genome.fa.s35.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  16  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2596360--2596483	34	3.7	32	79	13	117	51	8	0	39	1.37
2597916--2597948	10	3.4	10	87	4	50	78	0	0	21	0.75
2597909--2597943	16	2.2	16	90	10	54	74	0	0	25	0.82
2599215--2599241	2	13.5	2	100	0	54	51	0	0	48	1.00
2599264--2599316	24	2.2	25	86	3	72	33	5	16	43	1.72
2603750--2603801	21	2.6	19	77	14	59	67	1	5	25	1.23
2608887--2608915	2	14.5	2	100	0	58	51	0	0	48	1.00
2610359--2610391	17	1.9	17	88	11	50	54	0	0	45	0.99
2610684--2610718	14	2.6	13	82	8	52	25	0	0	74	0.82
2611279--2611327	26	2.0	24	84	8	62	75	8	2	14	1.12
2611692--2611721	13	2.4	13	94	5	53	76	6	0	16	0.99
2616399--2616453	10	5.5	10	72	14	51	25	1	3	69	1.15
2616399--2616447	21	2.5	20	81	12	57	26	2	4	67	1.19
2616434--2616485	21	2.5	20	82	14	61	23	1	0	75	0.91
2616434--2616482	17	2.9	17	82	17	59	24	2	0	73	0.94
2616441--2616483	13	3.3	13	84	15	54	23	2	0	74	0.93
2621118--2621170	23	2.4	21	76	17	54	43	9	18	28	1.81
2621147--2621210	32	2.0	32	96	0	119	45	6	17	31	1.73
2621305--2621341	2	18.5	2	100	0	74	51	0	0	48	1.00
2623257--2623281	5	5.0	5	100	0	50	80	0	20	0	0.72
2626362--2626410	25	2.0	25	84	8	64	40	0	0	59	0.98
2626537--2626601	27	2.3	29	82	15	91	41	3	0	55	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2626587--2626650	21	2.8	22	76	17	67	42	4	1	51	1.32
2626793--2626835	16	2.7	16	75	13	52	41	0	4	53	1.21
2631073--2631123	5	10.6	5	79	8	61	17	3	1	76	1.03
2631085--2631123	14	2.7	15	84	11	55	17	5	0	76	0.96
2631423--2631464	12	3.6	12	77	3	50	26	7	2	64	1.32
2631751--2631794	3	14.7	3	95	0	79	34	2	0	63	1.07
2634910--2635040	3	41.0	3	79	11	118	37	1	4	56	1.29
2634890--2635017	43	3.0	43	93	6	235	39	2	7	50	1.42
2634890--2635014	40	3.0	40	96	3	223	40	2	7	50	1.43
2636611--2636660	25	2.0	25	92	0	82	12	14	26	48	1.78
2637087--2637468	206	1.9	207	80	6	461	44	8	2	44	1.47
2640507--2640539	2	16.5	2	100	0	66	51	0	0	48	1.00
2646183--2646237	22	2.4	23	75	9	58	58	5	3	32	1.38
2646385--2646452	25	2.6	25	77	11	75	55	0	0	44	0.99
2646498--2646545	24	2.0	24	88	8	71	52	12	4	31	1.58
2646679--2646743	24	2.7	25	77	15	66	43	1	3	52	1.26
2646687--2646809	36	3.1	40	71	17	105	47	1	1	48	1.21
2646779--2646831	27	2.1	24	82	10	61	41	0	3	54	1.18
2648760--2648805	18	2.5	19	75	6	51	58	2	4	34	1.30
2649486--2649560	20	3.8	20	75	10	55	62	2	0	34	1.09
2650610--2651161	276	2.0	275	98	1	1061	34	8	15	41	1.78
2651305--2651350	12	3.8	12	83	8	58	13	0	8	78	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2651312--2651361	18	2.7	18	84	9	57	14	0	8	78	0.97
2651330--2651364	18	1.9	18	94	0	61	11	0	5	82	0.82
2651703--2651732	16	1.9	15	93	6	51	53	16	10	20	1.71
2653475--2653558	15	5.4	15	69	16	55	25	3	26	45	1.70
2653522--2653572	23	2.2	23	82	10	59	19	1	29	49	1.60
2653560--2653634	31	2.5	31	82	10	100	28	6	21	44	1.77
2656056--2656093	18	2.1	19	90	5	60	42	0	21	36	1.53
2656606--2656679	19	3.7	19	70	21	62	17	5	16	60	1.53
2656695--2656751	29	1.9	29	85	3	78	26	10	17	45	1.81
2657819--2657879	31	1.9	31	90	6	95	67	3	6	22	1.29
2662985--2663016	6	5.3	6	92	0	55	0	18	0	81	0.70
2663592--2663635	11	4.1	11	80	13	56	50	0	2	47	1.13
2664675--2664737	23	2.8	22	72	9	56	41	1	0	57	1.08
2665078--2665107	16	1.9	16	93	6	53	53	0	16	30	1.44
2666042--2666111	20	3.5	20	82	9	72	40	1	0	58	1.07
2666045--2666111	30	2.2	30	78	0	71	38	1	0	59	1.06
2667259--2667298	19	2.1	20	86	9	57	62	2	5	30	1.29
2671379--2671445	23	3.1	21	82	14	84	32	14	0	52	1.43
2671565--2671604	21	1.9	21	89	0	62	30	27	0	42	1.56
2674037--2674088	20	2.5	20	79	17	54	34	0	3	61	1.14
2676091--2676146	25	2.2	26	78	15	64	37	1	1	58	1.19
2676169--2676234	30	2.2	30	84	10	82	54	4	6	34	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2676278--2676377	52	1.9	52	93	4	175	46	1	10	43	1.44
2679322--2679381	29	2.1	28	84	3	75	48	3	1	46	1.28
2679328--2679433	36	2.8	35	75	22	99	47	0	0	50	1.13
2679347--2679440	41	2.4	39	85	10	120	44	2	0	53	1.12
2679573--2679615	22	2.0	22	86	9	61	60	2	0	37	1.10
2679597--2679635	17	2.5	15	87	8	51	56	2	0	41	1.13
2679592--2679627	17	2.1	17	94	0	63	58	0	0	41	0.98
2679623--2679677	23	2.3	24	75	3	58	52	3	1	41	1.29
2679811--2679867	26	2.2	26	84	6	71	42	3	0	54	1.17
2679803--2679861	18	3.3	18	81	9	68	44	1	0	54	1.10
2679803--2679861	9	6.7	9	70	18	52	44	1	0	54	1.10
2679823--2679875	26	2.0	26	85	7	72	35	5	1	56	1.34
2684596--2684871	112	2.5	109	78	8	268	47	2	10	39	1.53
2684728--2684970	111	2.2	110	80	8	255	48	2	8	40	1.49
2684972--2685052	37	2.2	37	84	0	99	49	8	1	40	1.41
2687841--2687871	2	15.5	2	100	0	62	51	0	0	48	1.00
2689653--2689716	22	3.0	21	77	6	58	59	1	0	39	1.07
2690297--2690341	21	2.1	21	88	8	65	66	8	2	22	1.30
2695444--2695510	34	2.0	34	96	0	125	28	7	17	46	1.75
2695441--2695517	34	2.3	32	87	10	118	28	9	15	46	1.76
2701213--2701256	24	1.9	23	86	9	63	79	0	11	9	0.93
2702259--2702386	23	5.8	21	76	9	94	38	6	10	44	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2702540--2702671	52	2.6	49	77	8	129	31	10	12	46	1.75
2702702--2702822	18	6.7	18	72	7	102	28	8	16	46	1.76
2702540--2702733	105	1.9	103	83	4	255	31	10	12	44	1.76
2702659--2702828	36	4.8	36	77	8	125	29	10	15	44	1.80
2702567--2702787	54	4.2	53	74	11	175	31	9	13	45	1.76
2702655--2702822	54	3.1	54	77	5	144	30	9	14	45	1.77
2702832--2702874	19	2.3	19	87	0	59	37	4	9	48	1.56
2702953--2703044	21	4.2	22	69	8	53	35	8	10	44	1.70
2703313--2703337	12	2.1	12	100	0	50	32	8	0	60	1.26
2703319--2703368	16	3.3	16	75	16	52	26	6	0	68	1.13
2703328--2703379	20	2.6	19	80	20	61	23	3	0	73	1.00
2703413--2703450	3	12.7	3	100	0	76	34	0	0	65	0.93
2710208--2710832	117	5.4	114	85	8	756	34	12	8	45	1.72
2710208--2710832	57	10.8	57	83	9	756	34	12	8	45	1.72
2710855--2710887	10	3.3	10	87	12	50	81	0	0	18	0.68
2710855--2710892	19	2.0	19	85	10	51	78	0	2	18	0.86
2710932--2710975	23	1.9	23	90	0	70	77	6	9	6	1.13
2711973--2712077	16	6.6	16	69	20	60	64	7	0	27	1.20
2711941--2712068	35	3.6	34	73	19	95	62	6	0	30	1.25
2718091--2718119	11	2.5	12	88	11	51	65	0	0	34	0.93
2718331--2718360	13	2.4	12	94	5	51	50	6	0	43	1.28
2719205--2719256	26	1.9	27	84	7	70	34	3	26	34	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2719431--2719680	129	1.9	131	81	8	305	45	5	6	42	1.54
2724185--2724240	25	2.3	25	96	3	105	46	0	25	28	1.53
2731820--2731848	11	2.5	12	88	11	51	34	0	0	65	0.93
2737204--2737248	21	2.1	21	83	0	54	55	2	0	42	1.12
2739113--2739433	161	2.0	163	84	3	425	43	13	9	33	1.76
2745386--2746319	493	1.9	492	82	5	1172	38	13	11	37	1.80
2745783--2746637	429	2.0	428	84	3	1103	38	13	10	37	1.79
2747380--2747490	28	3.9	28	89	5	154	22	4	24	48	1.69
2747511--2747536	3	8.7	3	100	0	52	30	0	0	69	0.89
2747594--2747635	22	1.9	22	85	0	57	0	30	2	66	1.04

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109