genome.fa.s4.2.7.7.80.10.50.1000.130.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  130  of  193  ( 23090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41022031--41022249	29	7.5	31	67	12	131	33	25	4	37	1.75
41021881--41022109	90	2.6	89	82	8	243	35	23	3	37	1.72
41022001--41022254	59	4.3	59	85	4	318	33	26	3	36	1.75
41022029--41022257	117	2.0	117	91	1	370	32	26	4	36	1.78
41022038--41022293	58	4.4	59	80	5	225	30	28	5	36	1.80
41022038--41022293	117	2.2	117	87	2	363	30	28	5	36	1.80
41023899--41023985	30	2.9	29	77	16	88	33	26	3	36	1.73
41023899--41024098	60	3.4	59	84	8	255	33	27	2	37	1.68
41023935--41024100	60	2.8	60	90	2	264	34	27	1	36	1.65
41023899--41024128	29	7.8	29	70	21	131	33	26	2	37	1.69
41023899--41024100	59	3.4	59	85	5	257	34	26	1	37	1.68
41026595--41026640	11	4.4	11	74	20	53	30	0	0	69	0.89
41028646--41028706	14	3.8	14	72	27	50	55	6	1	36	1.36
41028660--41028718	21	3.1	21	68	31	69	54	8	3	33	1.48
41028646--41028718	35	2.1	35	100	0	146	54	8	2	34	1.44
41032342--41032379	7	5.6	7	96	3	69	13	0	0	86	0.56
41034882--41034972	47	1.9	47	95	0	164	59	8	5	26	1.49
41035671--41035802	56	2.4	54	87	5	176	29	15	18	35	1.93
41050314--41050370	17	3.6	17	71	22	61	42	21	14	22	1.88
41050313--41050406	29	3.2	29	93	0	152	42	20	11	25	1.86
41050504--41050612	40	2.7	39	87	5	146	24	16	21	37	1.93
41051031--41051169	53	2.6	53	78	5	154	30	35	15	18	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41051222--41051306	45	1.9	44	83	4	109	31	36	11	20	1.88
41069767--41069804	18	2.1	19	90	5	60	36	0	0	63	0.95
41087414--41087446	17	1.9	17	88	11	50	27	0	6	66	1.15
41087656--41087778	50	2.4	50	81	8	133	37	14	10	37	1.81
41097630--41097683	21	2.6	21	82	5	65	29	9	24	37	1.86
41100702--41100741	21	1.9	21	89	0	62	35	20	0	45	1.51
41107173--41107244	26	2.6	27	76	22	78	27	1	5	65	1.23
41107618--41107666	24	2.1	22	85	7	62	51	8	4	36	1.51
41110158--41110188	15	2.1	15	100	0	62	38	19	6	35	1.77
41120779--41120876	51	1.9	51	83	6	128	33	17	18	30	1.94
41120882--41121645	59	13.0	58	74	12	524	28	15	13	42	1.85
41120886--41121655	61	13.1	56	73	13	434	28	15	13	42	1.85
41120879--41121657	118	6.6	119	80	8	760	28	15	13	42	1.84
41125482--41125516	17	2.1	16	89	5	52	54	0	8	37	1.31
41125549--41125601	12	4.7	11	79	9	54	50	3	3	41	1.38
41125584--41125860	92	2.9	94	89	3	432	44	5	4	44	1.48
41126139--41126206	23	3.0	21	77	22	75	30	5	5	57	1.46
41127224--41127313	29	3.1	29	90	3	144	31	3	4	61	1.32
41127243--41127292	18	2.8	18	74	17	50	30	0	4	66	1.10
41127218--41127317	30	3.3	30	90	4	157	31	3	4	62	1.29
41127210--41127328	30	4.1	30	86	4	145	28	5	3	63	1.32
41128171--41128715	54	9.6	58	78	8	312	38	16	15	29	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41128164--41128499	58	5.7	58	80	7	288	41	15	15	27	1.87
41155139--41155202	28	2.2	28	84	15	78	46	0	4	48	1.23
41159885--41159943	30	1.9	31	89	3	93	45	11	6	35	1.67
41163502--41163586	31	2.8	31	82	5	102	55	11	10	22	1.66
41166745--41166890	70	2.1	72	88	5	201	19	19	32	28	1.96
41168373--41168406	18	1.9	18	88	5	52	29	0	5	64	1.17
41169669--41169701	16	2.0	17	88	5	50	51	15	9	24	1.72
41169754--41169899	59	2.5	59	84	2	177	24	10	10	53	1.68
41170122--41170200	31	2.6	31	88	6	108	49	10	11	29	1.71
41170945--41170993	21	2.2	22	85	7	64	63	12	14	10	1.53
41183909--41183954	23	2.0	23	100	0	92	34	4	43	17	1.69
41189539--41189746	30	6.9	29	76	13	156	40	2	21	35	1.68
41189539--41189750	60	3.5	57	80	12	189	41	2	20	34	1.67
41189568--41189737	90	1.9	89	82	8	211	42	2	22	32	1.66
41189561--41189750	59	3.2	57	78	12	195	42	2	20	35	1.66
41190979--41191022	22	2.0	23	86	4	63	15	20	38	25	1.92
41191817--41191881	33	2.0	33	81	6	78	52	0	3	44	1.16
41191830--41191876	20	2.3	20	85	7	60	53	0	0	46	1.00
41197585--41197635	13	3.9	13	77	10	59	37	17	5	39	1.74
41212418--41212469	20	2.6	21	81	9	72	36	3	0	59	1.16
41230097--41230127	16	1.9	16	93	0	53	74	0	0	25	0.82
41235961--41235990	15	2.0	15	93	0	51	43	6	6	43	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41239285--41239322	14	2.7	14	91	0	58	55	2	2	39	1.28
41240168--41240224	15	3.5	15	71	17	51	49	1	1	47	1.22
41249771--41249822	21	2.5	21	100	0	104	28	0	34	36	1.58
41257484--41257618	68	2.0	67	82	4	164	21	13	22	42	1.87
41259322--41259387	31	2.1	31	85	0	87	39	10	10	39	1.75
41262157--41262251	40	2.4	40	89	3	138	40	16	21	22	1.92
41262364--41262500	41	3.3	40	75	8	132	29	24	27	18	1.98
41262339--41262523	82	2.3	82	83	1	228	29	21	28	21	1.98
41268859--41268909	25	2.0	25	88	0	75	41	11	0	47	1.40
41271381--41271421	2	21.0	2	95	5	75	51	0	0	48	1.00
41273790--41273950	43	3.7	43	81	1	180	26	27	18	27	1.98
41280194--41280339	71	2.1	71	86	0	202	37	20	18	23	1.94
41282382--41282406	13	1.9	13	100	0	50	32	12	0	56	1.36
41284575--41284728	71	2.2	71	95	0	272	34	23	20	22	1.97
41286833--41286945	41	2.8	41	86	5	140	17	31	17	32	1.94
41290006--41290066	29	2.1	29	100	0	122	42	9	16	31	1.81
41291128--41291362	96	2.4	96	82	6	280	48	12	20	17	1.79
41291224--41292332	324	3.4	324	86	1	1517	44	12	22	20	1.84
41292194--41292429	96	2.5	96	88	1	339	44	11	24	19	1.83
41296177--41296210	15	2.3	15	94	0	59	14	0	17	67	1.23
41305135--41305196	30	2.1	30	81	3	72	50	3	4	41	1.40
41305439--41305475	2	18.5	2	100	0	74	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41306967--41307112	69	2.1	69	89	0	220	47	17	4	30	1.66
41311273--41311310	3	12.7	3	100	0	76	68	0	31	0	0.90
41317511--41317584	24	3.2	22	76	14	78	66	13	6	13	1.44
41317513--41317647	21	6.2	21	72	10	85	65	19	5	9	1.43
41317554--41317632	41	1.9	42	92	2	133	62	25	6	6	1.43
41325251--41325464	38	5.5	38	82	4	239	18	21	25	34	1.96
41325253--41325461	78	2.7	78	86	1	258	19	21	24	34	1.96
41325439--41325487	24	2.2	22	85	10	64	12	18	30	38	1.87
41325480--41325560	41	2.0	41	85	0	108	18	19	27	34	1.95
41325704--41325793	45	2.0	45	97	0	171	36	8	23	31	1.86
41327726--41327788	24	2.6	24	87	0	90	49	11	14	25	1.76
41329727--41329777	24	2.1	24	100	0	102	56	3	11	27	1.52
41331731--41331784	27	2.0	27	88	3	81	51	1	12	33	1.51
41335068--41335119	27	1.9	27	84	0	68	34	3	7	53	1.48
41345246--41345284	17	2.4	17	91	4	62	53	0	0	46	1.00
41358755--41358786	5	6.8	5	86	13	50	15	0	0	84	0.63
41359711--41359743	15	2.1	16	94	5	59	78	0	15	6	0.93
41371928--41371972	16	2.8	16	79	3	54	31	0	11	57	1.33
41371946--41372020	17	4.4	17	80	6	71	46	2	2	48	1.30
41371998--41372043	11	4.0	12	77	8	51	60	4	0	34	1.16
41373906--41374002	30	3.2	30	80	2	79	41	21	1	36	1.60
41373927--41374239	29	10.7	30	82	6	315	39	23	1	35	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41373927--41374294	59	6.4	58	83	5	363	37	25	1	35	1.66
41373927--41374302	85	4.3	86	77	9	302	37	25	1	35	1.67
41373927--41374295	114	3.2	114	82	3	366	37	24	1	35	1.66
41373927--41374295	29	12.8	29	79	8	301	37	24	1	35	1.66
41374279--41374354	28	2.6	29	77	10	75	32	30	6	30	1.83
41386348--41387503	92	12.6	92	94	0	1906	32	14	18	34	1.91
41388026--41388070	16	2.8	16	79	3	54	31	0	11	57	1.33
41388044--41388118	17	4.4	17	80	6	71	46	2	2	48	1.30
41388108--41388146	19	2.1	19	85	9	53	53	15	5	25	1.62
41388315--41388352	19	2.0	19	100	0	76	31	36	21	10	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193