genome.fa.s35.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  45  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7693408--7693505	37	2.8	34	83	6	108	16	4	0	79	0.88
7693414--7693504	20	4.5	19	77	20	87	17	3	0	79	0.87
7693586--7693653	22	3.2	21	84	12	77	30	4	2	61	1.30
7694510--7694554	23	1.9	23	81	4	54	8	6	0	84	0.78
7694601--7694697	6	16.5	6	71	16	69	14	5	2	78	1.01
7694601--7694697	17	5.6	16	77	15	86	14	5	2	78	1.01
7694601--7694697	5	18.8	5	73	22	69	14	5	2	78	1.01
7694601--7694655	11	5.1	10	78	10	56	12	5	1	80	0.97
7694600--7694697	34	2.8	36	83	10	123	14	6	2	77	1.05
7694715--7695047	57	5.7	58	84	8	374	45	7	12	33	1.70
7697536--7697565	14	2.1	14	100	0	60	26	20	13	40	1.89
7698559--7698721	80	2.0	80	90	2	256	34	2	9	53	1.47
7700396--7700448	19	2.8	19	77	8	54	45	0	1	52	1.11
7700502--7700567	21	2.8	23	80	13	73	48	1	0	50	1.10
7711564--7711610	22	2.1	22	88	0	67	27	2	4	65	1.22
7711671--7711701	16	2.0	16	93	6	55	58	0	3	38	1.15
7712317--7712394	29	2.6	31	90	6	126	48	0	5	46	1.24
7712376--7712439	30	2.2	29	85	2	83	42	0	0	57	0.98
7714262--7714287	2	13.0	2	100	0	52	50	0	0	50	1.00
7715356--7715386	1	31.0	1	93	0	53	0	3	0	96	0.21
7715756--7715798	2	21.5	2	100	0	86	0	48	0	51	1.00
7729656--7729697	16	2.5	17	76	3	50	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7729770--7729824	22	2.4	24	82	11	71	43	0	0	56	0.99
7729843--7729881	19	2.2	18	90	9	62	64	0	0	35	0.94
7733660--7733698	18	2.2	18	100	0	78	43	10	0	46	1.37
7743713--7743739	1	27.0	1	100	0	54	100	0	0	0	0.00
7743880--7743944	14	4.6	14	73	21	55	55	3	0	41	1.15
7744575--7744633	23	2.6	23	88	0	82	54	0	1	44	1.10
7745241--7745357	36	3.2	37	78	14	107	47	4	0	48	1.21
7745383--7745426	22	2.0	22	82	8	54	40	0	0	59	0.98
7745395--7745443	15	3.5	15	73	15	52	42	0	0	57	0.99
7745799--7745824	7	3.7	7	100	0	52	26	30	15	26	1.96
7745982--7746050	22	3.0	23	74	8	68	57	4	0	37	1.18
7746524--7746583	15	4.1	15	82	8	88	58	0	1	40	1.08
7746514--7746596	28	3.0	28	84	7	98	60	1	2	36	1.18
7746640--7746702	28	2.2	28	78	18	69	46	1	1	50	1.20
7751151--7751187	2	18.5	2	88	0	56	45	2	0	51	1.15
7757549--7757575	2	13.5	2	100	0	54	51	0	48	0	1.00
7758713--7758758	18	2.5	19	79	10	51	34	6	8	50	1.59
7763321--7763353	14	2.3	15	89	5	50	27	0	0	72	0.85
7768438--7768500	29	2.2	28	80	5	74	49	0	6	44	1.28
7769398--7769422	10	2.5	10	100	0	50	56	0	0	44	0.99
7772164--7772195	16	1.9	17	93	6	57	37	15	6	40	1.73
7773266--7773327	26	2.4	26	83	0	79	29	8	4	58	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7777797--7777830	13	2.5	14	90	4	52	44	0	0	55	0.99
7777810--7777869	18	3.3	18	83	4	75	43	0	1	55	1.10
7777912--7777961	19	2.6	18	84	15	64	54	0	0	46	1.00
7777913--7777958	20	2.2	21	88	11	69	54	0	0	45	0.99
7784535--7784656	28	4.3	28	67	9	68	27	13	9	50	1.70
7786471--7786500	15	2.0	15	93	0	51	43	0	6	50	1.28
7787213--7787237	5	5.0	5	100	0	50	20	0	0	80	0.72
7788502--7788551	17	2.9	17	75	3	55	52	0	2	46	1.12
7790007--7790047	13	3.2	13	92	0	64	31	14	7	46	1.72
7790007--7790056	13	3.9	13	89	2	57	30	16	6	48	1.70
7790785--7790842	20	2.8	20	77	15	55	53	8	3	34	1.49
7790852--7790903	22	2.4	22	86	0	68	46	0	13	40	1.43
7791041--7791391	22	16.3	22	70	12	145	49	5	9	36	1.58
7791021--7791112	44	2.1	44	84	6	116	50	6	11	31	1.65
7791256--7791375	43	2.8	42	81	6	114	48	6	6	38	1.56
7791362--7791492	44	3.0	42	73	8	118	54	3	7	35	1.45
7791576--7791650	22	3.4	22	79	3	71	42	2	9	45	1.50
7791944--7791987	22	1.9	22	90	9	70	52	4	9	34	1.54
7792066--7792121	11	5.1	11	78	8	60	51	5	7	35	1.52
7792009--7792126	22	5.4	22	72	8	89	53	5	8	32	1.55
7792140--7792177	20	2.0	20	89	5	60	50	0	7	42	1.31
7792175--7792286	46	2.5	45	80	15	142	49	7	6	37	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7792136--7792604	44	10.6	43	70	12	148	47	5	7	38	1.55
7792133--7792604	22	21.4	21	66	14	105	48	5	7	38	1.55
7792429--7792604	66	2.7	66	76	1	183	48	3	7	39	1.51
7792431--7792623	88	2.2	88	81	1	217	46	4	7	41	1.50
7792929--7793002	21	3.5	20	80	7	76	44	9	5	40	1.60
7793462--7793488	3	9.0	3	100	0	54	33	33	0	33	1.58
7806095--7806130	18	2.0	18	100	0	72	33	33	16	16	1.92
7815064--7815089	7	3.7	7	100	0	52	38	30	15	15	1.88
7817445--7817479	14	2.6	13	86	8	52	42	0	0	57	0.99
7822856--7822913	25	2.6	22	74	15	57	44	3	5	46	1.42
7823032--7823076	3	15.0	3	90	9	74	66	0	2	31	1.04
7824163--7824268	55	1.9	55	84	0	140	48	13	16	21	1.81
7825055--7825114	18	3.4	18	71	15	54	33	10	15	41	1.80
7826557--7826585	10	3.0	10	95	5	51	10	10	0	79	0.94
7826540--7826592	22	2.5	21	78	3	61	15	13	0	71	1.14
7826556--7826581	9	2.9	9	100	0	52	11	7	0	80	0.89
7827799--7827852	26	2.1	26	92	0	90	27	14	18	38	1.90
7829621--7829685	26	2.6	25	75	22	64	46	0	1	52	1.10
7831077--7831142	24	2.6	26	79	11	75	50	0	0	50	1.00
7831077--7831142	13	5.2	13	75	12	66	50	0	0	50	1.00
7831077--7831142	25	2.7	24	83	11	80	50	0	0	50	1.00
7839467--7839492	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7849341--7849374	16	2.1	17	88	5	52	35	17	17	29	1.93
7851219--7851303	31	2.7	31	87	5	118	41	3	1	54	1.25
7855206--7855340	66	2.0	66	90	2	209	42	12	19	25	1.86
7862350--7862378	3	9.7	3	100	0	58	31	0	0	68	0.89
7867760--7867803	6	7.3	6	85	10	54	61	0	0	38	0.96
7867745--7867803	18	3.3	18	74	6	50	59	0	0	40	0.97
7867759--7867805	18	2.6	18	86	6	60	59	0	0	40	0.97
7867759--7867825	18	4.0	18	70	20	56	62	0	0	37	0.95
7873424--7873476	22	2.5	21	82	14	65	52	0	0	47	1.00
7873426--7873476	20	2.4	22	81	12	63	52	0	0	47	1.00
7879470--7879526	29	2.0	29	85	0	78	43	1	5	49	1.35
7879982--7880012	15	2.1	15	93	0	53	41	6	22	29	1.78
7880630--7880654	2	12.5	2	100	0	50	52	0	0	48	1.00
7891347--7891414	13	5.7	12	75	11	59	60	0	2	36	1.12
7891731--7891788	17	2.9	21	73	21	61	46	1	0	51	1.11
7901445--7901483	20	2.0	20	100	0	78	38	20	5	35	1.75
7901448--7901490	20	2.2	20	91	4	70	39	20	2	37	1.66
7908738--7909051	156	2.0	156	100	0	628	40	19	10	30	1.84
7912016--7912044	11	2.6	11	100	0	58	10	31	48	10	1.71
7913150--7913398	129	1.9	132	84	2	333	22	22	23	31	1.99
7918946--7918998	3	17.7	3	96	0	97	35	32	32	0	1.58
7922517--7922551	6	5.5	6	87	12	52	31	2	0	65	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7922517--7922563	14	3.5	14	83	16	64	31	4	0	63	1.13
7922507--7922572	26	2.5	26	78	7	80	40	3	0	56	1.15
7931003--7931029	2	13.5	2	100	0	54	0	0	48	51	1.00
7931989--7932344	182	2.0	180	86	5	495	32	13	21	32	1.92
7933191--7933267	34	2.2	34	84	13	104	24	19	1	54	1.52
7937106--7937213	57	1.9	57	82	3	137	35	25	1	37	1.67
7939530--7939635	53	2.0	53	98	0	203	41	8	11	38	1.71
7942832--7942879	14	3.2	14	80	13	51	75	2	0	22	0.91
7942833--7942883	25	2.1	23	89	7	75	74	1	0	23	0.92
7942833--7942893	23	2.5	24	86	5	79	72	3	1	22	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109