genome.fa.s35.2.7.7.80.10.50.1000.81.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  81  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16331647--16331702	19	2.9	18	80	12	67	85	0	8	5	0.73
16331645--16331705	30	2.1	29	87	3	86	83	0	11	4	0.79
16333009--16333313	42	7.2	42	80	5	303	23	14	14	47	1.80
16333002--16333362	84	4.3	84	79	4	399	23	14	16	45	1.84
16333002--16333362	126	2.9	124	77	8	397	23	14	16	45	1.84
16333285--16333386	42	2.4	40	80	15	116	22	17	21	38	1.93
16334325--16334368	21	2.2	19	84	12	52	79	2	0	18	0.83
16337762--16337895	66	2.0	66	97	0	250	51	5	5	36	1.51
16337769--16337875	33	3.2	33	65	15	85	52	5	5	36	1.49
16339907--16339974	35	1.9	35	88	5	102	20	2	51	25	1.61
16340213--16340271	29	2.1	28	81	9	66	32	0	5	62	1.17
16343848--16343919	18	4.0	18	83	7	92	33	31	4	30	1.77
16343848--16343949	36	2.9	36	78	9	113	34	31	3	30	1.76
16354359--16354390	16	2.0	16	100	0	64	31	12	12	43	1.80
16358115--16358188	28	2.5	31	80	8	91	45	1	5	47	1.34
16359020--16359068	22	2.2	22	85	0	62	16	22	2	59	1.47
16359472--16359520	10	4.9	10	78	9	55	18	4	0	77	0.92
16359474--16359535	19	3.2	18	82	11	70	19	4	1	74	1.09
16359473--16359535	20	3.2	20	82	8	76	19	4	1	74	1.08
16359720--16359910	49	3.9	49	91	4	305	34	23	16	25	1.96
16359905--16360326	47	8.9	47	86	4	576	37	21	12	28	1.90
16359905--16360326	97	4.4	94	87	4	603	37	21	12	28	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16359905--16360326	144	3.0	144	91	1	654	37	21	12	28	1.90
16366848--16366899	22	2.3	22	78	12	52	50	1	1	46	1.23
16370212--16370242	13	2.5	13	94	5	55	29	0	6	64	1.18
16381434--16381489	9	6.1	9	82	12	69	83	0	10	5	0.78
16381432--16381489	27	2.2	26	88	11	84	84	0	10	5	0.77
16382522--16382559	20	1.9	20	94	0	67	31	7	26	34	1.85
16382837--16383191	42	8.4	42	79	6	335	22	14	16	46	1.83
16382832--16383193	84	4.3	84	80	4	390	22	14	16	46	1.83
16382832--16383188	126	2.8	126	75	9	377	22	14	16	46	1.83
16383236--16383261	10	2.6	10	100	0	52	92	0	0	7	0.39
16384208--16384249	22	1.9	22	85	9	59	80	2	0	16	0.81
16384219--16384250	17	1.9	16	93	6	55	81	3	0	15	0.82
16398473--16398606	66	2.0	66	97	0	250	51	5	5	36	1.51
16398480--16398586	33	3.2	33	65	15	85	52	5	5	36	1.49
16400586--16400662	37	2.1	37	95	0	136	18	2	53	25	1.57
16404545--16404631	33	2.5	33	80	10	95	35	33	2	28	1.70
16404544--16404631	18	5.1	18	73	13	76	36	32	2	28	1.70
16419905--16419963	22	2.5	24	79	20	72	30	0	5	64	1.15
16419957--16419989	3	11.0	3	100	0	66	33	0	0	66	0.92
16420391--16420421	16	1.9	16	100	0	62	32	12	6	48	1.67
16430382--16430415	15	2.3	15	90	10	52	61	5	5	26	1.42
16431209--16431248	20	1.9	21	85	10	55	42	2	0	55	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16437040--16437098	29	2.0	29	96	0	109	52	0	1	45	1.10
16437040--16437108	33	2.2	33	87	10	101	50	0	1	47	1.09
16437108--16437139	16	2.1	15	94	5	55	34	0	0	65	0.93
16437111--16437148	16	2.4	16	86	4	51	42	0	0	57	0.98
16438327--16438371	23	2.0	23	90	0	72	60	17	2	20	1.47
16440495--16440566	37	1.9	37	88	0	108	19	19	18	43	1.89
16441587--16441611	11	2.3	11	100	0	50	28	24	8	40	1.83
16443577--16443618	2	21.0	2	95	0	75	50	2	0	47	1.14
16444751--16444793	13	3.3	13	87	6	52	41	11	4	41	1.62
16447696--16447745	26	1.9	26	95	0	91	48	20	6	26	1.72
16448040--16448714	337	2.0	335	90	1	1075	48	11	3	36	1.56
16448860--16448971	33	3.6	31	74	16	97	58	20	0	20	1.45
16451088--16451173	29	3.0	29	81	3	102	26	10	10	52	1.68
16451957--16452011	24	2.3	24	90	0	92	16	18	34	30	1.93
16453625--16453651	12	2.2	12	100	0	54	14	48	7	29	1.71
16454922--16454954	11	3.0	11	95	0	57	72	0	3	24	0.98
16454997--16455122	29	4.2	29	71	21	107	45	35	0	18	1.55
16455044--16455122	28	2.8	29	81	7	92	44	35	0	20	1.52
16455369--16455498	64	2.0	65	84	10	169	36	13	10	39	1.80
16455938--16455993	27	2.1	27	96	0	103	42	5	10	41	1.62
16456233--16456267	15	2.3	15	100	0	70	45	17	0	37	1.48
16464939--16464973	8	4.4	8	96	0	61	51	0	8	40	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16465338--16465398	31	2.0	30	87	3	86	49	4	0	45	1.23
16465480--16465540	21	2.9	21	72	2	59	34	4	1	59	1.29
16465519--16465553	16	2.1	18	89	10	56	31	8	0	60	1.27
16469161--16469205	23	2.0	23	86	0	63	42	0	4	53	1.21
16469762--16469826	28	2.4	26	78	16	69	60	3	7	29	1.40
16475714--16475767	28	1.9	28	96	0	99	25	14	22	37	1.93
16476059--16476096	18	2.1	18	90	0	58	42	2	0	55	1.14
16476100--16476149	12	4.0	13	75	17	52	46	4	0	50	1.20
16476185--16476212	12	2.3	12	100	0	56	28	0	0	71	0.86
16476883--16476923	17	2.4	17	87	0	55	65	0	0	34	0.93
16477157--16477217	31	2.0	31	90	6	97	50	3	0	45	1.17
16479208--16479268	29	2.1	29	81	6	70	45	1	0	52	1.10
16480595--16480666	37	1.9	37	86	5	101	19	20	18	41	1.90
16484055--16484181	62	2.0	62	93	0	218	25	14	7	52	1.66
16486629--16486680	21	2.5	21	93	0	86	50	3	15	30	1.62
16488071--16488111	21	1.9	22	85	14	59	43	34	2	19	1.64
16494335--16494381	16	2.9	15	82	14	58	40	4	4	51	1.41
16494345--16494381	17	2.3	17	90	9	60	37	0	5	56	1.22
16509071--16509117	21	2.2	21	84	0	58	38	17	23	21	1.93
16516447--16517173	360	2.0	360	100	0	1454	36	19	11	32	1.88
16522161--16522547	194	2.0	193	86	3	546	35	14	12	37	1.84
16522603--16522632	12	2.5	12	100	0	60	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16523123--16523159	18	2.1	18	89	0	56	51	8	0	40	1.32
16524002--16524047	23	2.1	23	84	8	60	21	15	17	45	1.85
16524268--16524396	68	1.9	68	91	0	213	51	4	6	37	1.48
16527751--16527881	68	1.9	68	96	0	244	49	7	7	35	1.60
16530455--16530510	18	3.3	18	65	14	55	28	5	7	58	1.46
16530442--16530510	33	2.1	33	94	0	120	28	5	5	59	1.44
16531686--16531715	1	30.0	1	100	0	60	0	0	0	100	0.00
16540997--16541246	80	3.1	79	85	2	329	23	7	24	44	1.79
16544710--16544800	45	2.0	45	100	0	182	32	8	15	42	1.78
16545775--16545807	16	2.1	16	94	0	57	63	0	0	36	0.95
16545817--16545879	32	2.0	32	90	0	99	44	1	1	52	1.20
16553315--16553431	53	2.2	52	83	8	148	34	15	15	35	1.89
16553616--16553646	16	1.9	16	100	0	62	51	22	6	19	1.69
16553560--16553793	82	2.9	81	80	2	263	42	12	11	33	1.78
16553775--16553819	17	2.6	17	85	0	63	33	8	17	40	1.81
16553924--16553991	17	4.0	17	82	0	73	39	14	19	26	1.90
16553900--16554000	17	5.9	17	78	0	67	38	10	18	31	1.86
16554317--16554459	43	3.2	45	78	13	136	44	13	6	35	1.70
16554382--16554533	22	6.8	21	71	12	79	46	14	7	31	1.72
16554351--16554537	89	2.1	89	84	5	245	47	14	6	31	1.71
16554382--16554546	45	3.7	46	76	7	178	47	13	7	31	1.71
16554466--16554537	23	3.2	21	73	13	63	48	16	9	25	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16559694--16559760	33	2.0	33	97	0	125	25	14	11	47	1.79
16560510--16560534	3	8.3	3	100	0	50	68	32	0	0	0.90
16564597--16564658	27	2.3	27	91	5	99	43	19	4	32	1.72
16565017--16565062	2	23.0	2	90	0	74	45	4	0	50	1.21
16565017--16565062	16	2.9	16	100	0	92	45	4	0	50	1.21
16567048--16567114	7	9.9	7	73	10	50	80	4	13	1	0.93
16567082--16567107	7	3.7	7	100	0	52	76	11	11	0	1.01
16569257--16569308	3	17.3	3	91	0	86	63	0	1	34	1.06
16571360--16571398	21	1.9	20	89	5	60	25	15	0	58	1.37
16572196--16572253	22	2.8	21	80	10	66	24	5	10	60	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109