genome.fa.s4.2.7.7.80.10.50.1000.185.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  185  of  193  ( 23090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57636375--57636510	29	4.6	29	70	17	102	31	27	2	37	1.72
57636368--57636762	59	6.7	59	78	8	335	31	26	3	38	1.74
57636388--57636496	29	3.8	29	74	12	107	31	26	2	39	1.70
57636388--57636547	29	5.5	28	69	19	96	30	28	3	38	1.72
57636368--57636762	117	3.4	113	77	10	341	31	26	3	38	1.74
57636652--57636742	29	3.1	29	69	17	80	37	24	1	37	1.63
57636490--57636782	58	5.0	57	78	6	169	32	25	4	38	1.76
57648895--57649614	199	3.6	200	93	1	1171	35	21	22	19	1.96
57649998--57650039	17	2.5	17	84	0	57	54	4	0	40	1.21
57650433--57650526	27	3.5	27	77	9	86	47	21	9	21	1.78
57651894--57652113	29	7.5	29	69	16	114	34	27	1	36	1.66
57651903--57652152	59	4.2	59	83	4	281	34	26	1	37	1.66
57651959--57652052	30	3.2	29	73	14	93	36	26	1	36	1.64
57651989--57652092	30	3.5	31	70	20	96	33	27	1	36	1.68
57651940--57652180	59	4.1	59	79	9	174	34	25	2	37	1.69
57655014--57655195	80	2.3	80	100	0	364	33	8	13	44	1.74
57659728--57659767	19	2.2	18	86	4	53	35	7	2	55	1.42
57663669--57663701	17	2.0	17	88	5	50	54	3	3	39	1.31
57683888--57683942	24	2.3	25	78	9	69	58	5	1	34	1.32
57700944--57700999	16	3.9	15	82	11	64	35	0	0	64	0.94
57702844--57702927	42	2.0	42	90	4	134	34	0	17	47	1.48
57703105--57703169	13	4.4	14	75	21	53	46	9	10	33	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57703120--57703175	18	3.4	18	68	31	61	44	8	12	33	1.73
57703113--57703190	31	2.5	31	89	0	120	46	11	11	30	1.76
57705299--57705398	39	2.6	39	80	6	123	33	20	18	29	1.96
57705593--57705633	20	2.2	18	86	8	55	46	0	19	34	1.50
57708968--57708995	6	4.7	6	100	0	56	35	46	0	17	1.49
57710333--57710375	14	3.0	14	82	3	50	39	9	18	32	1.83
57710591--57710624	15	2.2	16	89	5	52	26	2	2	67	1.19
57710645--57710697	19	2.7	20	82	14	65	35	1	5	56	1.34
57716878--57717002	23	5.4	23	87	1	153	44	21	22	11	1.83
57716880--57717002	46	2.7	46	85	2	176	43	21	22	11	1.84
57716834--57716978	69	2.1	66	83	10	175	43	20	23	12	1.86
57724256--57724439	37	5.0	37	82	0	215	30	32	21	15	1.94
57724256--57724439	74	2.5	74	88	0	278	30	32	21	15	1.94
57726864--57726964	38	2.6	40	71	10	100	21	19	28	29	1.98
57735817--57735850	1	34.0	1	100	0	68	0	0	100	0	0.00
57742934--57743032	41	2.5	39	72	8	94	31	28	19	21	1.97
57757048--57757112	22	2.9	22	78	13	69	32	0	6	61	1.21
57765860--57765927	26	2.5	27	80	4	66	60	8	2	27	1.41
57778626--57778685	31	2.0	31	86	3	86	40	0	13	46	1.43
57779063--57779110	25	2.0	25	87	4	71	29	6	4	60	1.40
57785149--57785239	46	2.0	46	93	0	155	35	19	14	30	1.92
57786690--57786724	18	1.9	18	100	0	70	17	37	0	45	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57786986--57787025	16	2.6	16	88	7	57	37	37	2	22	1.68
57787096--57787149	24	2.2	24	86	0	81	29	29	18	22	1.97
57787171--57787238	7	9.7	7	72	0	55	22	20	20	36	1.95
57787151--57787224	21	3.5	21	85	5	87	24	18	21	35	1.96
57787198--57787239	14	3.0	14	96	0	75	21	19	21	38	1.94
57790361--57790431	3	23.3	3	79	2	79	67	5	2	23	1.25
57790507--57790548	19	2.4	17	84	15	50	30	0	2	66	1.04
57790502--57790558	28	2.0	29	86	10	82	31	0	1	66	1.02
57790494--57790564	10	7.2	10	78	12	67	29	0	4	66	1.11
57799187--57799266	31	2.6	31	77	0	88	45	6	11	37	1.65
57799311--57799355	22	2.0	22	83	8	56	46	2	4	46	1.35
57807988--57808016	15	1.9	15	100	0	58	68	3	0	27	1.05
57822286--57822411	61	2.1	61	81	0	144	46	15	2	35	1.58
57825055--57825095	21	2.0	21	90	0	64	14	53	7	24	1.66
57828529--57828611	21	3.9	21	79	4	85	10	7	15	66	1.43
57828607--57828647	12	3.4	12	89	0	64	9	4	12	73	1.24
57828596--57828647	24	2.2	24	85	0	68	7	5	17	69	1.33
57828616--57828733	12	10.2	12	70	7	91	8	3	16	71	1.25
57828605--57828689	24	3.5	24	83	0	98	9	3	15	71	1.25
57828646--57828730	32	2.6	32	83	7	91	8	3	17	70	1.26
57828673--57828756	44	2.0	42	85	4	114	8	3	21	66	1.34
57828694--57828755	20	2.9	21	76	11	63	9	4	20	64	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57831323--57831515	96	2.0	96	91	0	314	33	17	28	20	1.95
57834915--57834975	28	2.1	29	85	8	81	29	8	27	34	1.86
57834913--57835039	29	4.3	30	72	14	95	32	6	27	33	1.82
57834925--57835098	29	5.9	29	70	18	92	34	5	27	33	1.79
57834961--57835098	29	4.7	29	72	16	97	36	3	24	34	1.73
57834962--57835240	58	4.7	57	74	9	213	38	3	23	34	1.72
57835159--57835348	29	6.4	29	71	17	83	37	1	24	36	1.65
57835051--57835348	117	2.5	116	82	10	333	39	2	23	34	1.69
57835110--57835348	59	4.1	57	74	15	195	38	2	23	35	1.67
57837150--57837220	17	4.2	17	83	0	79	52	2	1	43	1.24
57837821--57837855	17	2.0	17	94	5	61	62	0	0	37	0.95
57838150--57838190	22	1.9	22	85	5	57	53	12	2	31	1.51
57840664--57840823	59	2.7	59	82	7	191	35	3	27	33	1.75
57840789--57840852	29	2.2	29	83	5	76	32	0	26	40	1.56
57844478--57844509	16	2.0	16	100	0	64	37	25	6	31	1.81
57846379--57846436	28	2.1	27	87	6	82	51	0	6	41	1.28
57846722--57846754	2	16.5	2	100	0	66	0	48	0	51	1.00
57849001--57849032	2	16.0	2	100	0	64	50	0	0	50	1.00
57849272--57849316	15	2.7	17	90	10	67	71	0	0	28	0.87
57849503--57849540	19	2.1	19	90	5	60	55	7	2	34	1.43
57856905--57856942	18	2.2	18	85	4	51	71	13	2	13	1.26
57856905--57856955	17	2.9	17	77	11	50	70	15	1	11	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57858463--57858529	32	2.1	32	94	0	116	37	5	20	35	1.78
57870942--57870975	16	2.2	15	89	5	50	88	0	11	0	0.52
57891625--57891671	23	2.0	23	91	0	76	27	23	6	42	1.78
57895393--57895422	13	2.4	13	94	5	53	23	0	16	60	1.36
57896080--57896112	15	2.3	15	89	5	50	21	6	18	54	1.64
57897097--57897147	26	2.0	26	88	0	75	29	13	7	49	1.70
57898336--57898385	24	2.1	24	88	0	73	36	6	4	54	1.44
57898623--57898691	22	3.2	22	84	13	83	36	1	0	62	1.04
57909537--57909565	15	1.9	15	100	0	58	55	0	0	44	0.99
57911420--57911461	13	2.9	14	80	13	50	54	0	0	45	0.99
57911424--57911460	16	2.3	16	86	13	58	59	0	0	40	0.97
57923609--57923650	1	42.0	1	95	0	75	2	97	0	0	0.16
57934178--57934236	29	2.0	29	93	6	102	28	5	6	59	1.45
57934726--57934771	12	3.5	13	85	8	58	71	0	23	4	1.03
57948348--57948406	29	2.0	29	90	6	93	35	23	18	22	1.96
57959174--57959218	23	2.0	23	86	0	63	31	13	20	35	1.91
57959458--57959541	42	2.0	42	90	4	134	47	22	0	29	1.52
57960806--57960880	23	3.3	23	81	7	75	41	18	21	18	1.91
57962678--57962890	112	1.9	112	85	3	295	30	14	14	40	1.86
57967881--57967915	14	2.5	15	86	13	56	42	0	20	37	1.52
57975831--57975907	30	2.5	32	75	12	81	24	7	2	64	1.33
57976383--57976424	20	2.1	20	90	0	66	23	28	40	7	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57983075--57983120	17	2.7	18	80	16	53	36	0	0	63	0.95
57983428--57983472	21	2.1	21	95	0	81	44	15	35	4	1.67
57983477--57983526	14	3.6	14	70	20	50	30	6	0	64	1.18
57984627--57985424	413	1.9	413	88	1	1206	31	18	13	36	1.90
57987292--57987317	13	2.0	13	100	0	52	69	7	0	23	1.14
57987330--57987371	19	2.2	20	91	4	68	59	7	2	30	1.37
57992198--57993780	672	2.4	667	95	1	2868	30	12	18	39	1.87
57993636--57993913	134	2.1	134	98	0	540	27	15	10	46	1.78
57995119--57995397	134	2.1	135	98	1	544	26	15	10	46	1.78
57994451--57996080	818	2.0	801	91	3	2669	29	12	17	40	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193