genome.fa.s35.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167860.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_13, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22724830

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   

This is table  30  of  109  ( 12961 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5107186--5107421	70	3.4	69	74	12	207	55	12	14	18	1.70
5107357--5107435	35	2.3	35	80	8	97	53	10	16	20	1.71
5107515--5107594	36	2.3	35	82	6	90	50	11	16	22	1.76
5107632--5108248	35	17.6	35	70	11	275	53	12	14	18	1.73
5107644--5108422	70	11.0	71	71	13	298	52	12	15	18	1.74
5107599--5108713	35	31.7	35	69	12	245	51	12	15	19	1.75
5108342--5108419	38	2.2	35	84	11	104	56	16	14	12	1.68
5108593--5108674	34	2.4	36	81	10	107	53	8	17	20	1.69
5108739--5109008	35	7.7	35	72	9	111	48	12	20	18	1.80
5109353--5109433	35	2.3	34	79	10	92	54	12	17	16	1.71
5109806--5110056	104	2.4	106	76	6	253	50	9	19	20	1.75
5109795--5110037	35	6.9	35	71	10	140	50	9	19	20	1.76
5109795--5110053	71	3.7	71	71	13	200	49	9	20	20	1.76
5110198--5110917	35	20.5	35	71	9	216	51	13	16	17	1.76
5110072--5110323	131	1.9	130	80	4	292	51	12	17	18	1.76
5110198--5113754	70	51.3	70	68	13	577	51	13	16	18	1.77
5111207--5113660	35	70.9	35	70	12	594	51	13	16	18	1.77
5111868--5112289	143	3.0	141	79	6	370	52	14	16	16	1.74
5112836--5113462	141	4.4	141	74	7	407	52	14	14	19	1.75
5113311--5113736	35	12.1	35	73	11	137	50	14	16	18	1.78
5113989--5122722	35	251.3	35	69	11	1293	51	13	16	18	1.77
5114271--5114664	205	1.9	205	80	6	458	52	15	14	17	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5114152--5118283	176	23.8	175	69	14	980	51	13	16	18	1.77
5114811--5114977	71	2.4	69	79	9	180	52	11	16	18	1.74
5114933--5115437	142	3.6	141	73	6	346	53	13	13	19	1.73
5119145--5119181	17	2.1	19	90	10	60	67	10	10	10	1.42
5120277--5120432	69	2.2	69	80	9	174	58	10	13	17	1.63
5120670--5120869	69	2.9	67	75	12	174	53	15	14	17	1.73
5121268--5121416	81	1.8	81	80	8	178	45	10	22	20	1.82
5121456--5121702	134	1.8	136	80	1	300	51	13	14	19	1.76
5122967--5123417	35	13.2	35	69	11	118	50	11	18	20	1.77
5123036--5123134	36	2.8	36	74	7	103	52	12	19	16	1.74
5123247--5123417	36	4.9	35	74	4	110	49	12	18	19	1.78
5124780--5142613	35	509.2	36	69	14	691	52	12	15	19	1.74
5124920--5125991	106	10.3	104	68	14	285	51	12	16	20	1.75
5124792--5125207	141	3.0	141	76	7	310	50	10	16	23	1.75
5124792--5125193	71	5.7	71	69	14	217	50	9	16	23	1.75
5124779--5125250	71	6.7	69	69	13	203	50	10	16	23	1.75
5125166--5125409	129	1.9	130	81	2	294	52	13	15	18	1.75
5125659--5126154	211	2.3	210	78	5	482	51	12	16	18	1.75
5125294--5148671	105	223.0	104	70	12	5294	52	12	15	19	1.74
5125365--5142665	141	123.4	140	69	12	2302	52	12	15	19	1.74
5126131--5126181	25	2.0	25	96	0	93	54	13	7	23	1.65
5126130--5126178	13	3.8	14	76	17	61	57	14	8	20	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5126342--5148671	70	319.4	70	70	12	5672	52	12	15	19	1.74
5127050--5127311	142	1.9	141	81	2	328	53	13	13	19	1.73
5127981--5128184	107	1.9	106	81	5	241	55	9	16	18	1.67
5128137--5128333	100	2.0	99	82	5	236	52	11	15	19	1.73
5128433--5128631	101	1.9	104	85	3	278	53	13	15	17	1.72
5128292--5128684	171	2.3	175	78	7	433	54	14	13	17	1.71
5128552--5128878	176	1.9	175	81	4	399	54	11	16	17	1.71
5128552--5128932	176	2.2	175	78	6	385	53	12	16	18	1.73
5128906--5128989	28	2.9	29	89	7	134	51	13	13	22	1.75
5129872--5129942	31	2.2	32	85	5	90	57	9	12	19	1.63
5132263--5132725	177	2.6	175	80	6	515	52	9	16	21	1.72
5134438--5134899	212	2.2	210	81	8	521	53	8	16	22	1.69
5134403--5135237	317	2.6	317	78	7	766	52	9	16	21	1.71
5135245--5135310	32	2.1	31	86	8	89	59	13	12	15	1.62
5135539--5135788	138	1.8	138	80	3	306	50	13	17	19	1.78
5138037--5138612	209	2.7	209	75	7	529	53	11	14	19	1.71
5138086--5139235	209	5.5	208	73	10	469	52	13	14	19	1.74
5139256--5139323	33	2.1	33	91	0	109	55	8	14	20	1.65
5139452--5139513	34	1.9	31	93	6	81	46	8	22	22	1.78
5140143--5140292	69	2.1	71	82	2	178	52	13	16	17	1.74
5140403--5143160	106	26.4	104	69	13	445	53	12	15	19	1.73
5140646--5140896	133	1.9	130	80	5	290	53	14	13	17	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5140683--5140872	98	2.0	96	83	4	238	52	13	14	19	1.74
5140778--5140929	72	2.1	72	81	7	175	52	14	15	17	1.75
5141492--5141804	102	3.0	104	78	3	263	50	11	17	19	1.76
5142075--5142133	19	3.2	19	65	18	52	59	10	13	16	1.61
5142003--5142560	213	2.6	211	80	8	610	55	11	13	19	1.68
5130614--5142700	35	343.8	35	70	11	3703	52	12	15	19	1.74
5142764--5143162	35	11.3	35	77	9	292	52	13	15	19	1.74
5142852--5143125	143	1.9	142	80	5	311	53	13	14	18	1.73
5142834--5143160	178	1.8	178	83	3	435	52	13	14	18	1.74
5143242--5143287	21	2.2	21	92	0	74	60	10	10	17	1.57
5143364--5145206	35	52.8	35	69	14	505	51	12	17	19	1.76
5144590--5144675	42	2.0	42	84	4	111	54	6	17	20	1.66
5145002--5145205	106	1.9	106	82	4	250	52	13	16	17	1.74
5145254--5146104	35	24.2	35	71	10	238	52	12	15	19	1.74
5145254--5145381	68	1.9	68	85	1	175	57	13	12	17	1.66
5145270--5145381	34	3.3	33	89	3	152	55	12	13	18	1.69
5145270--5145892	35	17.8	35	73	10	274	53	11	15	19	1.72
5145513--5145646	72	1.9	71	84	7	182	53	11	12	22	1.70
5145408--5145664	107	2.4	106	78	7	238	53	12	13	21	1.71
5145990--5146211	106	2.1	106	81	5	261	51	12	16	19	1.76
5146054--5146619	35	16.5	35	68	12	210	51	12	17	19	1.76
5146054--5146214	71	2.3	73	75	15	174	51	12	18	18	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5146638--5147070	35	12.2	35	72	8	160	53	13	14	18	1.73
5146510--5146747	128	1.9	129	81	2	291	53	12	16	17	1.73
5146771--5146920	36	4.2	37	75	15	127	57	13	12	17	1.65
5147018--5147103	35	2.5	35	78	3	93	52	8	17	22	1.70
5147154--5147228	35	2.1	35	85	4	98	61	14	10	13	1.57
5147154--5147242	35	2.5	35	81	3	90	58	14	12	14	1.64
5147654--5147962	71	4.4	67	73	14	205	55	11	14	18	1.69
5147286--5148675	35	39.5	35	70	9	341	52	12	15	19	1.74
5148785--5148858	38	2.0	36	82	12	89	55	13	14	16	1.70
5148897--5148981	36	2.3	37	80	9	86	54	10	17	17	1.71
5150181--5150244	33	1.9	34	90	3	103	26	15	9	48	1.75
5150411--5150511	34	2.9	35	78	10	102	18	14	14	51	1.76
5150594--5150681	36	2.5	36	81	9	101	19	18	12	50	1.78
5150745--5150819	35	2.1	35	80	4	80	17	16	9	57	1.64
5150871--5151018	35	4.2	35	72	6	111	16	16	14	52	1.76
5151306--5152699	35	39.7	35	71	10	460	19	17	13	50	1.78
5151497--5152626	106	10.7	104	72	9	447	18	16	13	51	1.77
5152744--5152845	36	2.9	35	75	5	98	17	18	12	50	1.77
5153079--5153880	35	22.9	35	68	11	301	19	15	13	51	1.75
5153517--5153648	71	1.9	71	82	6	169	21	15	13	49	1.79
5153433--5153659	106	2.1	106	80	4	244	19	14	13	51	1.75
5153516--5153896	139	2.7	139	79	9	375	19	15	13	52	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5153084--5153896	70	11.6	70	70	11	355	18	15	13	52	1.75
5153945--5154113	35	4.8	35	75	11	130	17	17	11	53	1.73
5154127--5154202	35	2.2	35	83	6	93	21	17	10	51	1.74
5154341--5154609	36	7.6	35	71	11	154	19	15	12	52	1.74
5154450--5154610	72	2.3	71	81	4	189	19	13	12	54	1.71
5154237--5154829	35	16.9	35	69	11	180	19	16	13	51	1.76
5154742--5154829	36	2.5	35	81	9	99	19	18	12	50	1.78
5154893--5154967	35	2.1	35	80	4	80	17	16	9	57	1.64
5155022--5155284	35	7.6	34	67	13	108	17	17	13	51	1.76
5155098--5155223	67	1.9	67	81	3	155	16	18	14	50	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109