genome.fa.s35.2.7.7.80.10.50.1000.77.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  77  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15465577--15465638	21	3.0	21	75	20	60	48	0	0	51	1.00
15465567--15465629	14	4.5	15	69	26	50	49	0	0	50	1.00
15465556--15465649	29	3.2	30	84	11	117	50	0	0	50	1.00
15466073--15466115	22	2.0	22	90	4	70	51	0	0	48	1.00
15466132--15466157	13	2.0	13	100	0	52	69	0	0	30	0.89
15466618--15466666	17	2.8	17	78	3	53	48	0	0	51	1.00
15473009--15473047	19	2.1	19	85	9	53	53	0	2	43	1.14
15476430--15476459	8	3.8	8	90	0	51	36	3	13	46	1.60
15477189--15477241	26	2.0	26	88	0	79	20	24	9	45	1.81
15481266--15481296	2	15.5	2	100	0	62	51	0	0	48	1.00
15481894--15481949	17	3.4	17	71	14	53	3	23	8	64	1.38
15490118--15490144	2	13.5	2	100	0	54	51	0	0	48	1.00
15494575--15494655	41	2.0	40	90	2	126	45	8	11	34	1.70
15497796--15497847	10	5.1	10	74	21	54	28	9	19	42	1.82
15498793--15498857	10	6.8	9	77	11	58	55	4	0	40	1.21
15498794--15498866	19	3.8	19	75	12	78	56	5	0	38	1.23
15498803--15498883	39	2.1	39	81	9	94	59	6	0	34	1.23
15498968--15499017	18	2.8	17	82	11	55	60	4	0	36	1.16
15498945--15499002	19	2.9	20	75	15	57	55	1	0	43	1.10
15498950--15499009	20	3.0	20	73	14	61	58	3	0	38	1.15
15498986--15499095	20	5.7	19	74	12	91	58	9	0	31	1.36
15498950--15499068	48	2.4	48	80	9	125	57	6	0	35	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15498985--15499095	9	11.5	10	69	19	67	57	9	0	32	1.36
15499035--15499163	9	13.8	9	73	14	57	55	6	2	36	1.38
15498996--15499095	40	2.6	39	80	10	107	58	10	1	31	1.38
15499055--15499203	8	17.2	8	67	18	52	58	3	2	35	1.29
15499055--15499167	9	12.2	9	72	12	77	53	4	2	38	1.35
15499113--15499170	26	2.2	27	84	3	82	53	0	1	44	1.10
15499169--15499214	16	2.6	17	83	13	58	73	0	4	21	1.00
15499262--15499311	20	2.7	18	82	14	66	52	4	0	44	1.20
15499261--15499311	19	2.7	19	84	3	68	52	3	0	43	1.19
15499272--15499317	20	2.3	22	75	21	55	45	2	0	52	1.13
15499487--15499529	19	2.3	19	84	8	52	37	2	2	58	1.24
15499507--15499558	27	1.9	27	84	0	68	28	1	3	65	1.21
15499620--15499652	17	1.9	17	93	0	57	51	0	3	45	1.16
15499737--15499860	41	3.0	42	81	6	119	36	0	8	54	1.38
15499737--15499860	42	3.0	41	81	6	126	36	0	8	54	1.38
15499845--15499889	22	2.1	20	84	12	54	44	0	8	46	1.34
15499845--15499889	21	2.1	21	87	4	63	44	0	8	46	1.34
15499710--15499934	10	22.4	10	70	11	120	34	1	8	55	1.40
15499879--15499943	10	6.5	10	71	7	51	29	1	12	56	1.45
15501268--15501303	17	2.1	18	89	5	56	41	22	16	19	1.90
15501777--15501810	14	2.5	14	90	4	52	20	5	2	70	1.21
15510442--15510476	18	1.9	18	94	0	61	28	45	11	14	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15511217--15511274	27	2.2	27	84	3	73	29	10	36	24	1.88
15512432--15512481	25	2.0	25	92	0	82	28	20	12	40	1.87
15516027--15516660	329	1.9	334	85	3	888	31	14	19	34	1.92
15520814--15520869	25	2.3	25	84	6	71	42	14	21	21	1.88
15520827--15520875	25	2.0	25	91	0	80	42	12	18	26	1.85
15530918--15530964	15	3.1	15	84	12	60	36	4	2	57	1.30
15530918--15530966	16	3.1	16	80	14	57	36	4	2	57	1.30
15531135--15531990	221	3.9	216	74	10	523	31	10	7	50	1.64
15530951--15531991	218	4.8	220	74	9	803	30	10	7	51	1.65
15531952--15532079	67	1.9	67	83	0	166	28	15	7	48	1.71
15532520--15532568	18	2.6	19	78	15	57	30	0	2	67	1.02
15531541--15533293	938	1.9	934	79	6	1981	31	10	6	52	1.60
15532047--15532837	218	3.6	215	73	10	606	31	9	5	53	1.56
15532774--15532831	20	2.8	20	73	5	53	37	6	6	48	1.57
15533226--15533304	19	4.2	19	76	16	74	29	5	3	62	1.34
15537801--15537867	23	2.9	24	81	16	72	58	2	10	28	1.46
15537825--15537867	21	1.9	23	86	13	63	58	4	6	30	1.45
15537902--15538089	96	2.0	90	87	6	268	38	6	10	43	1.66
15541415--15541487	37	2.0	37	94	0	128	39	16	16	27	1.90
15545837--15546319	243	2.0	239	87	5	706	28	10	9	50	1.69
15546264--15546294	3	10.7	3	93	6	55	29	0	0	70	0.87
15547074--15547109	19	1.9	18	88	5	54	13	2	5	77	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15551205--15551260	17	3.3	17	75	25	55	21	8	8	60	1.54
15551207--15551255	17	2.9	17	82	14	66	24	8	8	59	1.54
15586871--15586928	25	2.4	24	80	8	64	36	0	1	62	1.06
15587004--15587062	13	3.8	15	78	17	59	28	1	1	67	1.10
15587876--15587955	38	2.1	38	97	0	151	48	3	7	40	1.49
15589327--15589359	17	1.9	17	93	0	57	33	0	3	63	1.10
15589760--15589800	20	2.1	20	86	4	57	31	2	2	63	1.20
15590191--15590796	214	2.8	215	79	8	562	32	9	5	53	1.55
15591056--15591102	17	2.9	16	84	9	51	74	6	12	6	1.20
15591055--15591102	16	2.9	16	81	9	53	72	6	12	8	1.26
15592413--15592464	18	2.8	17	77	13	50	30	3	3	61	1.32
15601321--15601363	2	21.5	2	100	0	86	48	0	0	51	1.00
15602732--15602779	25	1.9	25	86	0	69	39	8	12	39	1.73
15602982--15603028	19	2.5	19	100	0	94	59	0	4	36	1.17
15605867--15605902	11	3.2	11	92	4	54	58	0	13	27	1.36
15609205--15609265	28	2.2	28	81	0	77	50	1	3	44	1.28
15609205--15609272	28	2.4	28	76	9	75	48	1	2	47	1.26
15610572--15610738	82	2.0	84	80	6	189	53	13	13	19	1.72
15623092--15623546	63	7.3	62	72	9	280	39	10	9	40	1.72
15623099--15623599	63	8.0	62	72	8	257	38	9	10	41	1.73
15623118--15623466	187	1.9	186	79	5	400	38	10	9	41	1.71
15623321--15623560	124	1.9	124	81	8	290	39	10	8	42	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15623400--15623682	63	4.4	63	72	14	207	39	10	12	38	1.77
15629941--15629978	16	2.4	16	86	0	58	39	0	7	52	1.31
15634895--15635080	74	2.5	72	76	2	183	51	6	9	32	1.61
15635045--15635286	112	2.1	114	80	8	271	50	4	8	36	1.54
15635316--15635396	37	2.2	37	84	8	103	50	11	0	38	1.38
15637349--15637435	37	2.4	37	96	0	165	12	8	17	62	1.53
15638257--15638281	6	4.2	6	100	0	50	52	0	0	48	1.00
15638224--15638282	29	2.0	28	84	12	75	50	3	1	44	1.28
15640441--15640474	18	1.9	18	88	5	52	85	0	8	5	0.75
15640936--15641253	164	2.0	158	83	6	406	19	17	16	45	1.85
15642134--15642172	16	2.4	16	86	0	51	48	2	10	38	1.51
15642541--15642573	16	2.0	17	88	5	50	72	0	0	27	0.85
15646625--15646663	19	2.1	19	90	9	62	66	0	0	33	0.92
15647647--15647678	2	16.0	2	100	0	64	50	0	0	50	1.00
15648474--15648518	17	2.6	17	78	0	54	48	15	6	28	1.70
15649097--15649138	19	2.3	18	84	12	50	30	4	4	59	1.39
15650049--15650073	11	2.3	11	100	0	50	16	8	20	56	1.65
15650891--15651081	96	2.0	96	91	0	310	32	14	23	29	1.94
15652330--15652371	7	5.7	7	79	20	50	14	2	2	80	0.90
15652330--15652371	15	2.9	14	83	16	50	14	2	2	80	0.90
15653753--15653777	13	1.9	13	100	0	50	24	12	8	56	1.62
15659341--15659640	104	2.9	104	77	11	327	37	13	10	38	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15663317--15663373	19	3.2	19	80	12	66	50	0	5	43	1.24
15667187--15667214	3	9.3	3	100	0	56	67	0	0	32	0.91
15667208--15667300	46	2.0	46	89	0	141	34	11	4	49	1.59
15667607--15667653	12	4.4	10	80	17	51	4	12	0	82	0.80
15667607--15667662	28	2.0	28	82	6	69	7	16	0	76	0.99
15671970--15671998	9	3.3	9	95	4	51	0	0	6	93	0.36
15672050--15672108	30	2.0	30	93	0	100	35	11	20	32	1.89
15672081--15672132	21	2.7	18	77	14	50	32	15	19	32	1.93
15672436--15672467	17	1.9	17	93	6	57	6	6	9	78	1.10
15672461--15672526	29	2.3	28	80	14	82	22	1	7	68	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109