genome.fa.s35.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  50  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9480221--9480286	34	1.9	34	87	6	98	40	10	12	36	1.77
9480513--9480545	17	1.9	17	88	11	50	54	0	0	45	0.99
9487664--9487693	14	2.1	14	93	0	51	73	0	23	3	0.98
9488457--9488485	2	14.5	2	100	0	58	48	0	0	51	1.00
9495283--9495338	18	3.4	17	83	16	73	46	0	0	53	1.00
9495228--9495338	34	3.6	31	75	19	88	51	0	0	47	1.06
9495237--9495344	27	3.7	27	70	21	76	51	0	0	47	1.07
9496441--9496467	2	13.5	2	100	0	54	48	0	51	0	1.00
9498834--9498858	3	8.3	3	100	0	50	64	0	0	36	0.94
9503840--9503906	32	2.1	32	100	0	134	26	8	32	31	1.87
9507272--9507296	2	12.5	2	100	0	50	48	0	0	52	1.00
9508370--9508470	46	2.3	45	80	11	118	36	16	13	32	1.89
9508384--9508473	46	1.9	47	88	2	137	34	17	15	32	1.92
9508782--9508808	3	9.0	3	100	0	54	66	0	0	33	0.92
9518128--9518156	1	29.0	1	100	0	58	0	0	0	100	0.00
9519089--9519416	163	2.0	163	95	0	593	34	13	21	30	1.92
9533065--9533113	18	2.7	18	75	15	55	61	6	0	32	1.21
9541838--9541867	2	15.5	2	93	6	53	46	0	0	53	1.00
9543324--9543377	27	2.0	27	81	0	63	46	3	35	14	1.63
9543753--9543781	2	14.5	2	100	0	58	48	0	0	51	1.00
9546429--9546466	12	3.0	13	84	7	51	57	0	0	42	0.98
9547495--9547527	2	17.0	2	93	6	59	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9552931--9552956	2	13.0	2	100	0	52	50	0	0	50	1.00
9553980--9554015	16	2.2	16	95	0	63	52	5	0	41	1.24
9566904--9566949	11	3.9	11	83	11	56	28	0	0	71	0.86
9566929--9566980	16	3.2	16	81	10	61	32	0	1	65	1.04
9569321--9569429	19	5.7	18	69	17	60	60	0	0	38	1.03
9569334--9569410	22	3.3	22	73	18	66	58	1	0	40	1.06
9569405--9569447	22	2.0	22	86	9	61	60	0	0	39	0.97
9569836--9569880	20	2.2	20	84	8	54	55	0	8	35	1.31
9581029--9581106	29	2.6	31	83	6	97	44	7	0	47	1.31
9584083--9584109	2	13.5	2	100	0	54	48	51	0	0	1.00
9592160--9592231	20	3.5	21	77	11	69	51	1	1	45	1.18
9592231--9592269	11	3.4	11	85	7	51	84	7	7	0	0.77
9592293--9592357	23	2.8	25	80	15	77	21	50	12	15	1.76
9592313--9592349	12	3.2	12	82	17	51	18	48	16	16	1.81
9593216--9593273	9	5.9	9	75	18	53	20	0	1	77	0.86
9593212--9593264	23	2.5	21	82	14	56	24	0	0	75	0.80
9593218--9593279	32	2.0	31	87	9	90	20	0	1	77	0.85
9593227--9593276	16	3.2	14	79	20	55	20	0	2	78	0.86
9601674--9601711	10	4.0	10	83	13	53	60	0	0	39	0.97
9602253--9602319	17	4.2	16	81	11	75	23	1	2	71	1.08
9602740--9602791	15	3.4	15	79	10	52	76	3	1	17	1.02
9603893--9604059	40	4.2	40	80	6	142	41	14	11	31	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9603923--9604093	80	2.1	79	81	8	186	43	14	12	29	1.82
9604242--9604325	34	2.5	34	82	3	98	36	16	15	30	1.90
9604385--9604566	88	2.1	88	97	0	346	23	15	13	47	1.81
9611743--9611840	51	1.9	51	82	0	124	35	7	14	42	1.73
9618292--9618333	20	2.2	20	86	4	59	59	7	0	33	1.25
9618835--9618877	13	3.2	13	87	9	59	23	0	34	41	1.55
9620357--9620397	3	13.7	3	100	0	82	65	0	0	34	0.93
9620509--9620576	3	22.7	3	76	11	68	39	0	1	58	1.07
9620506--9620576	12	5.7	12	80	9	88	40	0	1	57	1.07
9620493--9620559	30	2.2	30	86	5	91	41	0	1	56	1.08
9620494--9620577	6	14.0	6	79	0	69	44	0	1	54	1.07
9625418--9625493	15	5.1	15	74	15	59	73	2	0	23	0.95
9626332--9626456	3	43.7	3	72	12	93	60	4	3	32	1.34
9626334--9626386	13	4.1	13	83	9	72	58	1	1	37	1.20
9626728--9626789	24	2.6	23	82	14	72	22	1	3	72	1.08
9627185--9627228	3	14.7	3	100	0	88	31	0	0	68	0.90
9627274--9627320	19	2.5	19	83	10	60	76	2	0	21	0.89
9627279--9627312	12	2.7	13	86	4	52	76	2	0	20	0.92
9628706--9628746	2	20.5	2	100	0	82	48	0	0	51	1.00
9629632--9629675	21	2.1	21	83	8	54	65	0	2	31	1.05
9630257--9630313	29	2.0	29	89	6	89	31	17	12	38	1.87
9631243--9631280	2	19.0	2	94	0	67	50	2	0	47	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9633555--9633629	29	2.8	26	72	18	71	38	4	6	50	1.47
9635010--9635037	2	14.0	2	100	0	56	50	0	0	50	1.00
9635949--9635982	17	2.1	17	88	5	52	26	8	0	64	1.22
9636713--9636753	2	20.5	2	100	0	82	48	0	0	51	1.00
9636931--9636969	19	2.1	18	85	4	51	43	0	5	51	1.24
9637766--9637797	2	16.0	2	93	0	55	53	0	0	46	1.00
9637906--9637933	2	14.0	2	100	0	56	50	0	0	50	1.00
9638835--9638867	2	17.0	2	87	6	50	51	3	0	45	1.16
9639949--9639983	18	1.9	18	100	0	70	40	5	5	48	1.51
9644426--9644471	23	2.0	23	95	0	83	39	10	17	32	1.84
9647083--9647118	2	18.0	2	100	0	72	50	0	0	50	1.00
9648442--9648485	21	2.1	20	87	8	61	31	0	0	68	0.90
9648853--9648911	21	2.8	21	73	2	55	16	6	3	72	1.20
9648849--9648892	24	1.9	23	86	9	63	15	6	2	75	1.12
9648848--9648899	21	2.3	23	80	9	63	13	7	1	76	1.07
9649449--9649490	22	1.9	22	85	9	59	33	0	4	61	1.17
9656147--9656186	19	2.2	18	86	4	53	30	0	5	65	1.14
9656142--9656186	18	2.5	19	82	7	58	28	0	4	66	1.11
9656421--9656467	24	2.0	24	82	0	58	85	2	6	6	0.82
9658845--9658875	16	2.0	15	93	6	53	51	0	0	48	1.00
9658968--9659012	17	2.7	17	80	12	58	60	0	4	35	1.17
9660435--9660475	2	20.5	2	100	0	82	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9661781--9661909	56	2.3	56	96	2	235	45	12	6	34	1.69
9661781--9661924	54	2.6	56	91	4	195	47	11	6	34	1.65
9662562--9662623	16	3.8	17	77	8	58	29	3	14	53	1.57
9662679--9662720	11	3.7	11	82	14	50	57	4	0	38	1.20
9662679--9662720	12	3.5	12	79	20	52	57	4	0	38	1.20
9663410--9663462	22	2.4	22	80	0	61	5	5	13	75	1.16
9665530--9665567	20	1.9	20	84	10	51	42	0	10	47	1.38
9666027--9666073	24	2.0	23	87	4	67	53	6	40	0	1.27
9666045--9666092	17	2.9	17	76	14	55	47	4	47	0	1.21
9677303--9677332	8	3.9	8	91	8	53	0	0	10	90	0.47
9677303--9677333	15	2.1	15	93	0	53	0	0	12	87	0.55
9683129--9683162	18	1.9	18	88	5	52	26	0	0	73	0.83
9685676--9685735	28	2.2	28	81	3	68	8	11	3	76	1.12
9685676--9685738	27	2.4	28	79	10	71	9	11	3	76	1.13
9686167--9686224	26	2.2	26	87	3	80	10	10	1	77	1.06
9686796--9686861	29	2.2	33	78	15	79	39	0	3	57	1.14
9689954--9690324	128	3.0	124	75	13	391	27	12	12	47	1.77
9690111--9690425	110	2.8	111	76	9	280	29	9	11	49	1.70
9690339--9690597	133	2.0	131	85	4	351	30	7	10	50	1.65
9691787--9691826	9	4.1	9	84	15	53	82	0	12	5	0.82
9691778--9691830	22	2.4	24	76	23	62	75	3	13	7	1.15
9693322--9693368	23	2.0	23	91	0	76	29	12	19	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9693624--9693862	46	5.3	44	73	10	164	33	5	15	46	1.68
9693608--9693780	91	1.9	91	83	2	222	34	4	16	45	1.67
9693723--9693824	22	4.5	23	71	14	77	30	5	15	48	1.69
9693723--9693859	44	3.0	44	83	9	136	31	7	13	48	1.69
9694015--9694049	18	1.9	18	88	0	52	40	8	2	48	1.49
9694135--9694203	35	2.0	35	85	5	95	42	13	5	39	1.68
9694326--9694390	35	1.9	33	81	12	78	35	13	10	40	1.80
9694536--9694576	17	2.4	16	84	11	55	26	7	17	48	1.73
9695541--9695591	12	4.5	11	76	18	52	15	1	13	68	1.30
9696527--9696553	14	1.9	14	100	0	54	44	18	0	37	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109