genome.fa.s4.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  142  of  193  ( 23090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44372676--44372733	28	2.1	28	100	0	116	22	17	6	53	1.67
44374497--44374559	31	2.0	31	81	6	74	50	11	6	31	1.63
44376480--44376555	10	7.8	10	77	18	72	47	0	2	50	1.15
44376475--44376557	29	2.9	29	79	15	91	46	1	2	49	1.22
44376455--44376557	19	5.4	19	70	22	72	44	1	2	50	1.28
44379213--44379265	18	3.1	17	83	5	63	69	0	0	30	0.88
44379213--44379274	17	3.5	17	74	12	54	69	1	0	29	0.98
44379340--44379393	30	1.9	30	85	11	78	31	3	1	62	1.23
44380149--44380219	23	3.1	23	74	8	74	29	5	0	64	1.16
44384524--44384560	17	2.1	17	90	10	56	59	0	0	40	0.97
44385470--44385512	18	2.4	18	88	7	61	46	0	0	53	1.00
44386265--44386429	75	2.2	75	94	3	285	23	16	23	35	1.95
44386467--44386539	9	8.2	9	70	27	50	52	0	0	47	1.00
44386468--44386570	31	3.7	30	79	19	125	50	0	0	48	1.07
44386459--44386541	11	7.9	11	72	20	70	50	0	1	48	1.08
44386499--44386559	20	3.0	20	78	21	72	50	0	0	49	1.00
44386459--44386572	51	2.2	52	90	6	180	50	0	0	47	1.13
44387171--44387195	12	2.1	12	100	0	50	76	24	0	0	0.80
44387174--44387314	72	2.0	72	91	2	230	53	11	32	2	1.48
44387287--44387321	14	2.5	14	85	0	52	42	0	57	0	0.99
44388825--44388884	30	2.0	29	87	9	86	45	3	13	38	1.60
44388825--44388884	29	2.0	30	87	9	88	45	3	13	38	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44388845--44388904	29	2.1	29	84	12	79	36	3	15	45	1.62
44390491--44390569	25	3.2	25	85	1	106	41	18	29	10	1.83
44390491--44390609	25	4.9	24	82	10	100	39	21	27	10	1.87
44390573--44390641	22	3.1	22	89	2	111	39	27	21	11	1.88
44393752--44393789	11	3.5	11	96	0	67	39	34	0	26	1.57
44393983--44394128	31	4.8	31	72	9	113	52	8	13	26	1.68
44400303--44400329	14	1.9	14	100	0	54	14	0	25	59	1.36
44400479--44400509	14	2.2	14	94	0	53	32	16	29	22	1.95
44400583--44400872	14	20.5	14	82	2	319	33	40	15	10	1.82
44412457--44412614	30	5.2	30	79	4	138	34	22	3	39	1.70
44412457--44412626	61	2.8	61	82	5	202	33	24	4	37	1.77
44412511--44412737	30	7.7	29	79	9	176	34	27	5	31	1.80
44412540--44412737	59	3.3	58	81	6	211	33	28	6	31	1.82
44417968--44418047	10	7.6	10	74	22	58	80	3	13	2	0.96
44417942--44418024	31	2.6	32	84	9	107	78	1	13	7	1.01
44417968--44418052	31	2.8	30	81	16	95	80	3	14	2	0.95
44417946--44418050	42	2.5	41	81	10	106	79	2	12	5	1.02
44418966--44419117	49	3.1	49	70	10	132	38	15	25	19	1.92
44419427--44419506	39	2.1	39	92	0	133	27	35	17	20	1.95
44419489--44419600	39	2.9	39	79	2	136	25	31	19	23	1.98
44419617--44420558	208	4.5	207	82	5	1011	37	18	21	21	1.94
44420118--44420284	85	2.0	84	85	3	228	35	17	23	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44422161--44422242	30	2.8	30	84	1	103	36	12	1	50	1.48
44422229--44422397	60	2.8	59	79	7	171	39	23	1	35	1.65
44422180--44422393	30	7.1	30	78	7	150	37	21	1	39	1.64
44422330--44422458	30	4.3	29	76	6	107	34	28	4	31	1.78
44422201--44422416	90	2.4	88	77	12	206	39	20	2	37	1.66
44422410--44422470	29	2.1	29	84	6	79	37	29	6	26	1.81
44425673--44425715	18	2.4	18	88	7	61	46	0	0	53	1.00
44426983--44427021	18	2.0	18	85	14	51	61	0	2	35	1.10
44427017--44427075	26	2.4	24	78	15	66	45	0	1	52	1.10
44427013--44427085	28	2.6	26	72	12	65	47	0	2	49	1.15
44429316--44429387	7	10.6	7	74	5	58	38	23	19	18	1.93
44429322--44429380	20	3.0	20	82	0	73	40	22	18	18	1.91
44431371--44431443	29	2.5	31	82	11	107	52	0	2	45	1.15
44431482--44431623	75	1.9	75	89	2	223	23	19	5	52	1.67
44431885--44431928	23	1.9	23	95	0	79	15	2	34	47	1.58
44432568--44432641	28	2.6	29	86	4	105	48	4	1	45	1.29
44433016--44433189	93	1.9	94	82	3	226	32	12	7	47	1.70
44433211--44433341	58	2.3	58	81	7	153	35	9	6	48	1.63
44434673--44434705	5	6.6	5	100	0	66	0	18	0	81	0.68
44437848--44437905	5	10.8	5	77	18	55	53	0	0	46	1.00
44437848--44437914	22	3.1	21	81	14	82	52	0	1	46	1.09
44437847--44437898	17	3.1	16	86	8	77	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44437931--44437979	20	2.7	18	77	22	57	51	4	2	42	1.32
44445893--44445917	10	2.5	10	100	0	50	60	0	20	20	1.37
44450314--44450339	2	13.0	2	100	0	52	50	0	0	50	1.00
44451766--44451800	5	7.0	5	93	0	61	37	0	42	20	1.52
44455258--44455362	22	4.8	22	81	6	133	5	6	20	67	1.34
44455345--44455415	23	3.0	23	79	2	70	11	4	16	67	1.36
44455382--44455456	24	3.1	24	75	7	71	10	4	16	69	1.32
44455967--44456059	39	2.3	41	83	5	109	52	7	2	37	1.42
44456159--44456228	29	2.6	26	75	18	72	44	1	0	54	1.09
44460359--44460395	13	2.6	15	83	12	51	13	0	24	62	1.31
44461025--44461099	28	2.7	28	85	6	107	49	1	0	49	1.09
44462419--44462448	13	2.3	13	100	0	60	43	30	20	6	1.77
44468411--44468461	24	2.1	25	81	3	59	52	9	5	31	1.58
44488152--44488427	30	9.2	29	73	14	172	37	3	21	37	1.71
44488152--44488426	60	4.6	59	80	8	279	37	3	21	37	1.71
44488160--44488426	90	3.0	89	82	3	338	37	3	22	36	1.72
44490266--44490317	6	8.8	6	76	4	52	55	1	1	40	1.22
44490266--44490317	12	4.4	12	85	4	70	55	1	1	40	1.22
44490279--44490313	11	3.1	11	87	4	52	57	0	2	40	1.14
44490662--44491507	92	9.2	92	94	1	1414	28	18	20	33	1.96
44491539--44491699	40	3.7	40	67	23	119	40	14	9	34	1.80
44491476--44491748	93	2.9	93	88	4	417	38	16	10	35	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44494030--44494068	18	2.2	18	86	9	53	0	23	0	76	0.78
44498582--44498896	30	10.5	29	85	4	360	38	2	21	37	1.68
44498632--44498896	119	2.2	119	87	2	379	37	2	22	37	1.69
44500761--44500795	6	5.7	6	89	3	52	62	2	0	34	1.10
44501278--44501327	8	6.4	8	95	2	57	50	4	0	46	1.20
44501284--44501328	2	22.5	2	95	0	81	48	2	0	48	1.13
44506470--44506549	34	2.4	34	80	0	88	37	25	5	32	1.77
44507278--44507382	55	1.9	54	84	5	140	66	19	5	8	1.39
44507265--44507356	43	2.1	43	84	9	116	66	20	4	8	1.37
44507397--44507487	22	4.5	20	66	20	55	68	21	5	4	1.29
44508932--44508970	18	2.2	18	85	0	51	56	2	5	35	1.35
44508965--44508989	13	1.9	13	100	0	50	68	0	0	32	0.90
44510470--44510523	4	13.2	4	82	2	54	42	3	7	46	1.49
44510470--44510523	6	8.8	6	87	2	54	42	3	7	46	1.49
44510489--44510525	6	6.2	6	96	0	56	37	0	10	51	1.37
44512253--44512293	20	2.0	20	90	9	66	34	0	24	41	1.55
44516628--44516679	25	2.0	26	85	10	72	48	1	1	48	1.24
44521711--44521750	18	2.2	18	100	0	80	30	17	22	30	1.97
44532830--44532871	21	2.0	21	100	0	84	28	14	19	38	1.90
44535785--44535865	20	4.0	21	84	7	105	17	19	24	38	1.93
44535728--44535857	34	3.8	32	78	10	102	19	20	24	36	1.95
44535751--44535865	41	2.8	42	82	5	146	18	19	24	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44535728--44535864	7	20.0	7	75	4	109	19	20	24	35	1.96
44543511--44543674	78	2.1	78	89	2	249	35	7	18	38	1.80
44548939--44549025	29	3.0	29	91	0	147	31	17	18	33	1.94
44552202--44552237	14	2.4	15	86	13	56	41	0	5	52	1.24
44552273--44552297	13	1.9	13	100	0	50	60	0	0	40	0.97
44559961--44559994	18	1.9	17	88	5	50	32	0	2	64	1.08
44560150--44560202	26	2.0	26	81	0	61	37	7	5	49	1.55
44566060--44566085	7	3.7	7	100	0	52	42	0	0	57	0.98
44567453--44567510	20	2.8	22	75	19	61	72	18	1	6	1.16
44567464--44567554	21	4.3	21	78	9	96	71	18	3	6	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193