genome.fa.s35.2.7.7.80.10.50.1000.85.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  85  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17148160--17148215	30	2.0	27	89	10	85	19	5	1	73	1.12
17149140--17149215	39	1.9	39	97	0	143	19	14	6	59	1.57
17160165--17160310	3	52.0	3	67	24	70	36	2	5	56	1.34
17160168--17160310	5	27.2	5	74	20	98	36	2	5	55	1.35
17160165--17160310	8	17.1	8	71	21	86	36	2	5	56	1.34
17161115--17161145	13	2.4	13	88	0	53	16	0	9	74	1.07
17161136--17161202	21	3.2	20	74	12	55	20	4	4	70	1.23
17161152--17161203	21	2.5	21	84	6	61	23	3	1	71	1.13
17164754--17164885	61	2.1	62	85	1	185	18	18	12	50	1.78
17175143--17175185	13	3.3	13	87	9	61	76	9	9	4	1.14
17176035--17176070	18	1.9	19	88	5	56	30	41	25	2	1.69
17176130--17176171	19	2.2	19	83	8	50	21	2	0	76	0.90
17176790--17177167	194	2.0	190	89	2	585	36	11	15	36	1.84
17180062--17180121	31	1.9	31	86	3	84	50	8	6	35	1.59
17186271--17186312	21	2.0	21	95	0	75	28	33	16	21	1.95
17208573--17208604	13	2.5	13	95	5	57	87	0	9	3	0.64
17209992--17210580	99	6.0	99	83	1	671	25	14	19	40	1.89
17209992--17210611	197	3.1	197	83	1	749	25	14	19	40	1.90
17210748--17210870	49	2.5	49	87	0	174	30	10	17	42	1.82
17211008--17211055	12	3.9	12	83	5	51	6	6	2	85	0.81
17211013--17211060	23	2.0	25	88	8	73	4	10	2	83	0.87
17211018--17211071	23	2.3	23	80	0	63	7	11	1	79	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17212087--17212119	12	3.0	11	87	12	50	72	0	0	27	0.85
17217549--17217590	13	3.2	13	83	6	50	69	7	2	21	1.25
17220411--17220514	40	2.6	41	83	6	124	37	21	8	32	1.84
17224235--17224263	3	9.7	3	100	0	58	31	0	0	68	0.89
17225439--17225521	33	2.5	34	88	7	125	44	10	3	40	1.57
17225439--17225536	33	2.9	33	75	17	94	45	9	5	39	1.58
17226201--17226260	21	2.7	22	87	10	70	53	0	0	46	1.00
17226209--17226261	21	2.5	22	88	11	85	54	0	0	45	0.99
17227666--17227714	16	2.8	18	84	12	66	2	18	0	79	0.83
17227666--17227709	19	2.4	18	88	7	63	2	15	0	81	0.78
17227748--17227786	8	4.6	8	84	12	51	0	20	0	79	0.73
17231152--17231190	19	2.1	19	90	9	62	30	0	2	66	1.05
17231771--17231880	7	15.4	7	69	18	50	3	17	0	78	0.95
17231777--17231883	22	4.7	22	70	18	67	3	15	0	79	0.93
17231854--17231884	11	2.9	11	95	4	55	0	12	0	87	0.55
17231777--17231873	40	2.4	42	78	15	105	4	16	1	78	0.96
17231943--17231972	6	4.8	6	95	4	51	0	16	0	83	0.65
17233087--17233171	7	12.0	7	76	9	57	4	3	10	81	0.97
17233206--17233445	46	5.3	45	75	10	170	43	10	9	37	1.71
17233576--17233634	31	1.9	31	89	0	91	38	25	10	25	1.87
17233766--17233838	33	2.2	33	85	0	92	36	19	15	28	1.92
17234013--17234058	13	3.5	13	82	11	58	0	21	4	73	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17235005--17235046	22	2.0	20	90	9	66	40	4	23	30	1.75
17235009--17235055	22	2.1	22	84	7	60	40	4	21	34	1.73
17235168--17235218	7	7.3	7	79	0	57	19	0	33	47	1.50
17235168--17235225	14	4.2	13	80	12	53	18	0	32	48	1.49
17235172--17235225	21	2.5	20	85	11	72	18	0	33	48	1.49
17235243--17235282	14	2.9	14	80	0	53	17	7	32	42	1.77
17235300--17235355	17	3.3	17	87	5	69	33	1	19	44	1.61
17241140--17241758	211	3.0	207	85	3	807	41	15	12	30	1.84
17242062--17242117	23	2.5	20	75	25	51	42	7	0	50	1.30
17242499--17242578	32	2.4	34	83	10	112	46	6	6	41	1.54
17243650--17243690	15	2.5	17	88	7	59	34	0	0	65	0.93
17243819--17243849	14	2.1	15	94	5	55	41	19	0	38	1.51
17243882--17243911	15	2.0	15	93	0	51	83	0	0	16	0.65
17244481--17244507	2	13.5	2	100	0	54	51	0	0	48	1.00
17246945--17247016	36	2.0	36	83	0	90	37	9	8	44	1.68
17247212--17247245	16	2.1	16	88	0	50	26	0	2	70	1.01
17251694--17251745	24	2.2	24	82	6	61	32	0	3	63	1.12
17252303--17252757	22	21.3	22	67	15	93	46	7	10	35	1.66
17252976--17253030	22	2.7	19	74	15	56	47	1	5	45	1.36
17253009--17253066	22	2.6	22	78	5	64	51	8	3	36	1.49
17253101--17253170	22	3.2	22	79	0	68	41	14	7	37	1.73
17253489--17253573	22	3.9	22	73	11	66	44	7	11	36	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17253453--17253567	44	2.6	44	76	2	106	47	5	12	34	1.63
17253511--17253807	22	13.4	21	69	17	140	47	6	9	36	1.62
17253706--17253834	43	3.0	43	85	5	154	47	6	6	38	1.58
17253874--17253948	22	3.4	23	85	7	68	57	5	8	29	1.50
17253908--17254001	22	4.3	22	78	8	75	51	4	7	37	1.50
17253877--17254006	44	3.0	44	76	8	113	51	4	8	35	1.53
17253941--17254014	22	3.4	22	81	7	96	47	2	8	41	1.47
17253932--17254244	44	6.9	44	71	12	163	46	6	8	38	1.60
17253976--17254020	22	2.0	22	86	0	63	53	4	6	35	1.47
17254037--17254104	22	3.1	22	76	4	66	42	4	8	44	1.55
17254121--17254217	22	4.4	22	74	10	90	47	7	7	38	1.59
17254094--17254217	66	1.9	66	81	3	151	47	8	6	37	1.61
17254072--17254200	11	11.7	11	65	6	55	48	7	6	37	1.57
17254230--17254298	22	3.1	22	85	0	84	44	5	7	42	1.56
17254576--17254617	22	1.9	22	95	0	75	57	11	2	28	1.47
17254574--17254721	21	7.0	21	73	9	86	49	8	4	37	1.55
17254574--17254638	22	3.0	21	81	2	67	53	10	1	33	1.45
17254574--17254714	42	3.3	42	76	7	124	48	9	4	36	1.57
17254590--17254721	63	2.1	64	81	7	153	49	8	5	37	1.56
17256950--17257043	9	11.2	8	69	18	50	11	9	2	76	1.10
17256969--17257043	8	9.0	8	70	13	53	12	8	2	77	1.08
17256975--17257013	17	2.3	17	86	0	51	10	5	0	84	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17267016--17267048	17	1.9	17	93	0	57	36	0	0	63	0.95
17277130--17277389	10	26.5	10	66	12	94	56	5	1	36	1.31
17277154--17277270	57	2.0	58	80	9	132	50	5	0	44	1.24
17277267--17277428	9	17.1	9	68	17	80	58	4	2	33	1.33
17277293--17277419	20	6.3	20	72	13	84	57	4	2	35	1.33
17277307--17277425	29	4.1	27	75	16	105	58	3	2	35	1.28
17277500--17277543	19	2.4	18	84	3	52	56	0	2	40	1.11
17277505--17277559	26	2.1	25	83	12	67	63	0	3	32	1.12
17277553--17277584	16	2.0	16	93	0	55	40	3	6	50	1.43
17277610--17277694	35	2.5	35	79	9	86	45	2	1	50	1.22
17277670--17277760	28	3.1	29	80	6	76	42	1	6	49	1.36
17277889--17277954	30	2.2	29	84	5	87	37	0	4	57	1.19
17277594--17277954	9	38.6	9	66	13	79	39	2	4	53	1.35
17277871--17277948	20	3.8	20	73	11	70	39	1	5	53	1.31
17277870--17277955	11	8.6	10	73	14	70	37	1	4	56	1.27
17278376--17278414	16	2.5	15	88	8	60	66	0	0	33	0.92
17279428--17279461	3	11.7	3	93	6	61	67	0	0	32	0.91
17291324--17291384	26	2.2	29	85	8	83	52	4	3	39	1.39
17291389--17291429	20	2.0	20	86	9	57	46	0	2	51	1.14
17292946--17292992	15	3.1	16	81	6	53	46	4	2	46	1.34
17294941--17294989	17	2.9	16	80	14	53	51	10	6	32	1.61
17294940--17294992	18	3.0	18	76	20	58	50	9	5	33	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17295254--17295296	20	2.2	20	86	0	59	55	6	4	32	1.47
17295268--17295323	23	2.5	23	82	2	60	60	12	3	23	1.47
17295208--17295416	105	2.0	109	83	7	277	55	12	3	27	1.54
17295353--17295422	24	3.0	22	80	10	86	60	10	2	27	1.43
17295383--17295564	55	3.4	54	75	7	183	54	12	4	29	1.56
17295433--17295523	23	3.8	23	70	17	60	50	14	5	29	1.65
17295543--17295746	24	9.0	24	75	15	211	54	10	2	31	1.50
17295536--17295746	44	4.7	45	83	9	236	54	10	2	32	1.49
17295232--17295602	105	3.6	103	73	14	262	54	12	4	28	1.57
17295752--17295789	20	2.0	18	90	10	58	47	10	7	34	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109