genome.fa.s35.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  35  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5339744--5341039	106	12.3	106	68	13	349	18	16	14	50	1.78
5340664--5340918	141	1.8	141	81	5	318	16	17	14	51	1.76
5340695--5341050	141	2.5	140	81	3	394	16	17	14	51	1.77
5340772--5341094	176	1.8	176	79	1	369	16	17	16	50	1.78
5341193--5341350	85	1.8	86	84	1	219	17	20	10	51	1.74
5341194--5341364	86	2.0	85	81	1	198	18	19	11	50	1.77
5341996--5342509	211	2.4	211	80	5	563	16	18	14	51	1.77
5342995--5343200	69	2.9	70	79	10	190	18	19	12	49	1.79
5342991--5343213	104	2.1	105	80	6	238	18	19	12	49	1.78
5343779--5344220	176	2.5	176	78	6	398	19	16	13	51	1.77
5343978--5344360	212	1.8	212	82	2	482	16	16	15	51	1.76
5343978--5344422	212	2.1	212	80	3	473	16	17	14	50	1.78
5342957--5352729	105	93.6	104	67	13	719	18	17	13	50	1.78
5345932--5346277	106	3.3	106	75	6	263	19	17	13	50	1.78
5346601--5346806	106	1.9	105	80	5	236	15	17	16	50	1.79
5346601--5347086	176	2.8	176	79	5	450	17	18	14	49	1.80
5347151--5347380	106	2.2	105	77	2	246	18	18	13	50	1.78
5347151--5347427	71	3.9	69	73	8	220	17	18	14	50	1.79
5347150--5347427	141	2.0	141	80	2	317	17	17	14	50	1.78
5347151--5347640	212	2.3	213	80	4	526	17	18	14	50	1.79
5347471--5347681	107	2.0	105	81	3	244	17	20	13	47	1.81
5347950--5348096	72	2.1	71	81	7	165	19	16	12	51	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5348436--5348594	71	2.2	69	82	9	187	21	15	13	50	1.77
5349001--5349379	207	1.8	207	81	3	476	18	16	14	50	1.78
5349358--5349473	36	3.3	35	78	6	108	19	18	13	48	1.81
5349687--5349745	31	1.9	31	89	6	93	16	23	10	49	1.77
5349874--5351197	35	37.6	35	67	14	243	18	16	13	51	1.76
5350829--5351587	106	7.3	102	69	12	325	18	18	13	49	1.79
5350794--5351114	141	2.3	139	78	7	351	18	16	13	52	1.75
5350823--5351303	212	2.3	211	79	5	515	17	18	14	49	1.80
5350792--5351384	35	16.8	35	73	9	177	18	17	14	49	1.80
5351325--5351419	35	2.7	33	78	13	84	21	20	13	45	1.85
5351456--5353152	35	48.7	34	68	12	235	18	17	14	50	1.78
5351460--5351653	69	2.8	70	77	10	184	17	19	13	49	1.79
5351808--5351873	17	3.8	17	68	18	55	16	15	12	56	1.68
5352491--5353331	106	8.0	106	70	11	370	18	17	13	50	1.78
5352777--5353048	141	1.9	141	81	4	325	17	16	13	51	1.77
5352807--5353163	141	2.5	141	81	2	387	16	16	14	51	1.77
5351820--5354607	35	79.3	35	70	9	666	18	17	13	49	1.79
5353181--5353293	37	3.1	36	74	3	102	23	15	8	51	1.72
5353306--5353463	86	1.8	86	83	1	210	17	20	9	52	1.72
5354657--5354755	35	2.9	34	77	5	101	17	21	13	48	1.80
5354804--5354878	35	2.1	35	85	2	96	16	18	13	52	1.75
5354819--5354896	35	2.2	35	79	4	86	17	20	11	50	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5354986--5356745	35	50.0	35	72	9	648	18	17	14	49	1.79
5355081--5356745	105	15.8	105	71	8	723	18	17	14	49	1.79
5355670--5355851	71	2.6	70	80	2	184	18	11	18	51	1.75
5355989--5356427	176	2.5	174	78	8	392	18	17	14	49	1.79
5356119--5356690	212	2.7	210	80	6	573	17	17	14	50	1.78
5356577--5356744	72	2.4	70	81	7	196	20	19	13	47	1.82
5356295--5356744	212	2.1	212	79	4	487	18	18	14	48	1.81
5356172--5356745	247	2.3	245	77	5	580	17	18	15	49	1.80
5356805--5357012	35	5.9	35	70	8	118	16	21	13	49	1.79
5356928--5357031	35	2.9	34	72	14	86	14	18	14	52	1.74
5357141--5357224	35	2.4	35	84	4	98	20	17	9	52	1.72
5357180--5357454	70	3.9	71	72	8	174	17	18	13	51	1.76
5357200--5357316	35	3.3	35	89	1	171	15	17	16	51	1.77
5357138--5357370	70	3.3	69	76	4	207	17	16	14	52	1.75
5357403--5357487	36	2.4	35	84	2	107	18	16	10	54	1.70
5357201--5357487	35	8.2	36	70	13	118	16	17	13	52	1.75
5358777--5359011	35	6.7	35	72	11	140	17	20	13	48	1.80
5358804--5360923	35	61.0	35	68	13	361	18	17	13	50	1.78
5359185--5362965	70	54.5	70	68	13	586	18	17	13	50	1.78
5359210--5359954	105	7.1	104	76	7	470	18	16	14	50	1.78
5360684--5360834	71	2.1	71	81	1	178	17	21	11	49	1.78
5360881--5360974	36	2.7	36	77	9	95	18	18	9	54	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5361118--5364732	35	104.1	35	67	14	513	18	17	13	50	1.78
5362345--5362553	104	2.0	105	84	0	276	18	16	13	51	1.77
5363209--5363258	24	2.1	24	85	7	66	16	22	10	52	1.73
5364107--5364142	15	2.4	15	100	0	72	19	13	11	55	1.68
5364165--5368265	35	118.5	35	68	12	516	18	17	13	49	1.79
5364580--5364609	16	1.9	15	93	6	51	20	23	10	46	1.80
5364809--5364886	34	2.3	34	82	12	97	16	14	14	55	1.70
5364925--5365038	36	3.2	36	77	3	106	20	21	13	45	1.84
5366050--5366096	25	1.9	25	86	4	69	12	14	12	59	1.61
5366075--5366243	71	2.4	71	81	4	180	16	18	13	52	1.75
5366588--5368254	140	11.9	141	71	11	642	18	17	13	50	1.79
5367601--5367668	36	1.9	35	87	3	100	14	17	11	55	1.68
5367725--5368211	211	2.3	213	78	7	492	17	16	14	51	1.77
5368318--5368426	35	3.1	35	72	15	98	17	21	12	48	1.80
5368729--5368911	70	2.6	70	78	10	178	17	17	13	51	1.77
5368668--5368878	105	2.0	109	80	12	240	17	18	12	51	1.75
5368719--5368968	35	7.1	35	74	13	149	19	17	12	50	1.77
5369491--5370223	35	21.0	35	70	12	204	19	17	13	49	1.80
5369620--5374255	35	132.9	34	67	13	384	18	18	13	50	1.78
5369610--5370018	141	3.0	138	77	10	395	18	17	13	50	1.78
5369798--5370040	134	1.8	134	81	3	301	19	16	13	50	1.78
5369969--5370359	177	2.2	177	98	0	755	19	21	12	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5370749--5371654	105	8.6	104	72	11	426	18	16	13	52	1.75
5371258--5371527	107	2.6	104	78	6	247	18	12	15	53	1.73
5371417--5371714	141	2.1	141	77	6	318	16	16	14	52	1.75
5372312--5372484	71	2.5	70	82	8	192	17	17	12	53	1.73
5373175--5373550	106	3.6	105	78	7	273	17	15	15	51	1.77
5373319--5373688	141	2.6	141	79	7	396	17	17	14	51	1.77
5372742--5380900	35	232.3	36	68	13	809	18	17	13	50	1.78
5374084--5374185	36	2.9	36	77	13	113	15	23	13	47	1.82
5374946--5375115	71	2.4	71	81	2	189	21	15	12	51	1.76
5374946--5375218	107	2.6	107	80	5	261	19	13	13	53	1.72
5376176--5376211	17	2.1	18	94	5	65	11	13	11	63	1.51
5376666--5376875	107	2.0	107	81	4	246	20	13	14	51	1.75
5377076--5377350	141	2.0	140	81	2	327	17	16	14	50	1.78
5377107--5377522	141	3.0	141	79	5	360	16	16	14	52	1.76
5377071--5377581	212	2.4	212	78	5	527	17	16	14	51	1.76
5377072--5377712	177	3.6	175	77	7	494	18	17	13	51	1.77
5377410--5377717	142	2.2	141	79	4	336	19	18	12	50	1.77
5379533--5379634	36	2.9	35	79	13	109	18	23	10	47	1.80
5379495--5379902	71	5.8	71	71	12	227	18	20	12	49	1.78
5379724--5380406	106	6.5	105	73	12	380	18	16	13	51	1.77
5380306--5380637	141	2.4	141	77	7	329	16	17	13	52	1.75
5381000--5381203	35	5.8	34	77	9	135	20	20	13	46	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5381237--5381384	35	4.2	34	73	11	100	17	20	12	49	1.79
5382082--5382289	107	2.0	107	80	4	242	21	13	13	51	1.75
5382133--5382299	71	2.4	71	81	5	185	22	14	11	50	1.75
5382133--5382618	141	3.5	141	75	9	331	18	15	13	51	1.76
5382873--5383579	340	2.1	339	90	0	1092	18	18	12	50	1.78
5383209--5383433	104	2.1	106	82	6	269	16	17	14	51	1.77
5381602--5383487	35	54.0	34	70	11	484	18	16	13	50	1.77
5383548--5383694	35	4.2	34	72	9	109	14	19	15	49	1.79
5382873--5383662	339	2.3	338	87	2	967	17	18	13	50	1.78
5383988--5384379	105	3.8	104	74	8	280	21	17	10	50	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109