genome.fa.s4.2.7.7.80.10.50.1000.64.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  64  of  193  ( 23090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20565815--20566231	43	9.7	43	85	4	454	18	29	25	26	1.98
20565815--20566231	86	4.9	87	87	4	535	18	29	25	26	1.98
20565791--20566231	129	3.4	129	87	2	591	20	29	24	25	1.99
20566559--20566706	66	2.2	66	86	4	210	16	22	15	45	1.85
20572131--20572581	48	9.1	48	72	16	307	44	5	2	47	1.41
20572166--20572248	18	5.0	18	71	20	65	42	3	1	53	1.26
20572375--20572553	18	10.9	18	65	20	79	44	5	1	49	1.34
20572115--20573268	256	4.6	257	79	12	1063	45	6	1	46	1.37
20572136--20573194	49	20.9	49	77	13	628	45	6	1	46	1.37
20572401--20573045	97	6.7	96	72	16	315	46	5	1	46	1.34
20572631--20572826	18	11.8	18	69	19	104	45	4	0	49	1.26
20572653--20572760	31	3.3	31	78	12	108	47	1	0	50	1.11
20572815--20573225	23	15.4	29	65	28	177	45	7	0	46	1.31
20572769--20573095	79	4.1	80	90	4	486	45	7	0	46	1.31
20572895--20572965	30	2.3	31	97	2	135	47	5	0	46	1.26
20572486--20573281	81	10.3	79	75	15	444	45	6	0	46	1.36
20572696--20573268	130	4.5	129	92	4	917	45	7	0	47	1.30
20573173--20573268	49	1.9	50	91	2	158	44	9	0	45	1.36
20573318--20573369	18	2.8	18	79	2	68	50	0	1	48	1.12
20577821--20578388	41	13.8	41	76	7	384	23	25	25	25	2.00
20577878--20578329	41	10.9	41	78	6	392	24	26	25	23	2.00
20577821--20578329	82	6.1	82	77	6	429	23	26	25	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20578212--20578409	40	4.9	41	80	7	158	20	26	24	28	1.99
20586030--20586090	30	2.1	28	84	6	77	55	9	19	14	1.67
20587499--20587524	12	2.2	12	100	0	52	34	7	15	42	1.75
20597558--20597606	10	4.5	11	80	14	57	81	0	16	2	0.78
20597557--20597605	25	2.0	25	84	4	64	79	0	18	2	0.83
20599668--20599823	25	6.2	25	77	5	125	33	28	12	25	1.92
20613415--20613467	19	2.8	18	77	8	61	66	3	13	16	1.39
20622870--20622904	12	2.9	12	91	0	52	17	5	0	77	0.96
20622870--20622904	17	2.1	17	89	10	54	17	5	0	77	0.96
20624843--20624879	19	1.9	19	88	0	56	18	8	43	29	1.79
20642429--20642474	2	23.0	2	100	0	92	50	0	0	50	1.00
20646772--20646833	28	2.3	25	79	17	63	20	14	8	56	1.64
20650649--20650705	11	4.9	11	79	12	69	40	0	0	59	0.97
20650626--20650731	36	3.0	36	85	10	123	47	0	0	52	1.00
20650688--20650738	25	2.0	25	82	14	61	52	0	0	47	1.00
20650911--20650936	10	2.6	10	100	0	52	19	0	0	80	0.71
20657466--20657503	19	2.0	20	90	10	62	42	0	0	57	0.98
20657675--20657729	11	4.8	11	73	20	51	61	3	1	32	1.24
20658003--20658033	2	16.0	2	93	6	55	48	0	0	51	1.00
20667768--20667802	12	2.9	12	82	0	52	42	37	8	11	1.72
20669292--20669340	22	2.2	22	85	0	62	40	42	4	12	1.61
20674053--20674120	25	2.7	25	100	0	136	61	7	11	19	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20697427--20697486	23	2.6	23	84	5	77	28	25	0	46	1.53
20702792--20703819	93	11.0	91	73	12	657	35	17	19	27	1.94
20702792--20703806	186	5.5	186	85	2	1216	35	17	20	27	1.94
20704082--20704127	21	2.2	21	88	3	67	80	8	0	10	0.91
20705767--20705822	22	2.6	22	76	15	64	21	8	0	69	1.15
20710677--20710719	9	4.8	9	79	0	50	30	2	4	62	1.28
20711253--20711291	20	2.0	20	85	10	53	53	0	0	46	1.00
20719168--20719194	1	27.0	1	100	0	54	0	100	0	0	0.00
20729154--20729239	24	3.6	24	90	0	136	23	24	23	29	1.99
20731768--20731821	24	2.3	23	84	6	65	40	11	7	40	1.69
20740474--20740535	14	4.4	14	84	8	81	24	17	24	33	1.96
20740482--20740548	28	2.9	21	71	26	62	23	16	23	35	1.95
20740537--20740573	19	1.9	19	88	0	56	13	18	21	45	1.84
20747298--20747337	5	8.0	5	100	0	80	80	0	20	0	0.72
20749547--20749575	14	2.0	15	93	6	51	0	41	0	58	0.98
20753881--20753907	10	2.7	10	100	0	54	0	33	18	48	1.49
20768725--20768761	15	2.5	15	90	0	56	43	10	29	16	1.82
20789317--20789357	17	2.4	17	80	19	50	46	14	21	17	1.84
20799359--20799517	82	1.9	82	97	0	300	24	18	16	40	1.91
20801680--20801712	15	2.1	16	88	5	50	12	21	3	63	1.41
20806378--20806533	82	1.9	82	94	0	276	24	18	16	41	1.90
20809722--20809755	11	3.1	11	95	0	59	29	14	8	47	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20814573--20814600	13	2.2	13	100	0	56	53	0	7	39	1.28
20814685--20815039	138	2.6	133	85	6	464	45	5	8	41	1.56
20834614--20834649	16	2.3	15	90	4	54	0	19	0	80	0.71
20838627--20839730	367	3.0	367	98	0	2118	37	17	16	28	1.92
20842370--20842415	22	2.0	24	87	8	69	45	6	6	41	1.56
20849573--20849612	12	3.2	12	89	3	53	10	20	2	67	1.31
20851821--20851994	51	3.4	50	83	3	197	37	12	10	38	1.79
20857413--20857453	21	2.0	21	85	0	55	34	4	4	56	1.42
20860869--20860914	23	1.9	25	91	8	78	36	41	0	21	1.54
20864605--20864644	15	2.7	15	96	0	71	35	30	12	22	1.91
20866915--20866952	19	2.0	19	94	0	67	28	5	26	39	1.78
20868114--20868167	25	2.2	24	81	12	58	42	40	1	14	1.57
20868314--20868373	28	2.1	28	87	0	84	18	18	25	38	1.93
20868320--20868375	14	4.0	14	72	9	51	17	19	25	37	1.94
20881498--20881554	22	2.5	23	80	11	64	42	10	3	43	1.56
20882447--20882489	17	2.5	17	88	3	59	53	2	23	20	1.57
20887760--20887801	17	2.4	17	88	4	57	47	2	28	21	1.63
20888393--20888517	40	3.1	40	85	4	171	39	20	17	23	1.92
20894410--20894446	18	2.0	19	89	5	58	40	18	0	40	1.51
20898737--20898792	21	2.5	22	78	16	62	21	7	17	53	1.67
20898751--20898791	21	2.0	21	90	9	66	19	4	19	56	1.60
20898955--20898995	20	2.0	20	90	0	64	26	7	21	43	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20900633--20900725	28	3.3	28	68	19	75	36	19	17	26	1.94
20904000--20904044	4	11.5	4	90	4	74	26	22	0	51	1.49
20918432--20918486	18	3.1	18	75	0	56	36	27	10	25	1.89
20932390--20932439	12	4.2	12	77	10	57	62	0	36	2	1.07
20936506--20936541	18	1.9	19	94	5	65	52	16	5	25	1.65
20937605--20937673	21	3.3	21	87	2	95	11	24	8	55	1.64
20942567--20942898	23	14.4	23	88	0	475	32	6	13	47	1.68
20942571--20942898	115	2.9	115	94	0	557	32	6	13	47	1.68
20955641--20955682	5	8.4	5	94	0	75	59	2	0	38	1.10
20955658--20955758	42	2.5	39	81	9	121	53	5	1	38	1.37
20955665--20955752	42	2.1	42	86	0	122	52	5	2	39	1.38
20966247--20966300	18	3.1	17	83	5	54	22	11	9	57	1.61
20966248--20966300	17	3.1	18	81	8	65	22	11	9	56	1.63
20969465--20969627	43	3.8	43	85	3	186	28	23	10	38	1.88
20972522--20972579	27	2.1	27	100	0	116	25	18	15	39	1.91
20973812--20973852	21	2.0	20	86	9	57	39	19	9	31	1.84
20983734--20984201	155	3.0	155	98	0	909	30	30	8	30	1.87
20985476--20985620	63	2.3	63	86	0	218	26	49	3	20	1.64
20985580--20985657	39	2.0	39	82	0	93	21	55	2	20	1.56
20985720--20985773	6	9.0	6	84	8	74	20	62	0	16	1.32
20987423--20987471	23	2.1	23	88	7	73	46	22	2	28	1.63
20987438--20987503	32	2.1	32	86	5	91	46	22	3	27	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20988263--20988301	14	2.9	13	88	11	53	61	0	2	35	1.10
20988262--20988335	20	3.6	19	72	13	58	52	4	4	39	1.39
20988391--20988430	2	19.5	2	94	5	71	50	0	2	47	1.14
20988505--20988538	14	2.4	14	90	0	50	61	0	2	35	1.11
20988332--20988870	232	2.4	227	82	7	614	46	7	9	37	1.63
20988616--20988662	18	2.6	18	77	12	51	48	4	4	42	1.42
20989723--20989769	23	2.1	22	84	4	58	19	4	6	70	1.26
20990104--20990155	19	2.9	17	80	11	59	76	1	9	11	1.09
20990097--20990158	18	3.5	18	79	16	76	75	1	12	9	1.11
21007262--21007327	33	2.0	33	91	5	107	34	24	4	36	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193