	105	2.7	103	79	8	284	30	13	11	43	1.80
10869343--10869389	24	2.0	24	87	8	69	42	0	0	57	0.98
10872414--10872511	31	3.2	31	84	8	119	34	3	7	55	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109