genome.fa.s4.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  37  of  193  ( 23090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11358268--11358366	39	2.5	40	80	3	128	31	19	20	29	1.97
11363196--11363294	39	2.5	40	90	3	155	30	20	20	29	1.97
11363958--11363985	14	2.0	14	100	0	56	50	0	7	42	1.30
11364488--11364525	19	2.0	19	85	10	51	34	0	5	60	1.19
11370185--11370216	4	8.0	4	100	0	64	50	25	0	25	1.50
11375155--11375207	27	2.0	27	96	0	97	32	16	16	33	1.92
11375211--11375296	24	3.6	24	87	0	118	23	24	25	26	2.00
11375211--11375309	48	2.1	48	84	0	126	24	22	25	28	1.99
11378730--11378764	2	17.5	2	87	0	52	0	48	2	48	1.16
11387438--11387494	27	2.1	27	83	0	69	21	21	14	43	1.87
11388764--11388831	31	2.3	29	85	7	93	57	2	8	30	1.44
11397979--11398007	8	3.6	8	100	0	58	51	0	13	34	1.42
11407517--11407554	2	19.0	2	100	0	76	50	0	0	50	1.00
11412234--11412283	8	6.2	8	81	9	57	40	2	2	56	1.22
11412234--11412299	32	2.1	32	85	0	87	36	6	3	54	1.41
11417564--11417619	26	2.2	26	83	3	69	28	16	12	42	1.84
11420305--11420350	15	2.9	17	73	26	55	63	0	0	36	0.95
11426884--11426992	51	2.1	52	86	1	148	46	6	16	30	1.72
11429034--11429087	19	2.8	19	85	2	72	35	20	35	9	1.85
11429033--11429092	20	3.0	20	80	4	77	33	21	33	11	1.90
11431509--11431606	49	2.0	49	100	0	196	36	18	8	36	1.81
11435423--11435469	23	2.0	23	83	0	58	38	12	10	38	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11442484--11442548	29	2.2	29	83	2	76	40	13	4	41	1.66
11442529--11442645	30	3.9	30	79	7	98	39	20	3	36	1.70
11442542--11442678	30	4.6	30	80	9	154	40	20	5	33	1.76
11442523--11442675	60	2.5	60	87	4	184	37	20	5	35	1.76
11442542--11442678	60	2.3	61	92	2	224	40	20	5	33	1.76
11448233--11448393	23	6.9	23	82	6	157	10	25	23	40	1.86
11452449--11452723	128	2.1	128	78	2	293	21	22	32	24	1.98
11463606--11463670	32	2.0	32	96	0	121	35	6	6	52	1.51
11469433--11469736	26	11.7	26	80	7	287	31	17	25	25	1.97
11476759--11476928	26	6.5	27	76	11	158	31	16	27	24	1.96
11476759--11476928	78	2.2	78	86	4	227	31	16	27	24	1.96
11478588--11478620	15	2.1	17	88	11	52	63	0	3	33	1.10
11491712--11491742	15	2.1	15	93	0	53	35	12	9	41	1.76
11495395--11495425	16	1.9	16	93	0	53	48	16	6	29	1.70
11495450--11495494	23	2.0	23	86	8	65	48	11	15	24	1.77
11495612--11495833	111	2.0	111	100	0	444	40	19	13	26	1.89
11496389--11496920	61	8.8	59	79	7	513	28	18	16	37	1.92
11496389--11496871	119	4.0	117	85	7	546	27	18	16	37	1.92
11499138--11499201	32	2.0	31	93	3	110	60	4	14	20	1.51
11499168--11499218	26	2.0	26	100	0	102	54	3	19	21	1.60
11501198--11501380	55	3.3	56	82	8	214	27	8	14	48	1.73
11505571--11505638	27	2.6	26	79	11	68	61	1	1	35	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11505658--11505716	10	6.4	9	75	11	50	72	1	3	22	1.08
11505655--11505717	9	7.1	8	76	15	54	69	1	3	25	1.12
11505988--11506042	20	2.9	19	74	17	60	38	3	1	56	1.28
11506000--11506033	18	1.9	18	88	5	52	32	5	2	58	1.37
11506867--11506931	30	2.1	30	83	8	78	49	0	3	47	1.17
11507085--11507209	9	13.0	9	71	18	92	32	1	1	64	1.12
11507085--11507209	19	6.5	19	75	9	110	32	1	1	64	1.12
11507085--11507221	10	14.0	10	75	12	99	30	2	1	65	1.13
11507576--11507780	85	2.4	85	79	6	202	38	7	15	39	1.76
11507997--11508032	19	1.9	18	88	5	54	38	2	0	58	1.13
11513432--11513486	29	1.9	30	89	10	89	41	7	0	50	1.30
11520354--11521000	320	2.0	320	91	1	1046	37	18	16	28	1.92
11526166--11526234	31	2.2	31	82	12	79	49	11	17	21	1.78
11530335--11530379	22	2.0	22	100	0	90	15	13	8	62	1.54
11531063--11531099	9	4.0	9	89	3	56	21	0	8	70	1.13
11531114--11531155	17	2.5	17	84	0	57	30	0	4	64	1.14
11531123--11531161	17	2.2	18	86	9	53	28	0	2	69	1.02
11534501--11534537	20	1.9	20	88	5	58	54	8	5	32	1.53
11535385--11535427	16	2.6	18	75	17	56	37	34	2	25	1.69
11541360--11541389	7	4.3	7	91	0	51	50	0	0	50	1.00
11541895--11541972	25	3.2	25	68	23	67	38	10	7	43	1.67
11549187--11549256	25	2.7	26	84	4	88	40	2	8	48	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11549187--11549261	26	2.9	26	86	4	98	40	2	8	49	1.46
11549216--11549272	5	10.8	5	81	9	53	40	1	3	54	1.28
11549216--11549274	26	2.2	26	87	3	82	40	1	5	52	1.33
11553681--11553739	18	3.3	18	79	11	68	54	1	0	44	1.10
11571197--11571230	12	2.9	12	91	4	52	47	14	29	8	1.75
11575956--11576026	16	4.7	15	71	23	51	32	7	1	59	1.33
11592990--11593035	21	2.2	21	88	11	69	32	0	19	47	1.50
11593252--11593302	18	2.7	19	82	14	61	33	1	1	62	1.17
11593376--11593405	15	2.1	15	93	6	53	13	0	3	83	0.77
11593403--11593447	21	2.1	22	83	4	56	37	2	2	57	1.23
11593028--11593739	139	5.0	143	87	6	1008	36	4	5	54	1.43
11593028--11593739	284	2.5	278	89	5	1058	36	4	5	54	1.43
11594147--11594184	20	1.9	20	100	0	76	0	21	21	57	1.40
11594457--11594487	15	2.1	15	93	0	53	29	6	16	48	1.70
11597072--11597176	43	2.5	43	90	1	158	43	11	11	33	1.77
11598698--11598732	3	11.7	3	93	0	61	34	28	2	34	1.72
11598793--11598831	12	3.4	11	82	10	51	2	33	0	64	1.08
11605114--11605162	11	4.5	11	87	7	64	79	0	20	0	0.73
11605111--11605178	16	4.5	16	79	17	74	79	0	20	0	0.73
11605115--11605177	27	2.4	27	89	7	94	77	0	22	0	0.76
11606038--11606081	11	4.0	11	79	8	54	84	0	15	0	0.63
11606039--11606078	20	2.0	20	90	5	62	85	0	15	0	0.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11606342--11606599	106	2.4	108	85	6	335	29	19	12	37	1.89
11606983--11607369	49	7.9	49	74	5	208	36	15	27	20	1.93
11606984--11607416	98	4.4	98	86	2	514	35	15	27	20	1.94
11607023--11607416	196	2.0	196	88	3	580	35	15	28	20	1.94
11607033--11607396	49	7.4	49	73	7	290	35	16	28	20	1.94
11607532--11607995	82	5.8	82	81	7	535	31	26	17	24	1.97
11607532--11608018	124	4.0	121	81	9	518	31	25	18	24	1.97
11607532--11607995	42	11.6	41	80	9	487	31	26	17	24	1.97
11607889--11608017	38	3.3	38	76	8	152	31	22	20	24	1.98
11611460--11611491	15	2.1	16	88	11	50	40	0	9	50	1.35
11612362--11612409	16	3.1	15	73	8	51	27	0	2	70	0.98
11626387--11626429	11	3.8	12	82	14	56	20	20	27	30	1.98
11626398--11626472	11	6.8	11	75	6	62	21	28	25	25	1.99
11626409--11626471	22	2.9	22	82	0	72	22	30	23	23	1.99
11626384--11626448	33	2.0	33	87	0	94	21	26	26	26	2.00
11636719--11636751	13	2.6	13	85	4	50	57	12	0	30	1.35
11636935--11636959	2	12.5	2	100	0	50	52	0	0	48	1.00
11638527--11638590	31	2.2	27	79	15	74	43	7	7	40	1.62
11644261--11644346	30	2.8	30	81	8	77	37	8	3	51	1.49
11644421--11644480	28	2.3	26	83	11	77	43	0	23	33	1.54
11648603--11648628	7	3.7	7	100	0	52	46	0	0	53	1.00
11648694--11648731	20	1.9	20	84	10	51	60	15	0	23	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11652337--11652458	24	5.1	24	91	0	199	25	23	25	25	2.00
11673759--11673807	26	1.9	26	83	4	64	26	6	8	59	1.50
11673807--11673848	19	2.2	19	87	8	59	42	2	7	47	1.43
11675260--11675334	31	2.5	31	86	2	107	48	1	0	50	1.09
11680483--11680555	20	3.7	20	83	0	83	32	16	16	34	1.91
11686253--11686456	57	3.6	55	75	14	175	32	1	27	37	1.68
11686253--11686456	28	7.1	27	80	10	178	32	1	27	37	1.68
11687071--11687101	15	2.1	15	93	0	53	22	19	32	25	1.97
11687991--11688031	22	1.9	21	85	5	55	51	4	9	34	1.56
11688274--11688460	86	2.2	87	82	4	220	43	16	6	33	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193