genome.fa.s35.2.7.7.80.10.50.1000.25.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  25  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4262204--4262271	11	5.6	11	78	14	64	7	13	0	79	0.93
4262191--4262257	13	5.5	12	77	16	50	10	13	0	76	1.03
4262265--4262303	17	2.2	17	86	9	51	28	15	10	46	1.78
4272690--4273037	59	5.8	58	78	11	328	35	14	6	43	1.71
4272690--4273027	186	1.8	183	84	6	459	36	14	6	42	1.72
4273057--4273118	5	11.8	5	80	16	72	77	1	3	17	0.98
4273057--4273118	17	3.9	14	78	17	61	77	1	3	17	0.98
4273057--4273127	23	2.9	24	71	23	67	76	2	2	18	1.04
4273139--4273168	13	2.2	14	94	5	53	66	3	0	30	1.07
4273144--4273172	7	4.3	7	91	8	51	72	0	0	27	0.85
4273771--4274009	42	5.8	39	75	17	148	64	1	4	30	1.22
4273783--4273965	14	13.2	14	72	15	82	62	1	4	31	1.26
4273783--4273940	20	8.0	20	74	16	134	62	1	5	30	1.27
4273771--4274016	56	4.4	57	69	17	72	63	1	4	30	1.23
4273810--4274058	14	17.0	14	67	15	71	65	2	3	28	1.20
4273927--4274026	51	2.0	51	80	7	114	67	2	3	28	1.17
4274176--4274221	20	2.3	20	96	0	83	23	26	4	45	1.71
4275458--4275483	2	13.0	2	100	0	52	50	0	0	50	1.00
4277738--4277799	2	31.0	2	96	0	115	51	0	0	48	1.00
4279799--4280072	122	2.3	122	91	3	439	37	13	5	44	1.67
4280100--4280173	5	14.4	5	76	18	64	77	2	2	17	1.01
4280100--4280148	6	8.0	6	81	4	62	79	2	2	16	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4280195--4280246	17	2.9	17	83	13	52	73	0	3	23	1.00
4281057--4281224	20	8.6	20	71	14	100	63	1	5	29	1.24
4281088--4281264	4	46.2	4	69	12	63	64	1	3	29	1.21
4281106--4281250	14	10.6	14	69	19	92	62	2	4	31	1.25
4281121--4281170	22	2.3	23	79	10	68	70	0	2	28	0.99
4281088--4281201	34	3.3	32	85	8	111	64	1	3	30	1.21
4281098--4281264	56	3.1	54	81	7	182	65	1	3	29	1.20
4281204--4281272	36	1.9	36	88	5	104	66	1	2	28	1.14
4281221--4281275	18	3.1	18	71	10	58	69	1	1	27	1.09
4281511--4281893	84	4.4	88	81	8	310	42	21	11	25	1.86
4281695--4281937	41	5.9	41	71	12	174	41	18	11	27	1.86
4281584--4281937	84	4.2	84	87	4	439	42	19	11	26	1.85
4281511--4281877	127	2.8	130	76	10	315	41	21	11	24	1.87
4281511--4281897	43	9.0	43	76	9	335	42	21	11	25	1.86
4282950--4283032	9	9.0	9	74	17	64	4	15	0	79	0.89
4282953--4282987	15	2.3	15	95	0	61	0	20	0	80	0.72
4282934--4283030	31	3.0	31	76	8	104	6	17	0	76	0.99
4282951--4282996	24	1.9	24	90	0	74	0	17	0	82	0.67
4282953--4283031	15	5.6	14	71	8	54	5	15	0	79	0.89
4282951--4282998	8	5.9	8	85	4	60	0	16	0	83	0.65
4282937--4283033	32	3.0	32	79	7	106	7	16	0	76	1.00
4293466--4293813	59	5.8	58	79	11	328	36	14	6	43	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4293466--4293803	185	1.8	183	84	5	466	36	14	6	42	1.72
4293833--4293894	5	11.8	5	80	16	72	77	1	3	17	0.98
4293833--4293894	17	3.9	14	78	17	61	77	1	3	17	0.98
4293833--4293903	23	2.9	24	71	23	67	76	2	2	18	1.04
4293920--4293959	7	5.3	7	83	16	53	72	0	0	27	0.85
4294557--4294620	22	3.0	21	76	13	60	62	0	7	29	1.23
4294577--4294692	31	3.7	29	77	13	97	62	2	4	30	1.27
4294599--4294781	3	56.7	3	68	21	70	64	2	3	30	1.21
4294596--4294831	7	33.6	7	68	22	67	66	2	2	27	1.21
4294667--4294765	47	2.2	44	80	16	100	64	3	3	29	1.23
4294594--4294765	88	2.0	85	82	7	204	64	2	3	29	1.22
4300075--4300125	15	3.4	15	68	10	50	37	11	15	35	1.84
4301175--4301209	13	2.8	13	86	4	54	77	2	0	20	0.90
4302169--4302216	4	12.2	4	80	4	53	68	6	2	22	1.23
4302086--4302185	46	2.1	49	78	12	111	68	11	4	17	1.35
4305225--4305276	21	2.4	22	83	3	61	67	1	0	30	1.02
4305886--4305926	14	2.8	15	85	3	57	19	7	9	63	1.48
4306207--4306242	3	12.0	3	100	0	72	66	0	0	33	0.92
4310272--4310319	24	2.0	25	91	4	80	68	0	2	29	1.01
4315531--4315580	12	4.2	12	82	12	59	8	14	0	78	0.97
4315538--4315576	18	2.2	17	86	4	51	7	12	0	79	0.93
4315532--4315580	23	2.1	23	85	7	64	8	14	0	77	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4316006--4316046	18	2.2	20	86	8	59	65	2	4	26	1.25
4316284--4316389	51	2.1	51	84	5	135	38	11	17	32	1.86
4328242--4328602	78	4.6	78	83	1	447	24	9	21	44	1.82
4328233--4328598	156	2.4	156	89	4	560	24	9	21	43	1.82
4328233--4328601	39	9.5	39	80	7	365	24	9	21	44	1.82
4328781--4328825	3	14.7	3	90	4	72	33	0	2	64	1.06
4329267--4329307	20	2.0	20	90	0	64	24	21	12	41	1.87
4332527--4332630	51	2.0	52	88	1	156	27	22	6	43	1.78
4337450--4337500	26	1.9	27	92	4	86	56	0	11	31	1.35
4339384--4339408	2	12.5	2	100	0	50	48	0	0	52	1.00
4340104--4340171	26	2.6	25	81	6	91	50	1	1	47	1.19
4340104--4340176	25	2.9	26	85	4	96	49	1	1	47	1.18
4340140--4340220	16	5.0	15	71	19	56	50	1	1	46	1.17
4340265--4340540	15	18.5	15	70	22	149	42	0	1	56	1.11
4340270--4340569	13	23.9	13	68	22	132	42	0	1	56	1.10
4340265--4340579	51	6.2	49	73	16	216	42	0	1	55	1.12
4340274--4340547	16	15.3	18	65	21	71	42	0	1	55	1.11
4340270--4340508	23	9.8	23	68	18	87	42	0	1	55	1.11
4340266--4340582	18	17.6	18	70	19	161	42	0	1	55	1.12
4340339--4340582	113	2.1	114	82	10	286	42	0	1	55	1.13
4342468--4342576	53	2.1	53	89	0	164	32	11	8	48	1.68
4344426--4344584	79	2.0	80	91	3	257	23	28	15	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4366287--4366324	20	1.9	20	88	0	58	39	0	0	60	0.97
4366399--4366464	29	2.3	29	82	10	84	43	0	1	54	1.09
4366383--4366589	114	1.8	114	87	0	306	42	3	3	51	1.35
4366592--4366635	16	2.8	15	80	10	52	54	2	0	43	1.12
4366593--4366635	15	2.7	17	86	10	56	53	2	0	44	1.13
4367583--4367870	146	2.0	146	97	0	540	25	23	29	21	1.99
4378121--4378262	72	2.0	71	89	6	216	26	21	12	40	1.89
4379122--4379182	29	2.1	29	96	0	113	54	11	3	31	1.52
4379284--4379324	19	2.2	19	90	0	64	56	7	17	19	1.64
4386778--4387046	134	2.0	134	98	0	520	38	18	17	25	1.93
4388577--4388646	34	2.1	34	86	2	97	45	7	5	41	1.55
4388822--4388859	20	1.9	20	88	0	58	42	0	0	57	0.98
4389252--4389282	16	1.9	16	93	0	53	32	0	0	67	0.91
4389840--4389899	30	2.0	30	83	0	75	50	1	3	45	1.28
4389919--4389957	13	3.0	13	76	0	51	28	0	2	69	1.02
4389927--4389964	18	2.0	20	90	10	62	34	0	2	63	1.09
4392822--4392859	17	2.2	18	86	13	53	65	2	0	31	1.06
4394359--4394489	65	2.0	66	89	4	203	42	9	2	45	1.48
4402548--4402599	25	2.1	25	82	7	61	55	0	0	44	0.99
4402742--4402796	15	3.5	17	71	16	55	67	1	0	30	1.01
4408037--4408108	37	1.9	37	82	0	90	38	15	19	26	1.91
4424744--4424806	33	1.9	33	87	6	92	9	12	6	71	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4429383--4429428	20	2.2	20	85	11	58	47	0	0	52	1.00
4429377--4429428	19	2.7	18	85	8	59	46	0	0	53	1.00
4429414--4429498	33	2.7	32	80	5	84	52	4	0	42	1.22
4429431--4429486	26	2.2	26	86	0	76	55	3	0	41	1.17
4431637--4431672	14	2.6	14	86	0	54	47	2	0	50	1.15
4450506--4450562	3	19.0	3	88	0	87	28	0	38	33	1.57
4450500--4450563	15	4.3	15	89	0	101	26	0	39	34	1.57
4455238--4455307	29	2.4	29	82	2	77	60	2	5	31	1.35
4461764--4461803	21	2.0	20	85	5	53	60	0	0	40	0.97
4462002--4462026	13	1.9	13	100	0	50	48	0	8	44	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109