genome.fa.s4.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  143  of  193  ( 23090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44571937--44572303	49	7.5	49	69	11	232	18	25	17	38	1.92
44571894--44572310	99	4.3	98	84	4	509	18	24	17	39	1.92
44585093--44585459	49	7.5	49	69	10	232	18	25	17	38	1.92
44585050--44585462	99	4.2	97	83	5	499	18	24	17	38	1.92
44601840--44602012	67	2.6	66	88	6	253	52	4	0	42	1.26
44615116--44615148	16	2.0	17	88	5	50	51	0	0	48	1.00
44619281--44619386	23	4.7	22	81	8	106	39	24	22	13	1.90
44619272--44619396	23	5.5	23	76	3	92	44	23	20	12	1.85
44626568--44626676	23	4.8	22	82	6	94	40	24	22	11	1.88
44630898--44630922	12	2.1	12	100	0	50	44	0	0	56	0.99
44630982--44631077	30	3.2	30	65	25	76	37	4	14	43	1.65
44632832--44632927	40	2.4	40	81	8	113	34	25	19	20	1.96
44641287--44641327	16	2.6	17	85	11	52	60	0	0	39	0.96
44650656--44650732	41	1.9	40	86	5	111	25	12	18	42	1.86
44654885--44654933	16	2.7	20	75	21	61	51	0	0	48	1.00
44654893--44654923	16	1.9	16	100	0	62	45	0	0	54	0.99
44655048--44655089	13	3.2	13	86	3	57	23	2	2	71	1.10
44657956--44658003	24	2.0	24	100	0	96	41	20	12	25	1.87
44665080--44665114	18	1.9	18	94	0	61	60	17	8	14	1.58
44671121--44671184	31	2.1	31	100	0	128	21	28	6	43	1.77
44678811--44678838	1	28.0	1	100	0	56	0	100	0	0	0.00
44680751--44680825	27	2.8	27	91	0	114	33	22	6	37	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44684266--44684361	42	2.3	42	89	5	142	45	10	1	42	1.45
44684539--44684565	9	3.0	9	100	0	54	55	0	0	44	0.99
44690437--44690692	59	4.4	59	87	2	374	34	4	29	31	1.77
44690437--44690719	116	2.4	116	85	5	383	34	4	29	31	1.77
44690437--44690721	29	9.8	29	73	13	201	34	4	29	31	1.77
44690828--44691290	162	2.9	162	92	2	727	43	12	17	26	1.85
44692898--44693000	6	17.2	6	67	18	54	49	2	0	46	1.23
44692925--44693000	17	4.6	17	77	9	77	53	3	1	40	1.27
44692930--44692991	11	5.8	11	76	14	58	56	3	1	38	1.25
44693338--44693884	68	7.9	68	88	3	824	29	19	16	34	1.94
44693300--44693898	281	2.1	280	95	0	1090	30	19	16	34	1.94
44705682--44706178	160	3.1	161	90	2	757	43	12	17	25	1.85
44707795--44707913	6	20.2	6	71	13	86	48	2	0	47	1.21
44707820--44707913	17	5.8	17	80	9	97	53	3	1	42	1.24
44707820--44707915	31	3.0	32	83	4	113	54	3	1	41	1.23
44707965--44708393	52	8.3	52	86	0	545	33	22	16	27	1.96
44718841--44718875	12	2.8	12	86	4	52	77	0	22	0	0.78
44718938--44719116	99	1.8	99	86	3	263	40	5	7	45	1.56
44719580--44719653	26	2.8	27	87	4	105	33	21	5	39	1.76
44727095--44727145	22	2.3	22	86	6	68	64	7	5	21	1.41
44727105--44727149	22	2.0	22	95	0	81	55	8	6	28	1.56
44733340--44733418	39	2.0	39	85	0	104	26	13	29	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44737768--44737804	18	2.0	19	89	5	58	13	13	8	64	1.48
44746418--44746787	30	12.4	30	86	3	514	34	2	25	37	1.68
44747457--44747504	21	2.3	22	86	10	66	10	14	4	70	1.29
44748365--44748403	20	2.0	20	85	10	53	15	12	48	23	1.79
44748609--44748673	17	4.0	17	78	11	73	53	0	4	41	1.21
44748622--44748692	11	6.5	11	72	15	58	56	0	4	39	1.19
44748593--44748690	31	3.3	29	81	6	99	53	0	4	42	1.20
44748929--44749546	68	8.7	70	86	7	613	30	19	16	33	1.94
44748929--44749126	38	5.2	38	66	16	113	30	19	16	33	1.93
44749000--44749271	38	7.4	37	66	19	140	31	18	14	34	1.91
44749190--44749438	31	7.5	31	66	19	126	28	20	16	34	1.94
44761264--44761358	50	1.9	50	82	4	120	42	3	24	30	1.70
44761422--44761999	30	19.4	30	87	2	808	35	2	25	36	1.69
44762664--44762717	21	2.7	21	83	13	69	9	14	3	72	1.24
44763582--44763620	20	2.0	20	85	10	53	15	10	48	25	1.76
44763840--44763910	11	6.5	11	75	15	67	57	0	2	39	1.13
44763829--44763908	31	2.6	30	86	5	99	57	0	3	38	1.17
44766465--44766642	98	1.8	98	88	1	277	42	8	6	42	1.61
44771335--44771476	74	1.9	73	85	7	198	33	33	1	31	1.67
44777849--44777991	58	2.5	58	82	3	182	40	23	1	34	1.64
44780012--44780055	5	8.8	5	97	0	79	40	0	56	2	1.11
44784633--44784713	42	1.9	42	92	0	135	37	11	8	43	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44784695--44784736	21	2.0	21	95	0	75	33	11	4	50	1.60
44792447--44792480	18	1.9	17	94	5	59	64	0	0	35	0.94
44794544--44794578	17	2.0	18	88	5	54	48	2	0	48	1.16
44795098--44795128	16	1.9	16	93	0	53	38	0	0	61	0.96
44798882--44799335	201	2.3	194	83	6	549	24	27	20	27	1.99
44801161--44801210	24	2.2	22	82	10	57	60	0	0	40	0.97
44801191--44801265	39	2.0	37	84	7	98	42	1	1	54	1.17
44802579--44802658	27	3.0	27	100	0	160	41	15	3	40	1.64
44809461--44809510	2	25.0	2	100	0	100	50	0	0	50	1.00
44816314--44816356	12	3.4	13	81	12	54	60	0	2	37	1.10
44821442--44821506	27	2.4	27	100	0	130	24	21	32	21	1.98
44828352--44828398	16	3.1	16	76	17	55	12	8	27	51	1.69
44828352--44828392	14	2.8	16	78	17	52	14	7	26	51	1.69
44833570--44833617	23	2.0	24	96	4	89	35	14	16	33	1.89
44841726--44841789	21	3.0	21	72	14	60	60	0	1	37	1.06
44846299--44846359	27	2.3	27	85	0	77	27	32	24	14	1.95
44849050--44849088	14	2.8	14	88	0	51	41	17	5	35	1.72
44851464--44851512	16	3.2	15	86	11	64	48	0	8	42	1.32
44873594--44873693	43	2.3	43	80	0	110	22	15	36	27	1.93
44874748--44874843	43	2.3	41	85	3	129	20	17	37	23	1.94
44874794--44874940	53	2.8	53	82	8	192	22	16	34	26	1.95
44874994--44875072	41	1.9	41	89	0	122	13	8	37	39	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44874995--44875082	41	2.1	41	85	0	113	17	10	37	35	1.83
44875491--44875597	40	2.7	40	72	5	108	36	20	17	25	1.94
44875700--44875779	29	2.8	29	78	0	79	30	20	11	38	1.87
44875728--44875817	29	3.1	29	83	0	108	27	15	17	38	1.90
44882743--44882777	1	35.0	1	100	0	70	0	0	100	0	0.00
44886259--44886308	22	2.3	21	82	6	55	56	0	6	38	1.24
44888283--44888336	26	2.0	27	96	3	101	33	7	22	37	1.82
44900946--44900976	12	2.7	11	95	5	53	35	0	0	64	0.94
44903292--44903363	30	2.4	31	81	6	85	50	18	11	20	1.77
44904663--44904734	30	2.4	30	83	6	83	20	12	18	48	1.80
44904830--44904888	30	1.9	31	93	3	102	27	13	22	37	1.91
44907525--44907603	33	2.4	32	74	17	81	24	11	10	54	1.66
44907856--44907944	44	2.0	44	91	0	142	35	19	19	25	1.95
44911494--44911541	22	2.3	20	79	10	51	50	0	0	50	1.00
44922282--44922326	3	15.0	3	100	0	90	33	0	0	66	0.92
44922325--44922359	3	11.7	3	100	0	70	0	0	31	68	0.90
44923440--44923696	97	2.5	102	85	9	337	30	17	17	34	1.93
44923696--44923865	63	2.8	59	80	12	184	31	18	11	38	1.87
44923889--44924067	60	3.0	59	82	8	184	28	16	16	39	1.90
44923774--44923985	107	2.0	107	82	7	261	28	12	14	43	1.82
44923883--44924118	59	4.0	60	78	9	216	28	15	15	40	1.88
44924933--44924987	17	3.5	17	71	19	64	60	3	12	23	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44924925--44925030	30	3.5	30	89	1	122	62	2	7	27	1.36
44926207--44926251	19	2.4	19	89	10	67	64	2	4	28	1.25
44926216--44926269	28	1.9	28	85	14	76	66	1	3	27	1.19
44926216--44926274	20	2.9	20	78	12	57	62	1	3	32	1.21
44927299--44927357	22	2.7	23	84	7	86	20	10	32	37	1.86
44927450--44928184	84	8.7	84	91	1	1150	48	4	3	43	1.41
44931993--44932681	242	2.9	239	84	7	825	36	16	18	28	1.93
44931993--44932540	62	9.0	61	82	7	584	35	16	18	28	1.93
44932447--44932649	108	1.9	108	85	4	284	39	12	15	31	1.85
44932542--44932703	62	2.7	61	84	9	217	35	16	16	32	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193