genome.fa.s35.2.7.7.80.10.50.1000.55.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  55  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10872751--10872793	20	2.2	20	87	8	61	48	0	4	46	1.22
10872811--10872846	18	1.9	18	88	5	54	47	0	0	52	1.00
10872811--10872864	19	2.9	18	83	10	56	46	1	1	50	1.23
10878182--10878463	105	2.7	103	78	8	275	30	13	11	44	1.79
10878395--10878534	55	2.5	55	80	8	160	30	10	12	45	1.77
10878635--10878681	24	2.0	24	87	8	69	42	0	0	57	0.98
10880525--10880574	3	16.7	3	95	0	91	70	30	0	0	0.88
10880573--10880598	3	8.7	3	100	0	52	69	0	0	30	0.89
10881247--10881312	19	3.5	19	82	12	91	59	9	0	31	1.29
10881239--10881312	37	2.0	36	92	2	121	59	9	1	29	1.37
10881461--10881516	18	3.0	19	76	23	73	57	10	0	32	1.33
10881451--10881531	37	2.2	37	90	0	126	56	9	3	29	1.49
10883024--10883254	64	3.7	64	74	10	219	31	13	15	39	1.86
10883055--10883284	124	1.9	123	83	6	304	32	13	15	38	1.86
10883177--10883414	126	1.9	126	82	7	306	36	11	13	38	1.81
10883308--10883485	62	2.9	62	80	6	173	34	14	9	41	1.78
10883660--10883771	16	7.0	15	69	18	66	28	0	7	64	1.20
10883748--10883876	59	2.2	60	80	10	140	28	4	3	63	1.29
10884386--10884432	20	2.4	20	85	3	60	23	27	21	27	1.99
10884662--10884687	8	3.2	8	100	0	52	23	50	26	0	1.50
10884871--10885514	57	10.8	59	82	11	757	45	8	12	33	1.71
10884876--10885527	240	2.7	233	86	7	841	46	8	11	33	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10889359--10889403	11	4.0	11	85	5	63	84	0	11	4	0.76
10889343--10889407	23	2.7	23	75	15	69	78	0	15	6	0.94
10889359--10889399	10	3.8	10	87	12	55	85	0	9	4	0.73
10889339--10889400	12	4.9	12	72	16	54	80	0	14	4	0.87
10890663--10890948	40	7.0	40	87	8	398	22	17	21	39	1.92
10890663--10890948	42	7.0	40	86	10	382	22	17	21	39	1.92
10890663--10890948	83	3.5	82	89	3	425	22	17	21	39	1.92
10890955--10890999	8	5.6	8	89	5	65	91	8	0	0	0.43
10890955--10890991	1	37.0	1	88	0	56	94	5	0	0	0.30
10890955--10890991	16	2.3	16	100	0	74	94	5	0	0	0.30
10891722--10891776	27	2.2	24	80	9	56	34	5	20	40	1.75
10892379--10892897	116	4.4	116	88	7	700	45	9	12	33	1.73
10892379--10892897	60	8.9	57	83	11	601	45	9	12	33	1.73
10895780--10895816	19	1.9	19	89	10	58	59	18	0	21	1.38
10897146--10897193	3	16.0	3	95	0	87	64	0	2	33	1.05
10904530--10904568	2	19.5	2	83	0	51	48	0	5	46	1.24
10904802--10904830	14	2.0	15	93	6	51	65	0	0	34	0.93
10911061--10911149	41	2.2	41	81	4	99	40	17	19	22	1.91
10911104--10911251	55	2.7	55	85	2	163	40	19	19	20	1.92
10911159--10911423	55	4.8	55	80	4	194	43	17	17	21	1.88
10916072--10916103	16	2.0	16	100	0	64	50	6	0	43	1.27
10919870--10919907	6	6.3	6	93	0	58	34	0	44	21	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10923141--10923193	22	2.4	22	93	6	90	49	0	0	50	1.00
10929922--10929976	27	2.0	28	82	10	69	60	0	0	40	0.97
10932285--10932327	2	21.5	2	100	0	86	51	0	48	0	1.00
10933378--10933430	18	2.9	18	94	5	90	49	0	11	39	1.39
10934239--10934283	23	1.9	24	90	4	74	40	11	13	35	1.80
10941962--10942130	65	2.6	64	78	10	191	37	13	11	37	1.80
10942075--10942230	60	2.5	62	78	8	167	33	11	14	41	1.81
10944574--10944622	24	2.0	24	84	7	64	48	18	4	28	1.66
10944923--10944959	19	1.9	19	89	10	58	59	18	0	21	1.38
10945253--10945298	20	2.3	19	82	17	58	65	2	2	30	1.16
10949334--10949397	25	2.9	22	75	22	62	39	1	0	59	1.07
10949996--10950036	14	2.6	16	81	18	59	60	0	2	36	1.10
10956393--10956544	55	2.8	55	83	0	196	42	17	19	20	1.90
10956565--10956701	55	2.5	55	84	2	150	45	13	16	25	1.83
10959415--10959453	12	3.2	12	85	0	51	35	0	43	20	1.52
10960207--10960231	3	8.3	3	100	0	50	0	64	0	36	0.94
10962696--10962748	22	2.4	22	93	6	90	49	0	0	50	1.00
10967534--10967565	12	2.7	12	90	0	55	50	0	0	50	1.00
10972118--10972184	34	2.0	34	91	5	109	17	7	20	53	1.68
10972569--10972594	12	2.2	12	100	0	52	30	0	0	69	0.89
10977138--10977206	27	2.7	27	76	10	65	44	0	1	53	1.09
10978812--10978866	22	2.4	24	75	9	60	36	3	0	60	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10981264--10981313	25	2.1	25	88	7	77	38	8	0	54	1.30
10981482--10981548	34	2.0	34	87	0	98	29	7	0	62	1.22
10981745--10981814	36	1.9	36	82	5	88	64	2	4	28	1.27
10983220--10983316	31	3.2	31	84	7	117	36	3	6	54	1.41
10983375--10983469	49	2.0	48	81	6	111	55	6	1	36	1.32
10983552--10983594	20	2.2	20	87	8	61	48	0	4	46	1.22
10985270--10985299	2	15.0	2	100	0	60	50	0	0	50	1.00
10987878--10987919	21	2.0	21	100	0	84	23	0	33	42	1.55
10989380--10989408	14	2.0	15	93	6	51	41	0	0	58	0.98
10991565--10991598	10	3.3	10	87	4	50	26	0	2	70	1.01
10991937--10991981	23	1.9	24	82	13	58	46	2	6	44	1.42
10994098--10994124	11	2.5	11	100	0	54	62	0	37	0	0.95
10996144--10996190	16	3.0	16	84	9	53	68	0	6	25	1.13
11005585--11005697	48	2.4	48	83	3	147	13	10	47	28	1.75
11005572--11005784	117	1.8	117	87	4	322	12	10	47	29	1.74
11005710--11005886	48	3.7	49	79	6	191	14	9	50	25	1.73
11005578--11005814	117	2.0	117	83	4	300	13	10	48	27	1.76
11005837--11005900	27	2.4	27	78	5	67	14	9	53	23	1.69
11009381--11009411	15	2.1	15	93	0	53	22	0	0	77	0.77
11017041--11017098	29	2.0	29	96	0	107	27	18	37	15	1.92
11017123--11017194	37	1.9	37	91	0	117	27	18	31	22	1.97
11026019--11026064	20	2.2	21	84	7	58	8	8	10	71	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11026308--11026350	22	2.0	22	95	0	77	48	0	4	46	1.22
11026268--11026334	35	2.0	34	85	8	93	43	0	2	53	1.16
11026270--11026344	35	2.1	35	80	9	82	46	0	2	50	1.15
11026306--11026389	22	3.7	22	79	14	66	47	0	3	48	1.19
11028030--11028366	58	5.7	58	89	6	484	34	12	8	44	1.73
11028030--11028366	59	5.7	57	89	8	482	34	12	8	44	1.73
11028261--11028355	30	3.2	30	66	16	88	34	13	8	43	1.75
11028444--11028497	12	4.6	12	80	13	51	81	3	1	12	0.91
11028447--11028512	8	9.4	7	76	16	50	81	4	1	12	0.90
11028447--11028495	20	2.5	19	84	12	64	81	4	2	12	0.91
11028831--11028868	20	1.9	20	94	0	67	23	18	26	31	1.97
11028832--11028876	20	2.3	20	88	3	65	26	22	24	26	2.00
11032708--11032764	19	2.9	19	76	19	55	49	1	0	49	1.11
11032700--11032765	19	3.3	18	73	23	53	45	1	0	53	1.09
11035623--11035767	52	2.8	51	87	2	209	30	16	11	42	1.83
11036360--11036423	25	2.6	25	87	4	87	35	9	25	29	1.87
11037932--11037979	23	2.1	23	100	0	96	31	0	20	47	1.50
11038886--11038947	25	2.5	24	78	14	65	37	14	20	27	1.92
11042679--11042779	18	5.7	17	70	20	73	49	2	0	47	1.16
11042719--11042761	22	2.0	22	95	0	77	46	4	0	48	1.22
11043239--11043278	19	2.1	19	100	0	80	25	10	32	32	1.89
11046605--11046727	63	2.0	63	88	3	185	27	27	24	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11047049--11047095	16	2.7	18	81	18	64	29	6	6	57	1.49
11054188--11054217	15	2.0	15	93	0	51	83	0	0	16	0.65
11055323--11055423	52	2.0	49	84	5	130	56	5	9	27	1.55
11055572--11055653	43	1.9	43	92	0	137	32	0	23	43	1.54
11056238--11056335	49	2.0	49	84	4	126	48	5	13	32	1.64
11057758--11057968	48	4.4	48	87	2	246	25	47	11	15	1.78
11057889--11058120	117	2.0	117	84	3	306	29	47	10	12	1.75
11057995--11058107	48	2.4	48	81	3	138	29	46	10	13	1.76
11060500--11060551	24	2.2	24	85	0	68	23	32	9	34	1.87
11066159--11066183	3	8.3	3	100	0	50	32	0	36	32	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109