genome.fa.s4.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  102  of  193  ( 23090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32917731--32917946	78	2.8	76	87	4	281	36	22	17	24	1.95
32920753--32920785	17	1.9	17	93	0	57	15	18	15	51	1.77
32938973--32939019	17	2.7	17	86	3	58	2	14	0	82	0.75
32940060--32940102	20	2.1	21	83	12	54	2	37	0	60	1.10
32951472--32951623	39	3.9	39	77	8	139	39	19	15	26	1.90
32951472--32951616	78	1.9	78	82	2	184	39	18	15	26	1.91
32955448--32955488	15	2.9	15	75	24	52	36	17	7	39	1.77
32955582--32955804	77	2.8	80	79	13	234	46	13	7	32	1.71
32955816--32956033	85	2.6	85	86	3	300	44	12	12	30	1.80
32958007--32958069	30	2.1	31	90	3	101	26	28	20	23	1.99
32960106--32960372	30	9.0	30	77	12	205	32	23	7	35	1.84
32960235--32960394	30	5.4	30	77	8	141	33	25	7	33	1.84
32960120--32960372	59	4.3	58	80	7	228	33	24	7	35	1.83
32960117--32960372	118	2.2	118	79	6	270	32	24	7	35	1.83
32960178--32960394	59	3.7	58	79	10	192	33	25	7	33	1.85
32965397--32965462	14	4.5	15	75	16	50	74	0	25	0	0.82
32966286--32966560	146	1.9	146	83	3	365	36	17	25	20	1.95
32966271--32966569	49	6.1	48	72	10	221	36	16	26	20	1.94
32966845--32966939	48	2.0	48	85	8	131	35	14	25	24	1.93
32966749--32967494	123	6.1	123	84	3	908	40	16	20	22	1.91
32967093--32967184	48	1.9	48	86	0	130	41	17	20	20	1.91
32967337--32967428	48	1.9	48	86	0	130	40	14	22	22	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32967564--32967888	46	7.2	46	84	4	356	33	24	17	25	1.96
32967631--32967897	134	2.0	134	90	1	419	32	25	17	24	1.97
32967636--32967927	134	2.2	134	85	5	405	33	26	17	23	1.96
32969490--32969525	18	2.1	18	89	5	56	41	0	25	33	1.55
32972156--32972293	29	4.7	29	77	8	118	36	23	5	34	1.79
32972114--32972286	58	2.9	57	81	9	172	35	25	5	33	1.80
32972113--32972283	88	1.9	88	82	4	211	35	25	5	33	1.80
32972114--32972303	59	3.2	59	82	6	199	34	25	6	32	1.83
32972114--32972308	30	6.6	29	79	7	173	34	25	6	33	1.82
32972360--32972431	29	2.6	27	70	14	65	29	8	0	62	1.24
32973566--32973615	23	2.1	25	82	14	61	36	0	2	62	1.07
32978099--32978135	17	2.2	17	95	0	65	37	27	16	18	1.92
32978774--32978856	23	3.6	23	82	6	96	42	22	19	15	1.89
32982060--32982246	55	3.5	52	88	5	275	36	24	15	23	1.94
32984345--32984369	13	1.9	13	100	0	50	48	4	8	40	1.51
32984698--32984773	40	1.9	38	81	5	89	26	15	19	38	1.92
32986446--32986478	16	2.1	16	94	0	57	54	3	18	24	1.57
32987462--32987700	52	4.6	52	94	0	415	24	15	24	35	1.94
32988901--32989054	53	2.9	53	83	3	168	29	35	15	20	1.93
32989062--32989236	55	3.2	55	85	0	224	27	37	16	18	1.93
32991282--32991349	29	2.3	29	79	0	82	36	22	19	22	1.95
32991461--32991552	40	2.3	40	82	0	112	23	17	22	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32992012--32992115	53	2.0	53	88	0	154	27	38	16	17	1.91
32992093--32992188	41	2.3	41	82	3	104	34	34	11	19	1.88
32993840--32994654	358	2.3	354	89	3	1258	30	13	13	42	1.83
32999143--32999180	17	2.1	19	85	9	53	73	0	15	10	1.09
32999783--33000068	87	3.3	87	78	10	314	35	8	18	37	1.82
33004206--33004470	138	1.9	138	94	0	467	46	16	12	24	1.82
33016283--33016332	23	2.2	23	89	3	75	56	4	10	30	1.51
33017904--33017928	11	2.3	11	100	0	50	44	0	0	56	0.99
33017916--33017987	30	2.4	30	90	2	110	47	1	0	51	1.09
33017948--33017990	22	2.0	22	90	4	70	51	0	0	48	1.00
33019164--33019206	21	2.0	22	86	4	61	37	0	4	58	1.19
33019164--33019255	6	15.8	6	71	17	52	39	1	4	55	1.27
33019173--33019248	17	4.8	17	75	13	74	38	1	3	56	1.26
33019806--33019860	7	8.0	7	80	8	60	67	1	1	29	1.11
33020879--33021110	29	8.0	29	76	11	165	37	26	2	33	1.69
33020914--33021143	29	8.0	28	78	13	170	37	26	3	32	1.72
33020881--33021144	58	4.6	58	73	14	192	36	27	2	33	1.71
33021009--33021171	29	5.7	30	77	13	123	39	26	3	30	1.71
33021097--33021198	29	3.6	28	83	8	111	35	27	5	31	1.81
33023824--33023985	35	4.6	35	89	1	216	35	11	22	30	1.90
33023806--33023985	71	2.5	70	80	4	218	35	12	22	29	1.91
33026256--33026280	13	1.9	13	100	0	50	40	0	8	52	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33026535--33026718	52	3.5	52	85	1	244	28	15	23	32	1.95
33029084--33029128	19	2.4	19	81	7	56	37	0	4	57	1.19
33029902--33029942	22	1.9	21	85	5	55	12	12	2	73	1.20
33031436--33031474	20	2.0	20	89	0	60	48	2	10	38	1.51
33036701--33036742	13	3.2	13	77	12	50	42	2	14	40	1.58
33037482--33037578	21	4.6	21	81	2	115	31	13	23	30	1.93
33037463--33037578	42	2.8	42	96	1	207	31	14	22	31	1.94
33039640--33039672	12	2.8	12	95	4	59	24	42	18	15	1.88
33039727--33039764	18	2.2	18	86	9	53	10	42	21	26	1.85
33043473--33043525	19	2.9	18	76	15	54	66	3	0	30	1.10
33043621--33043661	21	1.9	22	95	5	75	60	0	0	39	0.96
33054861--33054927	32	2.1	31	81	13	75	65	2	4	26	1.26
33054774--33054926	10	14.9	10	66	15	53	66	2	3	28	1.21
33055011--33055068	20	2.9	20	82	10	73	56	1	0	41	1.09
33057190--33057218	6	5.0	6	91	8	51	13	0	0	86	0.58
33060277--33060309	16	2.1	16	94	0	57	69	3	9	18	1.28
33060279--33060318	16	2.4	16	87	4	53	72	2	10	15	1.21
33061081--33061140	32	1.9	32	89	3	95	53	8	3	35	1.48
33061023--33061422	149	2.7	147	84	7	483	43	8	3	44	1.51
33061849--33061883	13	2.7	13	86	0	52	65	0	0	34	0.93
33061885--33061919	9	3.9	9	92	0	61	68	22	0	8	1.16
33063029--33063224	42	4.6	42	82	7	191	34	11	27	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33063108--33063263	84	1.8	85	80	4	190	37	11	25	26	1.90
33064927--33065059	59	2.3	58	80	7	144	37	21	3	36	1.72
33064929--33065059	30	4.5	27	72	15	82	38	20	3	37	1.71
33065059--33065095	16	2.3	16	100	0	74	24	21	0	54	1.45
33068654--33068684	11	2.9	11	95	4	55	25	19	16	38	1.92
33069656--33069703	13	3.6	13	84	15	55	83	0	16	0	0.65
33069656--33069697	18	2.4	17	84	4	57	85	0	14	0	0.59
33070576--33070628	22	2.4	21	87	9	70	83	0	16	0	0.66
33070940--33071152	112	1.9	112	92	0	354	28	21	12	37	1.90
33074010--33074344	49	6.9	49	75	4	246	35	16	27	21	1.94
33074010--33074345	98	3.4	98	85	0	449	35	16	27	21	1.94
33074655--33074844	46	4.2	46	85	4	258	31	26	17	24	1.97
33074658--33074837	91	2.0	92	86	3	256	31	25	18	24	1.98
33075270--33075322	20	2.6	19	79	8	52	79	13	0	7	0.93
33076596--33076796	30	6.7	30	77	7	167	36	20	3	39	1.70
33076596--33076790	60	3.3	58	79	9	189	36	21	3	38	1.71
33076593--33076796	90	2.3	89	81	6	243	36	21	3	38	1.70
33077303--33077503	93	2.2	92	99	0	393	46	18	15	19	1.84
33079560--33079593	17	1.9	18	88	5	52	38	26	5	29	1.80
33083001--33083048	24	2.0	23	84	4	60	18	14	8	58	1.61
33084206--33084259	21	2.6	21	72	0	54	27	12	24	35	1.92
33086029--33086083	27	2.0	27	89	0	83	29	12	25	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33088271--33088299	10	2.7	11	89	10	51	0	24	0	75	0.80
33088978--33089004	14	1.9	14	100	0	54	0	37	0	62	0.95
33093243--33093343	29	3.5	29	72	12	93	35	5	22	35	1.79
33093225--33093549	58	5.6	57	81	6	305	33	5	24	36	1.79
33093280--33093489	29	7.2	28	69	18	117	33	5	23	37	1.77
33093240--33093577	116	2.9	116	82	4	360	35	5	24	35	1.77
33093353--33093540	29	6.5	28	68	15	105	34	3	26	35	1.73
33093352--33093613	30	9.0	30	66	18	110	34	4	25	35	1.76
33094758--33094792	15	2.3	15	90	9	54	31	2	0	65	1.07
33095439--33095477	17	2.2	18	90	4	62	58	2	2	35	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193