genome.fa.s4.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  138  of  193  ( 23090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43266479--43266506	14	2.0	14	100	0	56	50	0	0	50	1.00
43272423--43272451	13	2.1	14	93	6	51	89	0	10	0	0.48
43279473--43279506	15	2.1	17	89	10	54	64	0	0	35	0.94
43284324--43284358	16	2.2	16	89	0	52	54	0	8	37	1.31
43284727--43284962	126	1.9	126	83	3	305	36	18	16	29	1.93
43285488--43285659	63	2.8	62	78	3	186	27	47	11	13	1.78
43285587--43285619	12	2.8	12	90	9	50	33	48	18	0	1.48
43285551--43285815	108	2.4	110	91	1	426	26	48	10	14	1.76
43285638--43285768	60	2.2	60	78	0	136	28	51	7	12	1.68
43285704--43285815	48	2.3	48	82	0	134	27	51	7	13	1.66
43285812--43285836	12	2.1	12	100	0	50	24	52	16	8	1.70
43291327--43291373	25	1.9	25	91	4	78	34	6	2	57	1.36
43297577--43297656	26	3.2	26	69	16	78	48	10	2	38	1.50
43297557--43297656	49	2.0	49	98	0	191	51	9	2	38	1.45
43297580--43297655	23	3.2	23	63	17	55	47	10	2	39	1.52
43300708--43300783	28	2.7	29	73	4	66	40	2	2	53	1.28
43300742--43300789	6	8.3	6	81	9	64	41	2	0	56	1.11
43300733--43300789	17	3.3	17	95	2	96	42	1	0	56	1.10
43304113--43304148	15	2.2	17	90	9	58	38	0	33	27	1.57
43309268--43309304	17	2.2	17	95	4	67	10	8	5	75	1.17
43314759--43314788	15	1.9	16	93	6	53	13	10	0	76	1.01
43317329--43317707	59	6.4	59	85	3	469	33	30	2	33	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43317322--43317672	29	11.9	29	67	23	164	33	29	2	33	1.72
43317329--43317704	177	2.1	177	85	3	517	33	30	2	33	1.72
43329687--43330528	201	4.2	201	91	2	1241	36	21	23	18	1.95
43332860--43333088	30	7.8	28	70	21	139	33	27	2	35	1.71
43332867--43333299	59	7.3	59	83	6	502	34	29	1	34	1.68
43332966--43333060	31	3.1	31	71	19	92	32	24	2	41	1.67
43332858--43333255	30	13.5	30	65	24	129	34	28	1	34	1.68
43337517--43337555	14	2.7	15	80	8	53	56	10	7	25	1.59
43341009--43341036	3	9.3	3	100	0	56	32	32	0	35	1.58
43343670--43343724	24	2.3	24	84	6	67	25	14	9	50	1.72
43349160--43349210	26	2.0	27	88	7	79	41	11	3	43	1.60
43355230--43355380	49	3.1	48	71	1	122	32	15	23	27	1.96
43356475--43356517	6	7.2	6	89	0	59	20	30	0	48	1.50
43359714--43359809	41	2.3	41	96	0	174	35	29	7	28	1.84
43359799--43359837	17	2.3	17	86	0	51	48	25	10	15	1.76
43365642--43365666	3	8.3	3	100	0	50	32	32	0	36	1.58
43377184--43377282	24	4.1	24	94	0	162	57	7	11	24	1.58
43379029--43379079	24	2.1	24	96	0	93	56	5	11	25	1.57
43380682--43380755	23	3.3	22	80	3	85	39	31	18	10	1.86
43380743--43380796	23	2.3	23	90	0	81	44	20	25	9	1.81
43381250--43381279	10	2.8	11	90	10	53	20	6	10	63	1.47
43384436--43384536	52	2.0	52	86	9	147	32	5	12	48	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43385393--43385525	49	2.7	50	80	4	155	33	14	25	27	1.94
43386394--43386434	17	2.3	18	80	16	50	53	0	4	41	1.22
43389122--43389148	6	4.5	6	100	0	54	0	33	0	66	0.92
43390343--43390378	14	2.5	14	90	4	54	0	11	2	86	0.68
43391105--43391192	39	2.3	39	97	0	167	29	6	21	42	1.79
43392775--43392806	17	1.9	16	93	6	55	78	0	15	6	0.95
43397550--43397587	14	2.6	14	95	4	67	65	0	28	5	1.14
43398308--43398445	69	2.0	69	84	4	179	42	6	10	40	1.66
43400018--43400215	59	3.4	57	74	8	191	35	4	30	29	1.76
43400191--43400392	30	6.7	30	91	2	300	34	1	24	39	1.67
43402314--43402374	17	3.7	16	80	6	68	54	4	0	40	1.22
43402364--43402397	17	2.0	17	88	0	50	52	11	0	35	1.38
43402881--43403511	68	8.9	68	84	7	803	29	19	17	33	1.95
43402733--43403517	213	3.7	213	93	2	1338	29	19	17	33	1.94
43415430--43415509	30	2.7	30	86	5	110	31	3	26	38	1.74
43416608--43416641	3	11.0	3	87	6	50	35	0	2	61	1.11
43416608--43416638	16	1.9	16	93	0	53	35	0	3	61	1.12
43417427--43417487	17	3.7	16	80	6	68	54	4	0	40	1.22
43417477--43417510	17	2.0	17	88	0	50	52	11	0	35	1.38
43420074--43420191	6	19.5	6	74	19	50	41	0	1	55	1.15
43420074--43420131	23	2.5	23	91	0	98	46	1	3	48	1.29
43420059--43420191	12	11.2	12	72	18	91	39	0	1	57	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43420112--43420185	34	2.2	33	88	4	105	39	0	0	60	0.97
43420119--43420195	40	1.9	39	94	2	136	37	0	0	62	0.96
43420134--43420224	40	2.2	40	82	5	103	35	3	2	59	1.26
43420231--43420336	34	3.4	31	79	13	87	32	2	1	63	1.20
43420226--43420273	20	2.4	20	86	6	62	29	6	0	64	1.18
43420219--43420291	3	25.3	3	70	22	50	30	4	0	65	1.11
43420266--43420366	29	3.4	28	76	11	87	33	0	2	62	1.17
43420318--43420400	29	2.7	30	88	7	114	34	2	3	59	1.28
43420472--43420512	20	2.1	20	86	4	57	24	4	4	65	1.32
43425412--43425479	25	2.9	24	78	10	70	47	0	1	51	1.09
43430561--43430634	31	2.4	31	90	4	114	48	16	4	31	1.64
43431847--43431878	15	2.0	17	88	11	50	37	0	9	53	1.34
43432468--43432523	22	2.5	23	82	8	62	48	3	1	46	1.30
43433293--43433337	21	2.1	21	87	0	63	75	15	0	8	1.03
43441672--43441700	9	3.0	10	90	10	51	48	0	0	51	1.00
43450630--43451148	258	2.0	257	90	0	804	37	13	10	38	1.79
43451305--43451347	15	2.7	17	79	17	56	32	2	0	65	1.06
43459441--43459471	14	2.2	14	94	0	53	54	0	3	41	1.16
43469928--43469972	6	7.5	6	100	0	90	51	15	0	33	1.44
43469930--43470008	24	3.3	24	87	0	104	50	21	0	27	1.49
43469966--43470012	4	11.8	4	95	0	85	51	25	0	23	1.49
43479578--43479619	16	2.7	16	81	3	50	54	2	7	35	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43481896--43481969	27	2.7	27	89	0	103	18	31	29	20	1.97
43483158--43483203	14	3.2	14	80	20	51	32	0	2	65	1.05
43483155--43483206	25	2.1	25	82	7	61	32	0	1	65	1.04
43483322--43483386	27	2.4	26	80	7	76	15	21	36	26	1.93
43484004--43484054	24	2.1	24	100	0	102	31	23	11	33	1.91
43486309--43486358	26	1.9	26	87	0	73	30	0	12	58	1.34
43488884--43488931	17	2.8	17	87	6	62	58	2	2	37	1.22
43505092--43505135	19	2.3	19	84	7	54	4	22	2	70	1.17
43506623--43506658	17	2.1	18	94	5	65	38	0	8	52	1.32
43511188--43511237	24	2.0	25	84	3	66	40	26	10	24	1.86
43513849--43513878	6	5.0	6	95	0	51	3	16	13	66	1.37
43515724--43515762	5	7.8	5	83	11	53	23	2	0	74	0.94
43520464--43520488	2	12.5	2	100	0	50	52	0	0	48	1.00
43520813--43520860	22	2.0	24	84	11	64	37	0	0	62	0.95
43523290--43523386	31	3.1	31	83	0	131	43	12	10	34	1.76
43530304--43530372	34	2.0	34	86	5	95	34	4	7	53	1.48
43530347--43530381	17	2.1	17	88	0	52	45	2	0	51	1.16
43530380--43530422	19	2.3	19	80	19	54	55	11	9	23	1.64
43532278--43532418	29	4.9	29	78	12	146	39	26	2	31	1.68
43532277--43532434	58	2.7	59	84	5	198	39	27	1	31	1.68
43532279--43532459	58	3.1	58	79	9	156	37	25	4	32	1.76
43546365--43546462	50	2.0	50	89	0	151	31	17	14	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43548051--43548309	39	6.7	39	83	5	262	23	14	20	41	1.89
43548074--43548309	78	3.1	78	85	3	325	23	14	20	40	1.90
43548074--43548309	117	2.0	115	87	1	337	23	14	20	40	1.90
43553428--43553461	4	8.8	4	90	6	52	82	0	17	0	0.67
43553427--43553463	12	3.2	12	88	3	58	83	0	16	0	0.64
43556714--43556795	23	3.7	22	70	6	67	48	2	6	42	1.41
43556708--43556812	43	2.4	44	78	9	124	48	1	4	44	1.34
43562414--43562472	24	2.5	24	82	0	73	52	10	13	23	1.71
43562430--43562476	24	2.0	24	91	0	76	59	6	12	21	1.55
43566086--43566183	50	2.0	50	89	0	151	31	17	14	36	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193