genome.fa.s4.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  96  of  193  ( 23090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30946992--30947027	18	2.1	17	89	5	54	61	0	5	33	1.19
30958705--30958749	21	2.3	18	76	20	54	20	22	11	46	1.81
30958716--30958762	21	2.3	21	88	3	69	12	25	8	53	1.67
30958712--30958753	21	2.0	21	100	0	84	14	23	9	52	1.71
30973998--30974162	80	2.1	80	89	2	251	31	26	21	21	1.98
30974135--30974262	33	3.8	34	70	18	88	28	23	23	24	1.99
30974436--30974485	20	2.7	20	84	9	61	58	2	0	40	1.10
30982767--30982849	35	2.4	35	85	4	105	36	21	18	24	1.95
30985164--30985323	28	5.7	28	81	5	173	24	18	5	51	1.68
30985173--30985342	84	2.0	83	82	6	200	25	17	5	51	1.67
30985764--30985857	45	2.1	45	88	4	136	27	24	14	32	1.95
30987803--30987845	19	2.3	19	79	0	50	11	23	2	62	1.40
30990564--30990593	15	1.9	16	93	6	53	56	0	3	40	1.16
30990907--30990962	17	3.3	17	68	9	51	33	7	1	57	1.37
30990898--30990962	34	1.9	34	93	0	112	33	6	1	58	1.32
30998466--30998529	30	2.2	29	83	5	76	28	4	4	62	1.35
30998475--30998535	29	2.1	30	90	3	97	27	3	4	63	1.30
30998547--30998596	19	2.6	19	84	9	66	32	0	10	58	1.31
30999016--30999053	14	2.7	14	84	11	51	44	5	2	47	1.39
31008462--31008522	31	1.9	33	83	6	81	52	4	9	32	1.56
31009388--31009486	45	2.2	44	87	1	135	27	17	19	36	1.94
31009474--31009739	39	6.6	39	75	12	234	25	18	25	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31009430--31009746	81	3.9	82	81	6	326	26	17	25	29	1.98
31010861--31010889	14	2.0	15	93	6	51	55	0	17	27	1.42
31019280--31019331	26	2.0	26	100	0	104	26	11	15	46	1.80
31023742--31024461	38	18.7	38	73	8	445	35	20	17	27	1.95
31023741--31024583	77	10.9	76	76	7	436	34	21	17	27	1.95
31023745--31023984	115	2.1	114	82	3	293	36	19	18	25	1.94
31023745--31024038	115	2.5	113	78	6	286	35	19	18	26	1.95
31024146--31024371	115	2.0	114	83	0	281	35	20	16	26	1.94
31023723--31024642	39	23.7	38	72	12	444	33	21	17	27	1.96
31023723--31024543	387	2.1	386	87	3	1161	34	21	17	27	1.95
31027894--31028277	42	9.6	40	81	8	449	23	17	28	30	1.97
31027894--31028272	81	4.7	81	87	4	509	24	17	28	30	1.97
31028403--31028684	49	5.8	49	79	3	271	19	29	17	34	1.95
31028405--31028684	147	1.9	147	83	1	364	18	29	17	34	1.94
31029100--31029292	106	1.8	107	90	3	318	41	9	22	26	1.85
31029603--31029649	5	8.8	5	82	13	58	0	21	0	78	0.75
31029603--31029649	17	2.8	17	87	9	62	0	21	0	78	0.75
31029603--31029649	22	2.2	21	92	3	76	0	21	0	78	0.75
31029604--31029662	16	3.5	17	80	13	52	1	20	0	77	0.85
31029603--31029656	22	2.5	22	87	6	65	0	24	0	75	0.80
31034869--31034930	29	2.2	29	82	8	74	67	1	14	16	1.31
31037116--31037238	55	2.2	55	88	0	174	21	17	31	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31043208--31043267	31	1.9	31	82	3	75	46	18	15	20	1.84
31052222--31052282	22	2.9	22	80	4	63	42	1	0	55	1.09
31052285--31052326	13	2.9	14	80	13	50	54	0	0	45	0.99
31052289--31052325	16	2.3	16	86	13	58	59	0	0	40	0.97
31056215--31056273	25	2.4	25	74	2	66	71	8	15	5	1.28
31067448--31067486	20	2.0	20	89	0	60	38	10	2	48	1.51
31067453--31067496	20	2.2	20	84	8	54	38	11	2	47	1.52
31079490--31079522	17	2.0	16	94	5	57	15	18	42	24	1.88
31081706--31081756	21	2.4	21	86	0	66	31	29	13	25	1.94
31082390--31082445	28	2.0	28	92	0	94	23	30	16	30	1.96
31084308--31084354	20	2.4	19	79	10	58	14	36	21	27	1.93
31085850--31085882	15	2.1	16	88	5	50	15	6	9	69	1.34
31086040--31086090	3	17.3	3	76	11	52	35	1	1	60	1.19
31086044--31086090	8	5.8	8	78	11	51	34	2	2	61	1.20
31086045--31086085	11	3.6	12	83	9	50	31	2	2	63	1.20
31086045--31086110	29	2.3	30	79	10	75	30	4	4	60	1.37
31092973--31093164	66	2.9	65	78	9	199	29	15	23	31	1.95
31094607--31094655	23	2.2	22	92	3	80	36	2	6	55	1.37
31094629--31094673	17	2.6	17	89	3	63	33	2	6	57	1.37
31094680--31094720	21	2.0	20	90	4	64	53	17	4	24	1.63
31096335--31096631	29	10.1	30	75	9	249	35	24	1	38	1.66
31096335--31096694	59	6.2	57	75	12	277	35	25	2	36	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31096336--31096631	116	2.5	116	79	9	300	35	25	1	37	1.66
31096335--31096694	88	4.1	86	78	11	313	35	25	2	36	1.69
31096618--31096698	30	2.8	29	88	3	117	38	25	4	30	1.77
31096554--31096738	29	6.4	29	74	8	135	36	25	4	33	1.77
31113729--31113769	21	2.0	20	86	9	57	51	0	12	36	1.40
31113814--31113924	47	2.4	47	90	0	168	33	13	18	34	1.90
31116472--31116509	20	1.9	20	94	0	67	10	13	26	50	1.73
31119904--31119955	21	2.5	19	77	17	50	32	13	21	32	1.92
31131611--31131664	20	2.7	21	80	8	67	40	33	3	22	1.71
31131752--31131789	20	1.9	20	94	0	67	18	15	18	47	1.83
31133186--31133240	22	2.6	21	82	5	74	21	16	10	50	1.75
31139123--31139261	2	69.5	2	100	0	278	0	49	0	50	1.00
31144529--31144603	24	3.1	24	88	0	96	30	21	20	28	1.98
31153980--31154087	41	2.6	41	80	0	108	28	22	14	34	1.94
31154225--31154304	39	2.1	39	95	0	142	27	21	20	31	1.98
31161060--31161114	29	1.9	29	82	10	69	41	5	0	52	1.24
31167269--31167293	5	5.0	5	100	0	50	80	0	20	0	0.72
31168573--31168606	18	1.9	18	94	5	61	61	5	5	26	1.42
31173125--31173177	17	3.1	17	86	5	72	49	11	18	20	1.78
31183116--31183140	2	12.5	2	100	0	50	52	0	0	48	1.00
31187378--31187550	39	4.4	39	82	4	188	40	21	16	20	1.91
31187366--31187551	78	2.4	78	81	3	223	39	21	17	21	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31188206--31188242	17	2.1	18	90	5	58	54	10	13	21	1.69
31188976--31189017	20	2.3	19	84	12	52	40	2	9	47	1.49
31189654--31189881	92	2.5	91	78	7	246	35	17	10	36	1.84
31190072--31190220	10	15.9	9	68	16	54	59	2	4	34	1.27
31190081--31190136	28	2.0	29	82	10	71	58	0	3	37	1.15
31190408--31190509	39	2.7	36	75	14	98	27	7	4	59	1.46
31199680--31199740	17	3.5	17	79	2	59	47	18	18	16	1.83
31208589--31208618	12	2.5	12	94	0	51	23	13	3	60	1.48
31214263--31214297	15	2.3	15	90	0	52	14	11	5	68	1.37
31223701--31223757	22	2.6	22	83	5	62	14	7	12	66	1.43
31224211--31224250	13	3.2	12	80	13	53	25	2	2	70	1.13
31228963--31229020	27	2.2	26	93	3	98	44	39	3	12	1.58
31229040--31229103	11	5.8	11	73	0	56	14	29	29	26	1.95
31229042--31229107	22	3.0	22	75	2	71	15	25	30	28	1.96
31229097--31229178	21	4.0	21	79	10	89	18	21	23	36	1.95
31229096--31229177	7	12.0	7	86	2	78	18	23	23	35	1.96
31229096--31229155	28	2.2	27	88	5	86	20	21	21	36	1.95
31232187--31232228	19	2.4	19	88	11	63	42	0	33	23	1.55
31236409--31236448	16	2.4	16	88	12	55	25	0	2	72	0.97
31236541--31236579	7	5.6	7	93	0	69	71	0	0	28	0.86
31258256--31258308	4	13.2	4	81	15	65	71	0	28	0	0.86
31258259--31258308	13	4.0	13	82	10	68	72	0	28	0	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31258266--31258318	24	2.1	26	89	6	83	66	0	33	0	0.92
31258261--31258323	20	3.3	20	89	8	89	66	0	33	0	0.92
31258701--31258752	4	13.0	4	82	8	61	69	0	28	1	0.99
31258725--31258762	20	1.9	20	89	10	60	60	0	36	2	1.11
31258251--31259160	458	2.0	444	92	5	1508	40	0	15	43	1.51
31259427--31259474	16	3.2	16	72	27	59	60	8	0	31	1.26
31261128--31261217	45	2.0	45	91	0	144	33	27	18	20	1.96
31264867--31264929	30	2.1	30	87	0	90	39	0	6	53	1.26
31264831--31264903	36	2.1	36	87	7	105	46	2	4	46	1.36
31271763--31272306	274	2.0	273	96	0	998	26	18	18	36	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193