genome.fa.s35.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  47  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8273846--8273935	24	3.6	24	72	10	74	46	3	0	50	1.18
8273826--8273908	22	3.8	20	72	20	60	43	2	1	53	1.21
8273849--8273943	47	2.0	46	82	6	111	45	3	0	51	1.17
8275316--8275349	16	2.1	16	89	10	52	70	0	0	29	0.87
8275331--8275397	21	3.1	22	69	18	59	61	0	0	38	0.96
8279370--8279417	18	2.6	18	80	3	60	41	0	0	58	0.98
8279371--8279417	25	1.9	24	91	4	76	42	0	0	57	0.98
8279503--8279532	6	5.0	6	95	0	51	33	3	0	63	1.11
8281097--8281164	20	3.5	20	65	15	52	35	0	2	61	1.11
8281087--8281161	39	1.9	39	89	7	118	38	0	2	58	1.12
8287330--8287393	19	3.4	18	76	6	65	42	1	0	56	1.09
8287340--8287396	12	4.6	13	69	18	50	40	0	0	59	0.97
8291667--8291702	18	2.0	18	94	0	63	52	5	19	22	1.66
8308009--8308052	22	2.0	23	90	4	72	54	2	0	43	1.12
8308498--8308551	25	2.1	27	89	6	85	62	3	1	31	1.23
8342060--8342223	83	2.0	83	96	0	301	30	17	14	37	1.90
8346639--8346737	51	1.9	51	83	4	128	26	6	7	60	1.46
8350765--8350826	32	1.9	32	93	0	106	14	25	12	46	1.80
8357629--8357685	19	2.8	22	73	24	61	56	0	0	43	0.99
8358773--8358818	24	1.9	24	82	8	58	30	13	34	21	1.91
8372109--8372139	10	3.1	10	95	0	53	45	0	6	48	1.28
8392045--8392086	3	14.0	3	100	0	84	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8398924--8398973	22	2.3	21	83	12	66	62	2	0	36	1.07
8408357--8408398	21	1.9	23	85	9	61	57	4	0	38	1.20
8411301--8411330	15	2.0	15	100	0	60	33	33	6	26	1.83
8425056--8425114	26	2.2	28	87	6	86	42	1	0	55	1.09
8429004--8429109	23	4.5	23	75	9	88	40	3	1	53	1.30
8431100--8431139	21	1.9	21	84	0	53	55	5	0	40	1.22
8433405--8433455	17	2.9	17	80	11	59	47	0	1	50	1.12
8433380--8433478	42	2.4	40	78	11	101	47	0	2	50	1.12
8435274--8435311	13	2.8	14	80	8	51	39	0	2	57	1.12
8435289--8435346	19	3.1	19	80	9	73	37	1	3	56	1.26
8435432--8435498	16	4.0	16	81	9	71	71	1	0	26	0.94
8435434--8435505	10	6.7	11	71	25	57	72	1	0	26	0.93
8439709--8439778	22	3.3	22	75	13	74	11	0	10	78	0.96
8439783--8439821	12	3.4	12	89	10	64	25	0	7	66	1.18
8440239--8440274	18	2.1	17	89	5	54	77	2	0	19	0.88
8444348--8444414	20	3.3	20	68	17	57	73	5	4	16	1.20
8445193--8445271	13	6.1	13	74	11	63	51	7	2	37	1.44
8452280--8452345	34	1.9	34	87	0	96	30	15	15	39	1.88
8452442--8452602	41	3.9	40	78	13	182	29	15	13	40	1.86
8452856--8452896	16	2.5	16	88	4	55	78	0	2	19	0.87
8453804--8453865	26	2.5	24	82	10	79	9	1	12	75	1.11
8453828--8453871	20	2.1	21	91	4	72	11	0	11	77	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8453879--8453922	3	15.0	3	85	4	63	27	0	4	68	1.09
8453879--8453929	12	4.4	12	87	7	61	27	0	5	66	1.14
8455846--8455890	23	2.0	23	81	0	54	75	0	17	6	1.01
8458710--8458759	23	2.2	23	88	0	82	40	4	2	54	1.31
8472862--8472914	22	2.4	22	84	6	63	30	0	3	66	1.10
8491597--8491646	25	2.0	25	96	0	91	28	22	20	30	1.98
8496674--8496716	17	2.6	16	85	7	59	67	0	0	32	0.91
8503474--8503507	3	11.3	3	87	0	50	0	70	2	26	1.01
8507720--8507753	2	17.0	2	100	0	68	50	0	0	50	1.00
8521818--8521862	22	2.1	21	87	4	63	51	2	0	46	1.13
8521841--8521873	17	1.9	17	88	11	50	39	0	3	57	1.14
8522845--8522974	29	4.4	30	75	12	99	35	3	4	56	1.38
8523015--8523101	28	3.1	28	73	5	77	59	3	3	33	1.31
8532688--8532744	21	2.7	21	81	8	71	45	0	0	54	0.99
8536152--8536228	39	2.0	39	84	5	102	46	1	0	51	1.09
8550513--8550553	21	2.0	20	90	4	64	60	0	0	39	0.96
8555837--8555866	10	3.0	10	95	0	51	43	0	0	56	0.99
8559134--8559196	31	2.0	31	96	0	117	26	15	15	41	1.88
8572790--8572984	100	2.0	95	89	8	297	50	10	10	27	1.70
8580008--8580074	21	3.0	22	77	14	59	47	1	0	50	1.10
8582345--8582373	9	3.3	9	95	4	51	82	0	0	17	0.66
8588944--8589012	30	2.3	30	75	7	79	49	4	8	37	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8589390--8589422	10	3.4	10	91	4	50	24	15	0	60	1.35
8589710--8589734	2	12.5	2	100	0	50	48	0	0	52	1.00
8591555--8591588	15	2.3	15	89	0	50	55	0	11	32	1.36
8591774--8591813	16	2.3	18	83	12	57	45	0	2	52	1.14
8592024--8592073	21	2.4	21	79	0	55	36	6	2	56	1.36
8592453--8592882	234	1.8	234	85	7	613	30	5	7	56	1.50
8592848--8592899	20	2.5	20	84	9	61	23	7	0	69	1.14
8592843--8592910	21	3.3	21	78	14	61	27	5	1	64	1.25
8600512--8600633	63	1.9	64	91	1	201	23	9	50	16	1.73
8601542--8601584	21	2.0	21	91	8	70	46	6	2	44	1.43
8612002--8612052	27	2.0	25	82	14	61	56	9	21	11	1.63
8615595--8615642	25	1.9	25	86	0	69	60	4	4	31	1.35
8618582--8618612	2	15.5	2	100	0	62	51	0	0	48	1.00
8624694--8624720	3	9.0	3	100	0	54	66	0	0	33	0.92
8635255--8635297	21	2.0	21	100	0	86	18	18	18	44	1.87
8635554--8635578	2	12.5	2	100	0	50	48	0	0	52	1.00
8637375--8637419	3	15.0	3	90	9	74	66	0	31	2	1.04
8649071--8649100	14	2.1	14	100	0	60	23	6	50	20	1.71
8649084--8649170	43	2.0	43	97	0	165	24	27	21	26	1.99
8649107--8649361	127	2.0	127	96	0	474	22	30	18	29	1.97
8653766--8653805	19	2.1	19	86	13	55	40	0	0	60	0.97
8654192--8654247	29	1.9	29	85	7	78	32	1	1	64	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8664179--8664223	24	1.9	23	82	13	56	51	2	6	40	1.41
8664546--8664570	13	1.9	13	100	0	50	48	8	0	44	1.32
8664581--8664645	30	2.1	31	82	5	78	49	4	0	46	1.22
8673442--8673511	35	2.2	32	78	19	74	54	7	0	38	1.28
8677417--8677454	17	2.2	17	90	0	58	31	0	0	68	0.90
8677829--8677864	12	3.3	11	88	11	56	33	0	0	66	0.92
8677829--8677881	20	2.5	20	84	6	61	43	0	0	56	0.99
8677909--8677943	18	1.9	18	88	11	54	65	0	0	34	0.93
8680736--8680776	20	2.0	20	90	0	64	34	7	17	41	1.77
8682533--8682593	27	2.3	26	75	13	61	47	1	1	49	1.21
8690934--8691021	43	2.0	44	93	2	151	42	18	13	26	1.87
8692856--8692907	27	1.9	27	92	0	86	23	15	13	48	1.80
8695288--8695336	25	2.0	25	95	0	89	30	16	24	28	1.96
8711812--8711865	12	4.4	13	70	13	51	33	0	0	66	0.92
8714626--8714668	2	21.5	2	100	0	86	51	48	0	0	1.00
8723684--8723752	33	2.1	33	86	5	95	27	34	10	27	1.89
8728260--8728329	34	2.1	34	94	0	122	58	12	17	11	1.63
8734072--8734097	9	2.9	9	100	0	52	53	0	0	46	1.00
8734102--8734165	15	4.2	16	71	17	64	51	0	0	48	1.00
8734103--8734149	12	3.5	13	80	11	51	51	0	0	48	1.00
8742628--8742663	17	2.1	17	90	10	56	16	11	11	61	1.57
8747340--8747380	17	2.4	17	88	8	57	63	2	0	34	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8747666--8747706	17	2.5	17	88	11	59	60	2	0	36	1.10
8751588--8751612	2	12.5	2	100	0	50	52	0	0	48	1.00
8758205--8758233	14	2.1	14	93	6	51	58	0	0	41	0.98
8764559--8764627	30	2.3	30	80	12	70	40	0	2	56	1.14
8764598--8764665	26	2.7	24	76	13	64	35	2	0	61	1.11
8765865--8765908	19	2.3	19	88	7	63	65	0	2	31	1.05
8765858--8765922	16	3.7	17	76	15	69	63	0	3	33	1.10
8771925--8771975	20	2.5	20	80	3	57	43	1	3	50	1.31
8772111--8772167	24	2.4	24	79	5	62	54	7	3	35	1.45
8772220--8772313	6	15.7	6	75	15	70	56	1	0	42	1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109