genome.fa.s35.2.7.7.80.10.50.1000.59.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  59  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11709246--11709271	12	2.2	12	100	0	52	23	34	0	42	1.54
11709543--11709612	29	2.4	30	82	2	97	57	0	0	42	0.99
11709965--11710026	29	2.1	30	90	3	99	25	16	17	40	1.90
11710801--11711017	104	2.1	104	94	0	382	39	18	5	35	1.74
11718228--11718253	13	2.0	13	100	0	52	46	0	7	46	1.31
11719168--11719195	2	14.0	2	100	0	56	50	0	0	50	1.00
11724334--11724470	55	2.5	55	78	1	150	27	10	13	48	1.76
11726133--11726335	101	2.0	101	93	1	345	32	14	13	39	1.85
11732166--11732336	63	2.7	62	80	11	204	31	14	16	38	1.88
11732166--11732513	62	5.7	62	71	13	209	33	14	14	38	1.86
11732414--11732703	62	4.6	62	68	15	159	35	16	10	37	1.83
11732496--11732761	125	2.1	125	79	12	278	37	17	11	33	1.86
11732435--11732705	63	4.3	63	68	18	163	36	16	10	36	1.84
11736206--11736251	23	1.9	25	82	8	60	39	10	8	41	1.71
11736913--11736951	21	1.9	19	85	10	51	64	0	10	25	1.25
11740088--11740204	62	1.9	62	81	10	141	43	15	10	30	1.80
11740178--11740319	62	2.3	62	80	11	166	31	14	11	42	1.81
11746835--11746884	20	2.5	20	87	3	66	44	0	2	54	1.11
11746997--11747057	21	2.9	21	75	4	52	57	3	6	32	1.41
11747794--11747836	16	2.6	16	81	3	50	34	2	2	60	1.22
11747782--11748101	140	2.3	130	82	8	308	44	5	5	44	1.52
11748431--11748466	2	18.0	2	94	0	63	50	2	0	47	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11748671--11748715	18	2.5	18	82	17	58	64	0	2	33	1.06
11749735--11749762	2	14.0	2	100	0	56	50	0	0	50	1.00
11750577--11750611	2	18.0	2	94	5	63	48	0	0	51	1.00
11756388--11756520	18	7.6	18	73	15	118	57	0	0	42	1.04
11756541--11756612	19	3.9	18	72	13	58	44	1	0	54	1.08
11756538--11756613	18	4.1	19	68	13	59	43	1	0	55	1.08
11756607--11756670	26	2.5	26	85	5	78	46	3	1	48	1.27
11758458--11758494	16	2.2	18	90	9	60	56	0	0	43	0.99
11758598--11758624	5	5.4	5	100	0	54	22	0	0	77	0.76
11758866--11758979	57	2.0	57	94	0	201	33	15	19	31	1.93
11763162--11763248	42	2.0	42	82	6	104	41	11	8	39	1.71
11762825--11763272	203	2.2	199	78	7	458	43	9	8	37	1.69
11763120--11763485	185	1.9	189	86	7	519	46	7	8	36	1.64
11766470--11766526	3	19.0	3	100	0	114	33	0	0	66	0.92
11766965--11766995	7	4.3	7	95	4	53	38	3	0	58	1.15
11766994--11767036	22	2.0	21	81	4	50	30	9	6	53	1.59
11773738--11773799	28	2.2	28	85	0	79	56	9	6	27	1.56
11774243--11774280	17	2.3	17	86	13	53	78	0	10	10	0.95
11774350--11774395	3	15.3	3	100	0	92	67	0	0	32	0.91
11778857--11778900	23	1.9	23	81	9	54	40	22	4	31	1.74
11779875--11779918	2	22.0	2	90	0	70	50	4	0	45	1.22
11784470--11784518	22	2.3	22	92	3	82	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11785477--11785534	13	4.4	13	77	14	57	55	0	0	44	0.99
11789805--11789837	16	2.1	16	94	0	57	30	9	6	54	1.56
11798847--11798882	3	12.0	3	100	0	72	33	0	0	66	0.92
11800209--11800255	14	3.5	13	83	16	60	4	12	0	82	0.80
11800291--11800370	22	3.8	20	77	12	81	77	1	3	17	0.98
11800288--11800337	17	2.9	17	73	26	52	72	2	4	22	1.12
11800326--11800373	5	9.8	5	81	18	57	83	0	2	14	0.74
11800291--11800376	12	8.0	11	74	19	67	77	1	3	17	0.96
11800292--11800376	41	2.0	44	84	6	113	77	1	3	17	0.97
11800324--11800376	23	2.3	23	90	6	81	83	0	1	15	0.74
11801186--11801328	3	48.0	3	83	9	132	69	2	4	24	1.17
11801390--11801475	26	3.3	26	75	0	82	26	22	26	24	2.00
11804257--11804525	55	4.9	54	75	5	200	23	21	14	40	1.90
11804257--11804568	110	2.8	111	74	3	290	23	21	14	40	1.90
11804288--11804584	165	1.8	165	83	2	400	24	21	14	39	1.91
11804843--11804952	3	38.3	3	71	12	70	30	2	6	60	1.35
11804837--11804895	21	2.9	21	87	2	75	25	1	6	66	1.26
11805151--11805210	20	3.0	20	97	0	111	15	16	28	40	1.89
11805816--11805859	18	2.3	20	80	11	56	25	0	0	75	0.81
11806718--11806771	8	7.0	8	75	12	51	53	24	0	22	1.46
11806718--11806773	15	3.7	15	79	9	60	53	23	0	23	1.46
11806706--11806771	23	2.8	23	84	6	80	54	22	0	22	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11808343--11808383	20	2.0	20	100	0	82	48	19	4	26	1.69
11810349--11810378	2	15.0	2	92	0	51	46	3	0	50	1.18
11811361--11811398	20	1.9	20	84	10	51	31	7	15	44	1.75
11814279--11814307	7	4.1	7	100	0	58	17	0	0	82	0.66
11815169--11815201	15	2.3	15	89	5	50	15	0	6	78	0.93
11816783--11816833	12	4.5	11	81	18	52	80	0	17	1	0.81
11816782--11816835	11	4.5	11	74	17	54	81	0	16	1	0.78
11816978--11817125	44	3.4	44	75	7	131	39	14	14	31	1.87
11817087--11817666	50	11.9	50	74	12	367	39	18	11	30	1.86
11817098--11817660	98	5.8	95	75	10	446	39	18	11	30	1.86
11817199--11817660	148	3.1	145	82	5	529	39	18	12	30	1.87
11818427--11818469	10	4.3	10	84	0	59	11	9	2	76	1.10
11831080--11831127	14	3.1	15	82	14	53	77	2	0	20	0.88
11831078--11831127	16	3.1	16	79	2	55	78	2	0	20	0.86
11834981--11835031	21	2.4	21	80	9	59	25	3	9	60	1.45
11843819--11843961	71	2.1	69	88	5	209	39	4	9	46	1.56
11847878--11847921	18	2.4	18	85	10	63	72	2	6	18	1.17
11856653--11856744	40	2.3	41	84	1	114	47	7	3	41	1.48
11856890--11857012	63	2.0	62	85	3	167	39	6	3	51	1.44
11863086--11864675	354	4.5	353	82	5	1824	37	12	14	35	1.84
11879198--11879227	2	15.0	2	92	0	51	50	0	3	46	1.18
11879830--11879856	2	13.5	2	100	0	54	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11880501--11880542	21	2.0	21	100	0	84	52	19	19	9	1.72
11885279--11885325	23	2.0	23	87	0	67	53	0	10	36	1.36
11886978--11887024	24	2.0	24	100	0	94	42	6	8	42	1.60
11898444--11898487	20	2.2	20	87	0	61	38	9	11	40	1.73
11899905--11899964	9	6.6	9	76	3	57	38	1	1	58	1.18
11899951--11900069	37	3.2	37	96	0	211	47	4	2	45	1.35
11903360--11903491	30	4.5	30	73	9	103	48	28	3	20	1.64
11903360--11903548	57	3.2	59	80	6	156	48	29	2	19	1.60
11903347--11903444	14	6.8	14	68	5	61	51	25	4	19	1.65
11903478--11903548	27	2.5	30	81	9	85	49	33	0	16	1.47
11905435--11905475	21	2.0	21	95	0	73	41	12	2	43	1.55
11907295--11907369	35	2.1	36	97	2	143	26	10	8	54	1.62
11920407--11920445	19	2.0	20	85	5	53	15	7	0	76	0.99
11923310--11923373	6	10.2	6	84	15	85	18	1	0	79	0.81
11923313--11923396	21	3.6	23	77	19	86	22	1	1	75	0.95
11923313--11923414	39	2.6	39	83	10	113	20	2	0	75	0.99
11923488--11923547	22	2.8	21	85	10	68	21	5	5	68	1.29
11923982--11924025	19	2.3	19	92	0	70	50	25	13	11	1.75
11924372--11924420	15	3.4	14	81	10	55	14	4	0	81	0.83
11924385--11924420	9	3.9	9	96	3	63	13	0	0	86	0.58
11924363--11924420	24	2.3	24	82	5	71	17	3	0	79	0.87
11924393--11924438	16	2.9	15	84	9	56	15	6	2	76	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11924377--11924427	24	2.1	24	82	7	59	13	5	0	80	0.89
11924464--11924863	59	6.7	59	85	8	492	44	6	13	35	1.71
11928480--11928888	204	2.0	204	98	0	782	31	17	14	35	1.91
11928980--11929010	16	1.9	16	93	0	53	70	0	19	9	1.14
11930235--11930511	41	6.8	41	89	1	414	24	16	22	36	1.94
11930485--11930536	25	2.1	25	100	0	104	26	17	17	38	1.92
11930444--11930578	66	2.0	67	91	4	220	24	17	21	36	1.95
11930510--11930895	41	9.3	41	88	2	576	24	17	21	36	1.95
11930362--11930653	149	2.0	148	92	3	489	24	17	20	36	1.94
11930510--11930895	83	4.7	82	90	3	569	24	17	21	36	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109