Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  193  of  193  ( 23090 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60237415--60237449
16
2.1
17
89
5
54
71
2
0
25
1.00
60265127--60265290
68
2.7
63
80
17
188
42
1
2
54
1.21
60270320--60270374
6
9.0
6
77
15
51
78
0
21
0
0.76
60270298--60270373
9
8.6
9
72
13
52
80
1
15
2
0.90
60270317--60270374
26
2.4
25
83
16
77
79
0
20
0
0.74
60270299--60270373
14
5.4
14
75
9
73
80
1
16
2
0.90
60271284--60271423
50
2.8
50
86
0
190
35
19
22
22
1.96
60271297--60271442
50
2.9
50
86
0
157
35
17
23
22
1.95
60271549--60272076
80
6.6
80
90
1
776
33
21
17
27
1.96
60276229--60276312
9
9.1
9
71
14
55
42
1
2
53
1.21
60283375--60283411
17
2.1
19
90
10
60
64
0
0
35
0.94
60289044--60289071
14
2.0
14
100
0
56
21
0
21
57
1.41
60300368--60300428
6
9.7
6
76
16
61
81
0
18
0
0.68
60300369--60300430
19
3.3
19
86
2
90
79
0
20
0
0.74
60301352--60301516
50
3.3
50
86
0
213
37
16
23
22
1.93
60301585--60302075
80
6.2
80
91
1
763
32
23
17
26
1.97
60303785--60303826
15
2.6
17
82
14
54
59
0
4
35
1.19
60303802--60303853
18
2.9
18
77
2
52
57
1
9
30
1.42
60303836--60303880
14
3.2
13
82
14
54
60
2
6
31
1.35
60304451--60304530
28
2.9
27
75
5
79
40
1
7
51
1.38
60305162--60305187
2
13.0
2
100
0
52
50
0
0
50
1.00
60306014--60306253
30
8.0
30
82
4
227
38
23
2
35
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60306019--60306245
90
2.5
90
82
6
291
38
22
2
35
1.69
60306019--60306253
60
3.9
59
80
5
274
38
23
2
35
1.69
60306158--60306278
30
4.1
30
81
9
101
37
28
0
33
1.63
60306635--60306670
18
2.0
18
100
0
72
16
16
16
50
1.79
60308144--60308249
37
2.8
38
88
7
153
32
6
19
41
1.77
60310705--60310793
41
2.1
42
85
6
119
25
26
11
35
1.90
60314899--60314939
21
2.0
20
85
9
55
60
2
7
29
1.36
60317375--60317412
20
1.9
20
84
10
51
52
2
0
44
1.14
60326792--60326836
21
2.1
22
84
12
58
64
4
0
31
1.13
60333265--60333403
43
3.1
43
76
7
136
25
18
28
27
1.98
60333349--60333457
55
2.0
55
92
0
182
29
17
23
29
1.97
60336071--60336106
16
2.2
16
90
0
54
36
2
0
61
1.11
60349576--60349659
40
2.1
40
95
0
150
48
3
5
41
1.45
60350304--60350351
24
2.0
24
100
0
96
29
20
4
45
1.70
60352525--60352617
7
13.1
7
90
1
96
8
0
46
45
1.34
60352498--60352612
14
8.1
14
78
10
94
12
0
41
46
1.41
60354241--60354380
62
2.3
59
91
3
217
35
5
30
30
1.79
60354362--60354677
30
10.6
30
90
1
476
34
2
24
38
1.70
60354362--60354677
119
2.7
118
91
3
499
34
2
24
38
1.70
60354477--60354531
19
3.3
19
63
36
54
29
3
27
40
1.73
60355248--60355300
23
2.3
23
96
0
97
0
26
45
28
1.54
60355386--60355448
15
4.3
15
77
16
60
1
25
1
71
1.04
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60356250--60356289
20
2.0
21
90
5
64
17
17
45
20
1.86
60356448--60356549
6
17.0
6
74
14
77
48
1
0
50
1.12
60356485--60356534
25
2.0
25
88
0
73
54
4
0
42
1.19
60356459--60356549
42
2.2
42
82
5
105
50
2
0
47
1.13
60356478--60356541
31
2.1
31
91
5
103
53
3
0
43
1.16
60356479--60356549
17
4.4
16
79
16
85
54
2
0
42
1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193

The End!