genome.fa.s35.2.7.7.80.10.50.1000.88.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  88  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17772877--17772965	45	2.0	45	93	0	151	38	8	11	41	1.72
17774346--17774431	34	2.5	34	79	3	93	40	15	10	33	1.81
17774457--17774523	34	2.0	34	81	0	80	38	10	13	37	1.79
17777262--17777870	63	9.7	63	72	15	304	36	11	12	38	1.81
17777413--17777655	131	1.9	131	85	3	346	34	12	11	40	1.80
17777350--17777846	193	2.6	193	78	12	494	36	12	12	38	1.81
17777728--17777870	62	2.3	61	79	7	162	37	13	12	36	1.82
17782098--17782342	126	1.9	125	82	6	307	42	4	9	43	1.58
17782288--17782333	16	2.9	15	81	12	56	41	0	4	54	1.20
17782294--17782523	112	2.1	112	97	0	435	44	6	7	40	1.60
17782912--17782972	29	2.0	31	93	6	108	47	6	9	36	1.63
17782903--17783075	90	1.9	91	83	9	228	43	5	15	36	1.69
17783039--17783236	55	3.7	55	70	8	158	42	3	18	35	1.66
17783040--17783251	106	2.0	105	82	4	257	42	3	17	35	1.67
17785878--17786386	58	8.7	59	78	10	370	37	10	5	46	1.62
17786077--17786117	17	2.4	17	88	8	57	48	0	4	46	1.23
17785871--17786407	119	4.6	117	77	11	462	37	9	5	47	1.61
17785924--17786406	60	8.1	60	77	10	433	37	9	5	47	1.59
17787667--17787827	43	3.7	43	82	4	187	45	18	13	23	1.84
17787725--17787920	108	1.8	107	87	1	293	45	17	13	23	1.84
17787866--17788053	83	2.3	81	83	4	214	44	19	11	25	1.83
17787839--17788053	42	5.2	42	83	7	208	43	19	12	24	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17788474--17788517	20	2.2	20	83	4	52	36	15	11	36	1.84
17788420--17788659	79	3.0	80	88	2	358	34	20	12	32	1.90
17793829--17794252	60	7.2	59	81	7	457	36	9	6	48	1.60
17793969--17794117	57	2.6	58	81	7	169	36	11	5	46	1.63
17794757--17794795	19	2.1	19	90	9	62	41	25	15	17	1.89
17796781--17796834	24	2.2	24	90	0	81	59	7	14	18	1.58
17797684--17797855	94	1.8	94	88	0	263	33	7	26	32	1.84
17801454--17801716	135	2.0	130	91	5	429	19	33	10	36	1.86
17808546--17808582	15	2.5	14	91	8	56	45	0	0	54	1.00
17808546--17808582	7	5.0	7	90	9	56	45	0	0	54	1.00
17808541--17808599	22	2.7	22	75	12	59	44	0	0	55	0.99
17808859--17808892	17	2.0	17	94	0	59	35	2	5	55	1.39
17818614--17818642	14	2.1	14	100	0	58	41	6	20	31	1.79
17835080--17835117	18	2.2	17	90	4	58	10	5	7	76	1.15
17835080--17835117	17	2.2	18	90	4	60	10	5	7	76	1.15
17837184--17837264	37	2.2	37	84	4	101	33	4	16	45	1.68
17840933--17841357	60	7.2	58	79	8	401	37	8	5	48	1.57
17841073--17841282	58	3.6	59	83	5	192	40	10	4	45	1.57
17841868--17841906	19	2.1	19	90	9	62	41	25	15	17	1.89
17842285--17842347	4	14.5	4	79	17	56	71	4	0	23	1.05
17842289--17842347	22	2.7	22	86	5	75	71	5	0	23	1.06
17842272--17842347	27	2.9	26	82	11	84	68	5	1	25	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17843891--17843944	24	2.2	24	90	0	81	59	7	14	18	1.58
17844801--17844972	94	1.8	94	85	0	245	33	8	26	30	1.87
17848564--17848826	135	2.0	130	91	5	429	19	32	10	36	1.86
17855650--17855686	15	2.5	14	91	8	56	45	0	0	54	1.00
17855650--17855686	7	5.0	7	90	9	56	45	0	0	54	1.00
17855645--17855703	22	2.7	22	75	12	59	44	0	0	55	0.99
17855967--17856000	17	2.0	17	94	0	59	35	2	5	55	1.39
17865733--17865761	14	2.1	14	100	0	58	41	6	20	31	1.79
17874788--17874837	21	2.4	20	78	15	57	40	0	0	60	0.97
17874995--17875050	15	3.5	15	80	17	60	26	3	0	69	1.04
17875452--17875541	5	19.6	5	70	24	56	1	20	43	35	1.59
17875451--17875536	13	5.9	15	72	18	67	1	19	43	36	1.59
17875451--17875542	32	2.9	32	93	0	157	1	20	42	35	1.60
17876351--17876404	23	2.3	23	87	9	74	3	5	12	77	1.07
17887843--17887923	37	2.2	37	84	4	101	33	4	16	45	1.68
17891103--17891675	286	2.0	286	97	0	1092	38	25	14	21	1.92
17902490--17902546	24	2.4	24	96	0	105	33	14	15	36	1.88
17906632--17906683	22	2.5	19	77	22	59	59	0	0	40	0.97
17906634--17906688	23	2.3	23	78	12	67	56	0	0	43	0.99
17912588--17912644	24	2.4	24	96	0	105	33	14	15	36	1.88
17924293--17924381	36	2.6	33	77	10	88	35	8	16	38	1.81
17924250--17924566	68	4.6	71	75	7	220	38	11	18	30	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17924392--17924588	103	1.9	103	84	2	261	40	11	19	28	1.86
17924224--17924591	35	10.6	34	73	8	208	37	11	19	31	1.87
17925083--17925254	35	5.1	34	75	10	129	32	19	11	36	1.87
17927352--17927384	2	16.5	2	100	0	66	51	0	0	48	1.00
17928800--17928857	17	3.4	17	69	7	55	37	0	1	60	1.07
17932747--17932792	17	2.6	18	82	10	58	23	2	8	65	1.32
17935158--17935203	18	2.9	16	81	15	51	47	23	0	28	1.52
17935158--17935207	15	3.2	16	76	21	52	50	22	0	28	1.49
17935793--17935870	34	2.3	34	84	2	104	35	12	20	30	1.90
17938886--17938913	2	14.0	2	100	0	56	50	0	0	50	1.00
17939730--17939762	15	2.2	15	94	0	57	12	42	0	45	1.41
17945294--17945352	31	1.9	31	96	0	109	22	30	23	23	1.99
17945365--17945405	20	2.0	20	95	0	73	41	31	21	4	1.74
17945764--17945806	5	8.2	5	85	10	59	18	39	39	2	1.64
17945814--17945838	1	25.0	1	100	0	50	0	0	0	100	0.00
17945848--17946477	159	4.0	159	92	3	1006	29	14	17	38	1.89
17950086--17950110	13	1.9	13	100	0	50	72	0	16	12	1.13
17950090--17950139	15	3.3	15	86	8	57	82	0	14	4	0.82
17950109--17950153	18	2.6	18	89	10	67	80	0	17	2	0.82
17950107--17950181	38	2.0	37	87	5	107	76	0	20	4	0.95
17950113--17950177	30	2.2	29	86	5	87	75	0	20	4	0.98
17950107--17950169	22	3.2	21	80	19	82	77	0	19	3	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17950108--17950169	10	6.4	9	76	23	56	77	0	19	3	0.90
17950219--17950243	1	25.0	1	100	0	50	100	0	0	0	0.00
17951365--17952233	82	10.6	82	91	5	1395	22	17	21	38	1.93
17951365--17952233	42	21.2	39	87	10	1145	22	17	21	38	1.93
17951365--17952233	330	2.6	330	93	4	1463	22	17	21	38	1.93
17952241--17952347	13	7.6	13	83	14	92	85	6	0	7	0.72
17952241--17952347	36	3.1	34	80	9	119	85	6	0	7	0.72
17952241--17952334	1	94.0	1	78	0	80	87	6	0	6	0.68
17952240--17952348	12	9.0	12	79	18	88	84	7	0	8	0.78
17952448--17952512	20	3.2	20	88	0	94	15	32	30	21	1.94
17952676--17952704	3	9.7	3	100	0	58	31	0	0	68	0.89
17953325--17953371	19	2.5	19	85	0	67	27	29	19	23	1.98
17955908--17955937	15	2.1	14	93	6	51	50	6	36	6	1.55
17956134--17956363	41	5.6	40	88	7	322	21	16	21	39	1.92
17956134--17956363	82	2.8	82	91	7	362	21	16	21	39	1.92
17956372--17956481	1	110.0	1	77	0	94	87	6	2	3	0.74
17956450--17956665	110	2.0	111	89	2	337	42	12	15	30	1.83
17957131--17957169	15	2.6	15	79	0	51	38	10	38	12	1.78
17958577--17958837	41	6.3	41	88	5	366	22	17	25	34	1.95
17958577--17958837	83	3.2	83	91	2	393	22	17	25	34	1.95
17958846--17958957	9	12.6	9	81	12	106	84	8	0	6	0.76
17958845--17958950	1	106.0	1	75	0	77	85	8	0	5	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17959137--17959178	15	2.9	14	86	10	50	28	2	2	66	1.16
17959151--17959180	3	10.0	3	100	0	60	33	0	0	66	0.92
17959774--17959832	31	1.9	31	96	0	109	22	30	23	23	1.99
17959846--17959885	21	1.9	21	90	10	64	47	25	22	5	1.71
17960241--17960283	5	8.2	5	85	10	59	18	39	39	2	1.64
17960317--17960949	159	4.0	158	91	4	981	29	14	17	39	1.89
17962002--17962042	19	2.3	18	84	16	50	68	0	2	29	1.03
17972883--17973025	74	1.9	73	84	4	189	48	14	8	28	1.73
17980643--17980672	11	2.8	11	95	5	53	83	0	10	6	0.81
17980715--17980778	2	32.0	2	100	0	128	50	0	50	0	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109