genome.fa.s4.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  97  of  193  ( 23090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31281949--31281986	6	6.5	6	81	6	51	34	0	50	15	1.45
31282993--31283480	248	2.0	248	99	0	967	33	18	15	32	1.92
31306055--31306210	80	1.9	83	81	6	192	39	0	4	55	1.20
31306292--31306325	15	2.3	15	89	0	50	38	0	2	58	1.13
31306720--31306764	23	1.9	24	81	4	56	48	0	2	48	1.13
31307191--31307217	3	9.0	3	100	0	54	33	0	0	66	0.92
31307375--31307436	28	2.3	27	86	8	81	56	6	8	29	1.53
31307375--31307444	27	2.5	28	86	6	90	52	5	8	32	1.55
31352845--31352869	13	1.9	13	100	0	50	8	0	20	72	1.10
31358082--31358151	21	3.3	21	81	0	77	32	14	20	32	1.92
31360298--31360323	2	13.0	2	100	0	52	50	0	0	50	1.00
31368416--31368938	50	10.5	50	77	3	484	33	18	31	17	1.94
31368453--31368938	149	3.3	148	80	3	564	33	18	31	16	1.94
31368453--31368932	199	2.4	199	79	4	513	32	18	31	16	1.94
31369970--31370043	33	2.2	33	95	0	130	28	12	8	51	1.67
31379846--31379876	15	2.1	15	93	0	53	22	3	45	29	1.68
31380415--31380627	106	2.0	106	99	0	417	35	11	26	26	1.91
31382784--31382816	16	2.1	17	88	11	52	9	9	6	75	1.18
31386042--31386096	26	2.1	26	82	0	65	38	10	1	49	1.49
31386618--31386737	45	2.7	44	83	5	134	24	18	15	41	1.89
31390488--31390593	20	5.3	19	74	10	70	40	19	27	12	1.87
31390475--31390593	40	3.0	39	72	9	105	38	20	28	12	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31398634--31398684	18	2.8	19	82	8	63	62	3	33	0	1.13
31405026--31405066	20	2.0	20	100	0	82	31	19	19	29	1.96
31407340--31407422	24	3.7	22	83	10	98	4	2	22	69	1.19
31407337--31407409	12	6.2	12	79	3	85	5	1	23	69	1.17
31407369--31407455	32	2.7	32	85	1	111	6	4	20	67	1.32
31408999--31409114	30	3.9	29	80	8	110	36	22	1	39	1.64
31409039--31409186	30	4.9	30	80	3	145	35	22	4	38	1.73
31408999--31409173	60	2.9	60	79	4	165	34	22	3	38	1.71
31413170--31413208	15	2.7	15	96	4	71	33	25	7	33	1.84
31420494--31421011	264	2.0	264	99	0	1018	27	22	13	37	1.91
31421387--31422611	77	15.9	77	88	1	1565	32	23	18	25	1.97
31422523--31422612	38	2.3	38	83	11	103	33	24	20	22	1.97
31424082--31424230	60	2.5	60	86	5	189	34	25	4	34	1.77
31424088--31424277	60	3.2	61	80	7	178	33	26	4	35	1.76
31424089--31424277	30	6.4	30	75	8	138	33	26	4	35	1.76
31435717--31436441	77	9.4	77	88	1	986	32	24	18	25	1.97
31436316--31436480	38	4.2	38	76	11	115	33	26	18	21	1.96
31437945--31438135	30	6.3	30	78	6	172	30	24	5	39	1.77
31437937--31438135	60	3.3	60	81	4	222	31	23	5	39	1.78
31439335--31439418	36	2.3	36	91	4	134	25	20	22	32	1.98
31451620--31451824	101	2.0	101	93	0	347	38	18	17	26	1.92
31457769--31457827	16	3.7	16	73	13	50	54	3	1	40	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31458419--31458443	13	1.9	13	100	0	50	68	0	0	32	0.90
31458385--31458567	10	18.8	10	67	14	71	59	1	4	34	1.24
31458428--31458499	19	3.7	19	86	1	90	61	1	5	31	1.28
31458370--31458591	9	23.0	9	66	17	58	60	1	4	33	1.24
31458458--31458589	29	4.5	30	72	16	98	59	1	6	33	1.31
31458370--31458499	10	13.3	10	67	8	61	63	0	3	33	1.16
31462233--31462526	43	6.8	43	91	0	372	35	9	21	32	1.86
31462926--31462961	18	2.0	18	100	0	72	22	5	22	50	1.70
31465161--31465424	30	8.8	29	81	10	187	38	1	25	34	1.65
31465158--31465419	60	4.4	58	78	10	224	38	1	26	33	1.66
31465224--31465424	90	2.2	89	82	5	226	40	0	25	33	1.62
31466135--31466886	39	19.0	39	74	8	432	25	17	28	28	1.98
31466144--31466886	78	9.4	77	76	8	510	25	17	28	27	1.98
31466135--31466887	117	6.3	117	76	9	503	25	17	28	28	1.98
31468900--31468946	18	2.6	18	80	12	51	2	14	4	78	0.99
31472496--31472535	16	2.5	16	88	8	55	62	5	7	25	1.42
31472524--31472566	16	2.6	16	96	3	77	58	4	13	23	1.55
31472722--31472856	30	4.5	30	81	7	139	40	0	25	32	1.61
31472722--31472834	60	1.9	60	84	0	154	41	0	25	31	1.62
31479142--31479174	12	2.8	12	100	0	66	42	18	15	24	1.88
31482618--31482726	36	3.1	36	88	3	161	36	14	25	22	1.93
31483396--31483450	21	2.6	21	85	0	74	25	18	23	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31483728--31483839	40	2.8	40	84	2	154	34	19	20	25	1.96
31483720--31483856	40	3.4	40	77	4	150	34	18	21	25	1.96
31488437--31488523	44	2.0	44	84	4	113	71	19	4	4	1.22
31488487--31488520	12	2.8	12	100	0	68	76	8	5	8	1.15
31488520--31488591	20	3.6	20	81	7	76	66	18	8	6	1.40
31488555--31488606	22	2.6	19	78	9	59	71	23	3	1	1.13
31488535--31488602	20	3.3	20	76	9	66	69	20	5	4	1.28
31489104--31489237	68	2.0	68	100	0	268	28	21	13	36	1.91
31493111--31493184	24	3.0	23	82	9	85	17	27	1	54	1.51
31497687--31497791	33	3.2	32	75	16	117	51	0	1	46	1.12
31497819--31497900	14	5.7	14	70	18	53	43	0	1	54	1.07
31497832--31497908	16	5.2	16	68	25	53	48	0	1	50	1.09
31497788--31497908	21	6.0	21	66	19	69	47	0	1	51	1.10
31497730--31497908	26	7.0	26	68	25	82	47	0	1	50	1.11
31497778--31497908	58	2.2	59	91	2	210	47	0	1	51	1.10
31498063--31498109	16	2.9	16	90	0	67	36	23	0	40	1.55
31508963--31509013	24	2.1	24	92	0	84	58	5	11	23	1.55
31532306--31532377	25	2.9	25	78	12	85	23	18	29	29	1.97
31532308--31532384	24	3.2	22	82	8	73	22	18	28	31	1.97
31537511--31537643	28	4.8	28	80	9	130	39	25	13	21	1.90
31541437--31541803	188	2.0	187	96	0	680	28	18	17	36	1.93
31546025--31546080	21	2.6	22	88	8	80	30	10	32	26	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31547254--31547310	26	2.2	26	84	6	71	70	3	5	21	1.22
31550733--31550766	4	8.5	4	86	0	50	70	0	5	23	1.09
31554234--31554699	233	2.0	233	96	0	860	23	20	17	37	1.93
31557542--31557583	15	2.8	15	82	10	50	73	7	2	16	1.15
31558080--31558119	19	2.1	20	90	9	66	17	0	10	72	1.11
31558846--31558884	15	2.4	17	87	12	55	56	0	0	43	0.99
31568619--31568678	21	2.9	21	79	0	66	36	25	13	25	1.92
31570022--31570064	22	2.0	22	81	9	52	34	13	0	51	1.42
31577808--31577846	17	2.3	17	86	8	53	64	0	35	0	0.94
31581327--31581362	18	1.9	19	88	5	56	16	5	13	63	1.47
31591106--31591168	20	3.2	20	76	17	60	34	4	14	46	1.66
31621576--31621623	20	2.3	21	75	3	53	18	16	16	47	1.82
31622353--31622742	98	3.9	100	78	5	369	35	18	22	22	1.96
31622378--31622693	148	2.1	147	84	3	429	36	18	22	22	1.95
31622351--31622754	50	8.2	50	78	4	338	35	18	23	23	1.95
31623382--31623445	33	2.1	30	83	16	78	64	4	15	15	1.46
31624552--31624636	20	4.2	20	68	15	59	34	7	12	45	1.70
31624817--31624858	21	2.0	22	90	4	68	47	11	11	28	1.76
31636019--31636062	18	2.4	18	88	0	61	52	11	29	6	1.63
31640104--31640151	18	2.8	16	79	14	51	2	20	0	77	0.88
31644743--31644786	23	2.0	22	86	4	61	45	15	0	38	1.47
31650040--31650243	102	2.0	102	99	0	399	24	20	18	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31655825--31655868	23	2.0	22	86	4	61	45	15	0	38	1.47
31664310--31664348	13	2.8	13	88	7	51	38	2	10	48	1.51
31670373--31670421	24	2.0	24	85	14	66	8	38	0	53	1.31
31677598--31677650	25	2.1	25	82	0	61	50	0	1	47	1.12
31678038--31678071	6	5.7	6	92	0	59	32	14	0	52	1.42
31678514--31678576	26	2.5	26	79	7	67	47	3	1	47	1.27
31680467--31680525	17	3.5	17	81	6	75	54	5	0	40	1.23
31680913--31681009	37	2.6	37	93	3	160	21	26	20	30	1.98
31680950--31681738	200	3.9	200	88	2	1174	18	23	21	35	1.95
31693919--31694180	59	4.4	59	88	3	348	36	4	28	30	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193