genome.fa.s35.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  23  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3952877--3952921	23	2.0	23	86	8	65	75	2	17	4	1.07
3953659--3953711	20	2.8	18	75	13	61	66	5	1	26	1.25
3953678--3953702	12	2.1	12	100	0	50	76	8	0	16	1.02
3957359--3957463	47	2.2	46	79	17	110	59	0	0	39	1.11
3958962--3958995	12	2.7	13	90	4	52	82	2	2	11	0.89
3959295--3959323	2	14.5	2	100	0	58	51	0	48	0	1.00
3961073--3961124	21	2.5	21	87	6	70	59	0	0	40	0.97
3966611--3966678	26	2.7	26	79	6	68	63	1	0	35	1.04
3966735--3966790	20	2.8	20	86	2	87	44	5	0	50	1.25
3966866--3966909	16	2.6	17	85	7	54	63	0	4	31	1.14
3967546--3967605	31	2.0	30	83	9	77	36	1	1	60	1.17
3967621--3967677	20	2.8	20	84	10	71	26	5	1	66	1.22
3967621--3967695	21	3.6	20	82	8	80	24	4	2	69	1.19
3967621--3967695	20	3.6	20	77	8	69	24	4	2	69	1.19
3967621--3967664	9	4.6	9	81	13	52	25	4	2	68	1.20
3967659--3967701	21	2.1	21	86	4	61	16	4	2	76	1.05
3968637--3968677	17	2.5	17	80	11	50	43	7	0	48	1.30
3969190--3969309	60	2.0	59	82	14	147	44	0	6	49	1.28
3969751--3969776	13	2.0	13	100	0	52	76	0	0	23	0.78
3970033--3970086	20	2.7	21	82	5	67	72	0	1	25	0.95
3970041--3970094	20	2.6	19	80	13	63	66	0	1	31	1.02
3977355--3977402	19	2.4	21	82	6	55	85	8	6	0	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3978371--3978424	23	2.4	22	81	9	56	53	1	1	42	1.22
3982423--3982448	2	13.0	2	100	0	52	0	0	50	50	1.00
3983789--3983822	17	1.9	18	88	5	52	58	2	5	32	1.37
3990160--3990237	18	4.2	18	76	15	61	17	7	0	74	1.05
3990168--3990245	37	2.1	38	83	13	99	17	6	0	75	1.00
3991709--3991851	65	2.2	65	80	8	164	59	7	10	22	1.56
3995827--3995904	38	2.1	36	85	7	102	78	0	14	7	0.96
3995845--3995894	8	6.5	8	75	25	54	78	0	14	8	0.97
3996588--3996854	63	4.2	61	83	4	273	34	12	24	28	1.92
3997324--3997363	17	2.4	17	91	0	62	32	25	12	30	1.92
3997332--3997364	17	1.9	17	100	0	66	30	27	12	30	1.92
3998636--3998690	14	3.9	14	78	4	56	50	23	1	23	1.58
3998679--3998765	30	2.9	30	82	1	95	44	34	0	20	1.52
3998679--3998827	29	5.3	29	72	14	98	46	30	0	22	1.57
3998739--3998783	21	2.2	21	88	4	65	53	22	2	22	1.57
3998709--3998858	50	3.1	49	77	10	159	47	32	0	19	1.54
3998665--3998858	94	2.1	92	80	7	212	45	31	1	21	1.58
3998788--3998856	13	4.9	14	75	15	61	46	33	0	20	1.51
3998802--3998842	15	2.6	16	92	3	66	43	39	0	17	1.49
3998779--3998871	44	2.1	45	86	6	127	44	34	0	21	1.53
3998947--3999020	14	4.8	16	72	11	57	45	31	1	21	1.60
3998818--3999033	30	7.4	31	73	12	129	48	32	0	18	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3999049--3999078	15	2.0	15	93	0	51	53	36	0	10	1.35
4003228--4003325	49	2.0	49	86	4	135	46	13	12	27	1.78
4007213--4007458	105	2.4	105	95	0	440	30	18	15	35	1.92
4007803--4007865	22	2.9	22	85	4	74	31	17	15	34	1.92
4007765--4008071	132	2.3	132	84	0	391	24	17	16	41	1.89
4008388--4008591	107	1.9	107	85	0	282	20	16	18	44	1.87
4008392--4008712	74	4.4	73	80	5	285	19	16	18	45	1.85
4008388--4008664	36	7.7	36	74	7	229	19	16	18	45	1.86
4009082--4009134	27	2.0	27	88	7	81	71	0	1	26	0.96
4010520--4010603	28	2.9	29	80	5	89	48	23	2	25	1.63
4010520--4010575	14	3.9	14	88	2	76	50	21	3	25	1.65
4010590--4010763	30	5.9	29	77	7	163	48	34	2	14	1.57
4010580--4010751	59	2.9	59	78	2	175	47	34	2	15	1.58
4010754--4010849	29	3.4	28	72	13	79	46	31	1	20	1.58
4010840--4010911	30	2.4	30	81	4	83	48	31	1	18	1.56
4011005--4011035	15	2.1	15	93	0	53	51	38	0	9	1.35
4012312--4012373	21	2.9	21	80	2	79	33	8	20	37	1.83
4012430--4012554	44	2.9	43	78	10	139	37	13	16	32	1.88
4012813--4012996	42	4.5	42	80	6	187	24	10	19	46	1.81
4012842--4012991	81	1.9	80	84	1	201	22	10	20	48	1.79
4013437--4013491	16	3.4	17	78	14	53	16	1	3	78	0.98
4013440--4013492	15	3.4	15	78	14	54	16	1	3	77	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4014711--4014805	48	1.9	51	85	6	133	49	7	11	31	1.66
4014725--4014825	48	2.1	47	80	7	105	52	8	8	29	1.63
4016930--4016964	12	2.9	12	91	0	52	8	2	5	82	0.91
4031034--4031060	14	1.9	14	100	0	54	33	0	0	66	0.92
4033326--4033371	21	2.1	23	84	8	60	52	2	6	39	1.40
4033879--4034070	94	2.0	94	95	0	348	23	20	14	41	1.89
4034310--4034368	12	4.6	13	76	16	61	64	0	0	35	0.94
4034318--4034363	14	3.4	14	75	22	53	65	0	0	34	0.93
4037596--4037629	17	1.9	18	88	5	52	55	0	0	44	0.99
4039668--4039739	29	2.4	29	79	4	72	45	0	4	50	1.21
4040159--4040259	30	3.4	29	78	9	114	41	5	1	50	1.38
4040474--4040521	15	3.2	15	80	11	62	47	8	0	43	1.33
4042893--4042966	24	3.0	24	79	14	73	75	1	18	4	1.03
4043625--4043679	24	2.3	24	84	6	67	12	5	1	80	0.97
4043634--4043684	18	2.8	19	77	14	54	15	1	1	80	0.89
4043641--4043684	12	3.7	12	85	8	63	15	0	2	81	0.78
4046012--4046069	16	3.8	16	84	9	84	27	0	13	58	1.36
4057268--4057304	2	18.5	2	100	0	74	0	48	0	51	1.00
4057304--4057337	2	17.0	2	100	0	68	50	0	0	50	1.00
4062665--4062704	20	2.0	20	85	0	53	47	10	2	40	1.50
4063529--4063589	20	3.0	21	76	19	67	37	0	1	60	1.07
4063529--4063593	22	3.1	21	83	12	73	38	0	1	60	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4063538--4063613	19	3.9	19	80	13	75	35	0	1	63	1.03
4063583--4063612	10	3.1	10	95	4	53	36	0	0	63	0.95
4063585--4063614	9	3.2	9	95	4	51	36	0	0	63	0.95
4063747--4063784	5	7.6	5	82	11	51	65	0	0	34	0.93
4063747--4063785	19	2.0	20	95	5	71	66	0	0	33	0.92
4077428--4077469	18	2.3	19	92	8	70	47	0	0	52	1.00
4077435--4077477	22	2.0	21	86	13	61	44	0	0	55	0.99
4078137--4078208	21	3.5	20	83	3	81	37	6	0	55	1.27
4086541--4086695	52	3.0	51	83	4	177	29	22	7	40	1.82
4086720--4086761	11	3.8	11	87	0	66	50	30	0	19	1.48
4086720--4086762	22	2.0	22	95	0	77	48	30	0	20	1.50
4087607--4087752	52	2.8	51	80	7	143	30	23	6	39	1.81
4087787--4087828	11	3.8	11	87	0	66	50	30	0	19	1.48
4087787--4087829	22	2.0	22	95	0	77	48	30	0	20	1.50
4088678--4088802	52	2.4	52	82	0	142	32	26	6	34	1.82
4088707--4088832	52	2.4	52	81	3	139	29	21	7	41	1.81
4088858--4088899	11	3.8	11	87	0	66	50	30	0	19	1.48
4088858--4088900	22	2.0	22	95	0	77	48	30	0	20	1.50
4090304--4090342	20	1.9	21	84	5	53	25	0	12	61	1.31
4090889--4090918	2	15.0	2	100	0	60	50	0	0	50	1.00
4099658--4099691	17	2.1	17	88	5	52	41	2	2	52	1.31
4102135--4102208	27	2.7	28	79	8	73	40	0	4	55	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4107561--4107643	28	2.8	28	78	7	85	51	0	0	48	1.00
4107567--4107647	39	2.0	40	83	9	103	49	0	0	50	1.00
4107572--4107648	19	3.9	19	69	12	57	48	0	0	51	1.00
4108870--4108931	24	2.5	23	80	17	63	56	1	9	32	1.41
4111276--4111316	20	2.0	20	86	9	57	29	17	9	43	1.80
4113546--4113607	32	1.9	32	87	9	90	61	3	3	32	1.28
4113612--4113715	55	1.9	55	84	4	138	61	3	3	30	1.32
4113680--4113737	26	2.2	25	79	11	64	60	1	5	32	1.29
4113662--4113781	37	3.5	35	71	24	105	59	2	3	35	1.27
4113693--4113746	27	1.9	28	85	14	76	55	1	5	37	1.34

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109