genome.fa.s35.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  36  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5383980--5384378	35	11.4	35	72	13	227	21	17	10	50	1.76
5385513--5395549	35	285.1	35	69	11	1457	18	17	13	50	1.77
5385513--5410387	105	235.9	105	67	13	2594	18	17	13	50	1.77
5385858--5386103	71	3.5	70	76	6	235	18	13	15	52	1.75
5385501--5397471	70	170.6	69	67	14	989	18	17	13	50	1.77
5386387--5386831	212	2.1	212	81	5	508	17	15	14	51	1.76
5386897--5387080	71	2.6	70	82	5	192	19	13	16	50	1.77
5385691--5387864	106	20.6	105	68	13	377	18	15	14	51	1.77
5387275--5387655	176	2.2	176	78	3	383	19	16	13	50	1.78
5387344--5387877	212	2.5	210	76	5	506	18	16	13	51	1.76
5385720--5390164	987	4.5	987	81	6	4772	18	16	13	51	1.77
5388331--5388853	212	2.5	213	77	6	519	17	17	14	51	1.77
5389865--5390163	142	2.1	141	81	1	330	19	12	15	53	1.72
5390207--5390656	141	3.2	140	77	5	415	18	16	13	52	1.75
5389996--5390390	211	1.9	210	80	5	465	17	16	12	53	1.73
5390206--5390620	176	2.4	176	78	6	428	18	16	12	52	1.75
5391847--5392021	69	2.5	68	80	9	158	20	17	13	49	1.79
5393040--5393526	106	4.6	106	71	9	282	17	16	14	51	1.77
5393343--5393650	142	2.2	141	77	4	318	17	19	14	49	1.80
5393685--5395808	35	61.2	34	68	15	226	18	17	13	51	1.77
5395002--5395361	106	3.4	103	74	8	289	17	14	15	52	1.74
5394979--5395256	141	2.0	141	81	8	325	19	14	13	52	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5394985--5395416	176	2.5	176	83	3	523	17	15	14	51	1.76
5395318--5395509	107	1.8	106	80	5	235	17	21	15	46	1.84
5395935--5396020	35	2.5	35	79	11	95	16	19	13	50	1.79
5396034--5396436	35	11.6	34	72	13	121	20	15	12	51	1.75
5396605--5397802	35	34.6	35	68	13	349	17	17	13	51	1.77
5396925--5397197	138	2.0	139	82	5	336	19	14	12	53	1.73
5397098--5397342	135	1.8	134	84	4	341	17	14	14	53	1.72
5397879--5398111	69	3.3	70	77	11	210	18	18	12	51	1.77
5397879--5398942	35	30.5	35	70	10	291	17	16	14	51	1.77
5397919--5398237	141	2.3	140	81	8	355	18	17	13	50	1.77
5399011--5399111	35	2.8	37	81	12	115	15	20	12	50	1.77
5399280--5399362	36	2.3	35	79	4	94	15	20	13	50	1.77
5399622--5402137	35	71.6	35	71	7	793	18	16	13	51	1.77
5399618--5406827	70	102.5	70	68	10	1026	18	17	13	50	1.78
5400000--5400454	211	2.2	212	81	5	528	16	15	15	52	1.75
5400003--5400523	211	2.5	212	79	7	472	17	15	15	52	1.75
5400271--5400666	142	2.8	142	76	7	385	19	17	13	49	1.80
5400355--5400514	71	2.3	70	79	5	178	15	18	14	51	1.77
5400824--5400965	71	2.0	72	84	1	187	21	15	12	50	1.77
5400881--5401123	104	2.3	106	79	7	262	18	17	13	50	1.78
5401278--5401969	106	6.5	103	71	13	286	17	17	14	50	1.78
5399969--5410397	141	73.5	141	66	14	740	18	17	13	50	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5401305--5401815	211	2.4	210	79	7	527	16	16	15	52	1.75
5402204--5411972	35	280.0	34	67	13	917	18	17	13	50	1.77
5403213--5403747	106	5.1	103	73	9	321	16	16	15	51	1.78
5403248--5403747	211	2.4	209	80	6	526	16	16	16	51	1.77
5404114--5404149	17	2.1	18	89	5	56	13	13	11	61	1.58
5404667--5404826	71	2.2	72	81	6	184	23	15	11	50	1.76
5404711--5404844	72	1.9	71	81	6	164	23	14	11	51	1.73
5405363--5405418	29	1.9	29	85	0	76	17	17	10	53	1.72
5405576--5405717	72	2.0	72	84	4	189	21	15	13	50	1.78
5405482--5405822	106	3.2	105	74	14	256	18	14	14	52	1.74
5405674--5405772	34	2.9	34	82	10	112	20	15	10	54	1.69
5406043--5406721	106	6.4	104	72	9	356	17	17	14	50	1.79
5406078--5406577	211	2.4	208	80	7	542	16	15	15	51	1.76
5406945--5406980	17	2.1	18	89	5	56	13	13	11	61	1.58
5408322--5408412	36	2.6	34	79	10	94	17	18	13	50	1.78
5408510--5408637	36	3.6	35	81	4	150	16	21	14	47	1.82
5409191--5409371	69	2.6	69	75	12	181	20	16	10	52	1.73
5409411--5409556	72	2.0	72	84	3	188	21	15	12	51	1.75
5409483--5409765	104	2.7	102	77	8	259	18	15	13	52	1.74
5410182--5410397	71	3.1	68	78	7	207	20	20	10	48	1.78
5410780--5410911	71	1.9	70	83	1	174	18	21	11	48	1.79
5411240--5411471	71	3.3	70	78	6	193	20	12	14	53	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5430064--5430110	12	4.0	12	76	13	53	57	0	0	42	0.98
5430055--5430108	28	1.9	28	92	0	90	55	1	0	42	1.10
5430055--5430099	16	3.1	16	75	21	53	51	2	0	46	1.13
5430143--5430168	10	2.6	10	100	0	52	38	0	0	61	0.96
5431813--5431855	22	2.0	22	90	0	68	32	0	16	51	1.45
5444791--5444848	24	2.4	25	80	11	66	75	0	17	6	1.01
5445659--5445712	22	2.5	22	96	0	99	40	16	16	25	1.89
5449818--5449876	31	1.9	31	89	0	91	28	8	22	40	1.83
5472554--5472599	23	2.0	23	83	8	58	15	0	8	76	1.02
5472554--5472603	25	2.1	23	85	7	64	16	0	8	76	1.02
5472812--5472846	13	2.8	12	87	8	52	80	0	0	20	0.72
5472788--5472847	32	1.9	30	83	6	75	76	3	1	18	1.00
5477578--5477608	2	15.5	2	100	0	62	51	0	0	48	1.00
5485042--5485086	20	2.3	21	79	20	53	46	4	2	46	1.35
5489932--5489996	20	3.5	19	76	12	64	46	0	0	53	1.00
5490016--5490060	20	2.2	21	88	7	67	66	0	0	33	0.92
5490360--5490388	4	7.2	4	100	0	58	24	0	0	75	0.80
5492116--5492184	7	9.1	7	71	20	50	15	1	4	78	0.98
5492151--5492188	19	1.9	20	89	10	60	15	0	7	76	1.01
5492445--5492489	23	2.0	23	81	0	54	64	0	0	35	0.94
5492494--5492527	14	2.3	15	90	5	52	35	2	5	55	1.39
5492635--5492711	30	2.6	30	88	10	106	53	33	0	12	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5492636--5492727	30	3.2	29	85	11	102	51	33	0	15	1.44
5492636--5492734	29	3.4	29	83	12	89	50	35	0	14	1.43
5494887--5494960	29	2.6	29	95	0	130	36	27	13	22	1.92
5501413--5501460	21	2.3	21	82	10	62	31	22	10	35	1.88
5501409--5501847	132	3.3	132	79	5	453	23	19	15	40	1.91
5501788--5501861	22	3.4	21	77	7	67	32	24	13	29	1.93
5501832--5502040	110	1.9	110	86	2	294	26	20	14	38	1.91
5501845--5502070	110	2.1	110	82	0	272	26	19	13	40	1.89
5502124--5502233	37	3.0	37	75	2	105	13	19	20	47	1.82
5502450--5502501	17	3.1	17	72	10	52	57	1	3	36	1.28
5503439--5503530	8	10.6	8	71	15	67	16	3	4	76	1.08
5503973--5504034	30	2.1	30	87	0	88	46	32	0	20	1.51
5505030--5505078	24	2.1	23	85	7	64	34	2	2	61	1.19
5505023--5505087	22	3.0	20	75	18	58	36	1	3	58	1.23
5508007--5508069	23	2.7	21	80	16	54	52	1	0	46	1.10
5510152--5510199	25	2.0	23	84	8	60	41	0	4	54	1.20
5512191--5512228	20	1.9	20	88	0	58	65	2	0	31	1.06
5513330--5513389	24	2.5	25	84	7	72	31	1	0	66	1.01
5513339--5513389	23	2.2	23	86	6	68	35	1	0	62	1.06
5513343--5513404	23	2.8	22	80	9	63	32	3	0	64	1.09
5513482--5513538	18	3.1	17	74	18	51	47	1	0	50	1.11
5513546--5513584	21	2.0	21	85	10	55	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5522345--5522442	37	2.4	41	76	20	98	60	6	1	32	1.28
5522375--5522487	58	1.9	59	82	8	142	63	6	0	29	1.24
5523206--5523320	58	2.0	59	92	1	196	44	0	1	53	1.17
5527931--5527973	19	2.3	19	100	0	86	44	11	0	44	1.40
5529311--5529357	2	23.5	2	95	0	85	46	2	0	51	1.13
5536385--5536461	27	2.9	27	88	1	111	10	31	10	48	1.71
5537600--5537657	29	2.0	29	86	6	82	34	0	1	63	1.04
5537586--5537664	30	2.7	29	86	4	95	29	1	2	67	1.12
5544700--5544757	27	2.1	28	81	6	66	36	6	5	51	1.51
5549992--5550048	27	2.1	26	87	12	80	24	1	3	70	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109