genome.fa.s4.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  111  of  193  ( 23090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35674897--35675044	55	2.7	56	87	2	208	25	14	25	35	1.94
35674897--35675067	55	3.1	55	83	2	146	26	16	23	33	1.96
35674897--35675073	83	2.1	83	82	2	212	26	15	23	34	1.95
35689053--35689151	40	2.5	40	90	1	155	43	17	25	14	1.86
35690184--35690980	205	3.9	205	93	1	1355	35	20	22	21	1.96
35691336--35691378	17	2.5	17	88	0	59	37	0	6	55	1.27
35692120--35692402	29	9.6	30	76	7	233	34	24	3	37	1.74
35692117--35692398	58	4.8	58	77	8	268	34	23	3	37	1.73
35692128--35692409	88	3.2	87	75	12	272	34	24	3	36	1.74
35692165--35692430	29	9.1	29	75	11	195	34	27	3	34	1.72
35693157--35693213	28	2.0	28	100	0	114	40	17	3	38	1.67
35694785--35694826	17	2.4	18	84	7	52	26	0	2	71	0.98
35701560--35701978	139	3.0	136	80	10	474	46	7	2	43	1.44
35701715--35701782	31	2.3	28	82	9	91	55	2	0	41	1.15
35701742--35701792	21	2.4	22	83	6	61	52	3	0	43	1.19
35701798--35701840	19	2.2	20	92	8	72	46	4	0	48	1.22
35701856--35701916	31	1.9	32	86	3	88	59	4	1	34	1.29
35701945--35701992	21	2.2	22	85	7	62	39	8	0	52	1.32
35706111--35706150	18	2.3	18	86	4	55	32	7	7	52	1.58
35712054--35712078	7	3.6	7	100	0	50	28	0	44	28	1.55
35723033--35723072	21	1.9	21	84	0	53	45	2	15	37	1.59
35730971--35731121	80	1.9	80	88	0	230	23	19	24	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35735648--35735747	38	2.7	38	76	7	105	34	25	13	28	1.93
35738752--35738816	17	3.9	17	83	4	78	16	21	12	49	1.79
35740023--35740122	38	2.7	37	76	16	107	35	25	13	27	1.92
35742348--35742415	24	2.8	24	95	0	118	55	7	11	25	1.61
35742335--35742422	24	3.7	24	87	0	104	51	9	14	25	1.72
35744336--35744423	24	3.7	24	81	6	97	53	7	12	26	1.65
35744912--35745237	158	2.1	158	87	0	463	23	20	23	32	1.98
35745561--35745612	21	2.5	21	83	0	68	34	21	15	28	1.94
35759829--35759866	20	2.0	20	89	5	60	2	18	18	60	1.48
35762950--35762980	16	1.9	16	93	0	53	58	0	0	41	0.98
35763668--35763732	29	2.2	30	83	5	78	36	4	13	44	1.65
35774222--35774251	15	1.9	16	93	6	53	43	6	30	20	1.77
35779718--35779915	30	6.8	28	69	23	131	32	4	30	32	1.76
35779688--35779901	30	7.3	29	69	22	128	33	4	30	31	1.78
35779691--35779915	59	3.9	58	87	4	319	33	4	30	32	1.78
35779718--35779998	118	2.4	116	84	8	329	34	3	28	33	1.75
35779904--35780007	30	3.5	30	77	11	90	35	2	23	38	1.70
35781136--35781182	24	2.0	24	83	8	60	40	2	10	46	1.50
35781812--35781880	27	2.6	26	88	6	102	17	14	26	42	1.87
35781812--35781880	13	5.1	14	76	18	74	17	14	26	42	1.87
35781928--35781967	17	2.4	17	87	8	55	55	0	2	42	1.13
35782311--35782955	200	3.2	200	93	1	1069	20	22	20	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35784691--35784729	17	2.3	17	100	0	78	33	5	41	20	1.74
35793602--35793735	70	1.9	70	95	0	241	38	22	17	21	1.93
35795311--35795401	28	3.2	28	67	11	76	32	4	32	29	1.77
35795319--35795528	30	7.1	30	68	25	144	31	5	30	32	1.80
35795247--35795565	59	5.5	58	89	3	437	33	4	30	32	1.77
35795363--35795452	29	3.1	29	69	24	80	35	5	30	28	1.80
35795581--35795648	30	2.3	30	79	5	75	38	7	17	36	1.78
35795261--35795632	118	3.2	116	84	8	341	33	4	29	32	1.78
35797468--35797535	13	5.0	13	71	18	50	17	16	26	39	1.90
35797466--35797535	27	2.6	27	93	0	122	18	15	25	40	1.90
35797482--35797530	13	3.7	13	74	15	55	14	18	26	40	1.89
35797600--35797640	17	2.3	18	91	4	66	53	0	2	43	1.13
35798089--35798125	20	1.9	19	89	10	58	48	2	0	48	1.15
35813300--35813340	20	2.0	20	95	0	73	65	0	2	31	1.05
35813447--35813499	20	2.5	21	85	14	74	33	1	1	62	1.17
35818147--35818307	30	5.4	30	67	13	91	37	3	26	33	1.72
35818083--35818330	118	2.1	117	86	5	340	37	3	27	31	1.74
35818082--35818319	59	4.0	59	84	5	293	36	3	27	32	1.74
35819213--35819320	55	2.0	55	96	3	202	25	12	9	51	1.70
35820265--35820312	16	2.9	17	84	6	62	45	0	2	52	1.12
35821055--35821133	37	2.1	38	85	2	106	35	25	15	24	1.94
35823737--35823774	2	19.5	2	94	5	69	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35833905--35833958	17	3.5	17	66	23	55	38	1	12	46	1.53
35835672--35835723	21	2.5	21	81	6	61	36	30	13	19	1.90
35836411--35836706	52	5.7	52	92	0	466	35	25	14	24	1.93
35840896--35841071	91	1.9	91	94	0	307	34	14	20	30	1.93
35841829--35842046	52	4.2	51	90	2	337	36	25	11	26	1.90
35841829--35842046	103	2.1	104	93	0	366	36	25	11	26	1.90
35845108--35845161	21	2.6	21	84	0	72	31	25	11	31	1.91
35855161--35855188	14	2.0	14	100	0	56	35	28	0	35	1.58
35857386--35857453	28	2.3	29	75	12	68	45	0	4	50	1.22
35862259--35862307	10	4.8	10	75	5	53	81	2	10	6	0.94
35862460--35862558	31	3.3	30	81	8	94	60	12	5	22	1.51
35862487--35862558	31	2.3	31	95	0	126	62	12	6	18	1.51
35864859--35864918	23	2.5	24	83	8	68	58	0	3	38	1.15
35866237--35866410	90	1.9	90	84	0	231	47	13	12	27	1.78
35871412--35871463	26	2.0	26	100	0	104	34	15	3	46	1.64
35871412--35871474	26	2.4	26	92	5	92	36	14	3	46	1.61
35871618--35871669	21	2.5	21	81	6	61	30	26	13	28	1.94
35874951--35875003	21	2.6	19	83	16	70	28	13	26	32	1.93
35876326--35876486	23	6.9	22	73	14	110	43	21	22	12	1.86
35876362--35876486	23	5.3	23	79	8	128	44	21	22	12	1.85
35876319--35876452	69	1.9	66	84	11	171	43	20	22	13	1.87
35879802--35879843	18	2.3	18	84	8	50	47	4	33	14	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35880447--35880725	132	2.1	132	89	0	423	22	24	25	28	1.99
35882140--35882176	18	2.1	18	89	0	56	24	27	0	48	1.51
35886023--35886064	22	1.9	22	85	0	57	47	2	4	45	1.36
35893126--35893173	21	2.5	20	86	10	64	37	0	43	18	1.51
35906018--35906044	2	13.5	2	100	0	54	51	0	48	0	1.00
35907114--35907171	10	6.1	9	78	7	53	39	1	1	56	1.19
35907114--35907171	19	3.1	19	78	14	66	39	1	1	56	1.19
35913473--35913629	83	2.0	77	87	7	224	40	11	19	28	1.86
35916349--35916438	31	2.9	31	80	6	103	56	1	6	35	1.33
35916421--35916478	17	3.5	17	71	4	55	56	1	1	39	1.19
35919585--35919652	29	2.4	29	82	2	75	41	4	23	30	1.74
35921490--35922060	161	3.6	158	83	7	694	25	17	25	31	1.97
35921490--35922059	78	7.2	78	83	6	666	25	17	25	31	1.97
35921490--35922044	239	2.3	240	85	8	726	25	18	24	31	1.97
35921545--35922256	196	3.6	194	78	10	624	25	17	25	31	1.97
35921505--35922401	352	2.5	352	83	6	1051	25	17	24	31	1.97
35921490--35922334	274	3.1	274	81	7	824	25	17	25	31	1.97
35922047--35922409	78	4.6	78	87	3	478	25	15	25	32	1.96
35921467--35922396	40	23.5	40	73	10	549	25	17	24	32	1.97
35923009--35923340	112	3.0	110	88	3	513	39	10	18	31	1.85
35928819--35928977	29	5.4	30	77	12	152	38	3	19	38	1.70
35928806--35928973	59	2.9	58	76	11	164	41	4	18	35	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35928814--35928997	88	2.1	87	80	9	196	39	5	19	36	1.74
35935272--35935334	24	2.6	24	89	0	99	50	11	14	23	1.74
35937270--35937321	25	2.1	25	85	0	68	55	7	9	26	1.59
35938054--35938133	6	13.8	6	73	10	51	55	5	0	40	1.22
35938038--35938133	17	5.6	16	75	11	84	54	4	1	40	1.27
35947978--35948004	3	9.0	3	100	0	54	66	0	0	33	0.92
35951363--35951410	2	24.5	2	95	4	89	50	0	0	50	1.00
35951817--35951853	20	1.9	19	89	10	58	59	0	0	40	0.97
35953360--35953399	18	2.3	18	86	4	55	67	0	2	30	1.04
35954280--35954376	51	1.9	51	82	4	124	35	5	11	48	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193