genome.fa.s4.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  117  of  193  ( 23090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37178502--37178711	39	5.4	39	79	5	226	26	16	18	38	1.92
37180643--37180842	62	3.2	62	92	0	346	33	22	13	31	1.92
37185820--37186250	59	7.3	59	82	8	420	35	2	27	34	1.71
37185913--37186257	29	11.8	28	69	16	182	35	1	27	36	1.66
37188069--37188128	6	10.3	6	72	13	54	48	1	1	48	1.21
37188079--37188134	17	3.3	17	79	18	71	51	1	1	44	1.22
37188079--37188154	34	2.2	35	79	6	84	51	5	1	42	1.33
37188494--37189135	200	3.2	200	88	2	919	18	23	21	36	1.95
37201249--37201352	29	3.6	29	76	17	115	36	4	27	30	1.78
37201245--37201608	58	6.3	57	77	13	243	35	2	28	32	1.72
37201280--37201608	28	11.5	27	69	19	165	35	2	27	33	1.70
37203409--37203468	6	10.3	6	72	13	54	48	1	1	48	1.21
37203419--37203474	17	3.3	17	79	18	71	51	1	1	44	1.22
37203419--37203493	34	2.2	35	78	7	82	50	5	1	42	1.33
37205518--37205562	22	2.1	21	87	4	63	60	0	0	40	0.97
37207517--37207555	15	2.4	16	87	8	53	35	0	0	64	0.94
37207519--37207572	24	2.2	24	80	6	65	40	0	0	59	0.98
37212687--37212737	25	2.3	21	74	25	59	50	19	0	29	1.48
37212693--37212743	25	2.0	25	100	0	102	47	25	0	27	1.53
37219516--37219569	27	2.0	27	88	0	81	44	24	20	11	1.83
37224367--37224422	15	3.8	14	76	23	53	60	0	5	33	1.19
37229536--37229572	17	2.2	17	90	0	56	21	13	18	45	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37230518--37230542	7	3.6	7	100	0	50	24	12	48	16	1.79
37232844--37232877	17	2.0	17	100	0	68	35	29	0	35	1.58
37233118--37233159	17	2.4	17	88	4	57	47	2	28	21	1.63
37234686--37234745	21	2.9	20	80	14	52	30	10	1	58	1.41
37240247--37240278	5	6.4	5	92	0	55	59	21	0	18	1.38
37246233--37246283	20	2.5	20	84	9	59	19	1	31	47	1.61
37246253--37246329	28	2.8	28	92	4	120	19	0	32	48	1.49
37246295--37246404	7	16.6	7	76	11	65	20	0	31	47	1.56
37246351--37246412	19	3.2	18	72	19	54	24	1	27	46	1.62
37246342--37246426	13	6.5	13	75	15	59	24	1	29	44	1.61
37246348--37246430	7	12.6	7	79	12	61	25	1	30	43	1.62
37247603--37247723	47	2.6	47	82	3	138	25	20	14	39	1.90
37248345--37248460	12	10.0	12	67	19	59	64	17	7	10	1.47
37248362--37248424	24	2.6	24	80	5	65	68	14	7	9	1.39
37248397--37248467	33	2.2	33	87	5	99	69	15	5	9	1.35
37248442--37248543	23	4.7	22	74	13	95	65	18	7	7	1.43
37248408--37248509	54	1.9	53	86	7	145	65	17	6	9	1.43
37248462--37248545	22	3.8	22	77	10	82	65	20	7	7	1.41
37250230--37250288	29	2.0	30	86	3	84	30	6	13	49	1.68
37250235--37250303	29	2.3	29	82	9	77	33	10	10	46	1.71
37250431--37250541	31	3.7	30	84	6	118	41	13	10	34	1.79
37256122--37256174	14	3.8	14	80	9	63	52	20	0	26	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37256122--37256182	21	2.9	21	78	9	54	50	24	0	24	1.49
37257091--37257190	43	2.3	43	93	3	166	45	12	10	33	1.75
37258574--37258601	5	5.6	5	100	0	56	64	0	0	35	0.94
37258958--37259048	47	1.9	48	84	10	125	65	12	0	21	1.25
37263326--37263384	29	2.0	29	96	0	109	30	15	16	37	1.90
37269732--37269779	18	2.7	18	76	0	51	20	18	22	37	1.94
37270788--37271054	137	1.9	137	92	0	444	22	18	22	37	1.94
37280379--37280701	52	6.2	52	86	2	407	27	13	21	36	1.92
37285670--37286107	52	8.5	52	86	4	595	25	14	23	36	1.93
37285670--37286107	150	2.9	150	87	3	592	25	14	23	36	1.93
37287530--37287556	14	1.9	14	100	0	54	44	7	25	22	1.79
37288151--37288184	14	2.3	15	90	5	52	41	0	2	55	1.15
37305335--37305372	18	2.2	18	85	4	51	39	7	5	47	1.55
37305606--37305679	20	3.8	20	74	13	64	44	9	4	41	1.55
37306580--37306633	20	2.7	20	82	8	74	37	11	1	50	1.49
37315532--37315569	19	2.0	19	100	0	76	31	10	15	42	1.81
37315977--37316010	17	2.0	17	88	0	50	52	2	0	44	1.16
37316261--37316298	20	1.9	20	89	10	60	23	10	10	55	1.65
37320635--37320672	19	2.0	20	94	5	69	42	21	18	18	1.90
37325880--37325951	24	3.0	24	85	0	99	52	12	11	23	1.71
37333453--37333692	52	4.6	52	88	4	317	29	17	23	29	1.97
37336825--37336886	30	2.1	30	93	0	106	30	6	37	25	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37346612--37346729	60	2.0	60	84	3	157	32	21	14	32	1.93
37346678--37346813	52	2.6	52	91	2	211	35	22	13	28	1.92
37348253--37348564	29	10.4	28	79	10	273	39	8	19	32	1.82
37348253--37348574	60	5.4	60	82	5	400	39	8	19	31	1.82
37353334--37353395	30	2.2	29	85	8	83	58	6	3	32	1.40
37358720--37358875	68	2.3	68	89	0	231	42	18	16	22	1.88
37361057--37361096	21	1.9	20	85	10	53	52	0	0	47	1.00
37365229--37365270	3	14.0	3	100	0	84	33	33	0	33	1.58
37365537--37365607	36	2.0	35	94	2	124	43	12	25	18	1.85
37368059--37368089	16	1.9	16	100	0	62	51	12	12	22	1.74
37369751--37369806	24	2.4	22	77	16	58	32	5	8	53	1.55
37376399--37376531	37	3.6	37	80	4	151	33	28	20	18	1.96
37379748--37379902	68	2.3	68	86	2	204	42	18	16	22	1.89
37383416--37383449	17	2.0	17	94	0	59	32	0	0	67	0.91
37388647--37388730	38	2.2	37	83	10	100	28	26	14	30	1.95
37388664--37388744	37	2.2	38	84	6	103	29	23	14	32	1.95
37388727--37388784	26	2.2	26	90	0	89	32	22	22	22	1.98
37396281--37396374	46	2.0	46	93	0	161	32	21	21	24	1.97
37396644--37396686	22	2.0	22	90	0	68	65	13	4	16	1.43
37396659--37396696	14	2.8	14	81	18	53	65	15	2	15	1.38
37401179--37401203	12	2.1	12	100	0	50	40	16	8	36	1.77
37403286--37403324	19	2.1	19	90	0	60	56	5	15	23	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37404002--37404049	21	2.3	21	85	0	69	4	27	10	58	1.49
37404946--37404991	16	2.8	17	87	9	60	65	0	8	26	1.21
37406330--37406354	12	2.1	12	100	0	50	36	8	16	40	1.77
37409774--37409828	24	2.2	24	90	3	83	47	9	16	27	1.76
37411370--37411403	13	2.8	12	86	4	50	2	17	0	79	0.86
37412077--37412151	3	25.7	3	74	17	61	0	28	1	70	0.95
37412077--37412153	27	2.6	30	78	19	90	0	28	1	70	0.96
37419914--37419968	24	2.2	24	90	3	83	47	9	16	27	1.76
37425651--37425777	3	42.7	3	73	14	86	62	3	4	29	1.34
37425663--37425709	11	4.2	11	97	2	85	65	0	0	34	0.93
37425667--37425706	14	2.9	14	85	14	64	65	0	0	35	0.93
37425664--37425765	28	3.7	28	70	7	84	58	3	5	31	1.40
37433208--37433248	15	2.7	15	92	0	64	2	26	0	70	0.99
37433204--37433248	18	2.5	18	82	7	56	2	28	0	68	1.01
37439389--37439430	18	2.3	18	87	0	57	26	19	23	30	1.98
37453756--37454011	101	2.6	99	72	12	220	27	19	17	35	1.94
37455180--37455222	18	2.3	19	88	4	61	0	18	2	79	0.85
37455807--37455927	64	1.9	64	84	6	165	9	21	12	57	1.63
37456394--37456434	16	2.6	16	96	0	73	56	4	12	26	1.56
37459322--37459391	25	2.7	25	83	14	81	64	1	8	25	1.30
37459506--37459562	27	2.0	27	87	12	80	64	1	7	26	1.28
37459539--37459593	24	2.3	24	80	0	65	69	0	7	23	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37459505--37459572	27	2.5	26	81	11	75	69	1	5	23	1.19
37473194--37473261	36	1.9	36	90	3	111	38	14	27	19	1.91
37475076--37475219	79	1.8	77	82	2	180	36	13	8	41	1.74
37477745--37477843	39	2.5	40	88	3	155	29	19	19	32	1.96
37477745--37477837	40	2.4	39	90	1	150	27	20	17	34	1.95
37482658--37482756	39	2.5	40	88	3	155	30	20	18	31	1.96
37485346--37485603	74	3.5	74	81	1	302	36	31	18	14	1.90
37485316--37485603	37	7.8	37	81	2	265	35	31	19	14	1.91
37490668--37490721	16	3.4	16	84	0	72	44	5	22	27	1.75
37498347--37498445	36	2.8	36	92	0	162	33	16	27	23	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193