genome.fa.s4.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  151  of  193  ( 23090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47093468--47093508	20	2.0	20	85	0	55	53	0	2	43	1.13
47098135--47098164	13	2.3	13	94	0	51	40	0	3	56	1.16
47104961--47104994	6	5.7	6	100	0	68	50	0	17	32	1.47
47108065--47108100	2	17.5	2	88	5	54	47	0	5	47	1.25
47108509--47108548	16	2.5	16	88	8	55	37	7	27	27	1.84
47109863--47109945	26	3.2	25	71	6	67	49	3	0	46	1.19
47115538--47115592	27	2.0	27	85	0	74	43	3	1	50	1.30
47117104--47117131	6	4.7	6	100	0	56	28	17	35	17	1.93
47117366--47117452	27	3.0	29	75	13	90	43	6	2	47	1.42
47117460--47117542	43	2.0	42	85	2	112	36	15	8	39	1.78
47123935--47123983	14	3.8	13	80	17	57	44	8	0	46	1.33
47129003--47129045	20	2.2	20	95	0	77	55	9	0	34	1.32
47129003--47129076	19	3.9	19	79	12	73	52	8	0	39	1.31
47133499--47133532	17	1.9	18	94	5	61	35	0	5	58	1.22
47136427--47136459	9	3.6	9	95	4	57	9	3	0	87	0.63
47146027--47146158	70	1.9	70	85	0	183	48	7	7	36	1.60
47146582--47146649	29	2.3	29	100	0	136	30	35	17	16	1.92
47149515--47149548	16	2.1	16	100	0	68	38	0	0	61	0.96
47163119--47163157	19	2.1	19	85	0	51	25	20	10	43	1.83
47172623--47172716	41	2.3	41	92	0	152	28	3	28	39	1.72
47184634--47184678	22	2.0	22	95	0	81	51	4	17	26	1.65
47192727--47192763	20	1.9	20	88	5	58	62	0	0	37	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47192717--47192766	25	2.0	26	92	4	84	60	0	0	40	0.97
47196317--47196358	16	2.4	18	84	7	52	38	0	2	59	1.10
47197547--47197611	29	2.2	29	86	0	94	46	12	9	32	1.73
47197668--47197769	49	2.0	50	92	5	170	31	16	11	40	1.85
47198707--47198773	31	2.2	30	91	2	107	40	22	10	26	1.86
47198790--47198874	42	2.0	42	100	0	170	21	18	40	20	1.92
47198904--47198975	30	2.4	30	83	2	81	47	18	13	20	1.82
47200242--47200311	30	2.3	31	85	7	90	22	14	15	47	1.82
47201373--47201425	2	26.5	2	96	0	97	47	0	0	52	1.00
47201920--47202030	30	3.7	29	80	9	116	45	12	16	25	1.82
47203240--47203323	42	2.0	42	88	4	125	30	0	21	47	1.51
47206322--47206415	46	2.0	46	100	0	188	34	21	10	34	1.88
47214841--47214866	13	2.0	13	100	0	52	84	7	0	7	0.77
47216766--47217342	49	11.8	48	72	9	330	36	19	25	18	1.94
47216767--47217385	98	6.3	98	88	0	835	37	19	25	17	1.94
47224525--47224601	38	2.0	38	92	0	127	41	24	10	23	1.85
47227485--47227517	10	3.3	10	87	12	50	54	0	0	45	0.99
47227484--47227513	9	3.2	9	90	9	51	56	0	0	43	0.99
47236233--47236258	2	13.0	2	100	0	52	50	0	0	50	1.00
47236821--47236859	14	2.7	14	84	4	51	61	2	0	35	1.10
47239288--47239338	19	2.7	19	75	3	50	54	13	1	29	1.50
47242063--47242104	22	2.0	22	86	13	61	52	0	16	30	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47246420--47246520	38	2.6	40	71	10	100	21	19	28	29	1.98
47247730--47248039	150	2.1	150	98	0	602	32	16	15	35	1.90
47254684--47254717	16	2.1	17	88	5	52	58	0	0	41	0.98
47255097--47255125	5	5.8	5	100	0	58	20	0	0	79	0.74
47263443--47263488	23	2.0	23	87	8	67	50	2	0	47	1.13
47266075--47266534	242	1.9	241	95	1	823	31	9	16	43	1.79
47273841--47273888	24	1.9	26	83	8	64	52	2	0	45	1.12
47274337--47274380	22	2.0	22	90	0	70	36	0	6	56	1.26
47276877--47276938	24	2.6	24	81	0	70	25	14	9	50	1.73
47278855--47278929	24	3.1	24	92	0	123	25	13	6	54	1.63
47279950--47280258	105	2.9	106	82	3	381	32	17	24	25	1.97
47280807--47280831	2	12.5	2	100	0	50	0	48	0	52	1.00
47282276--47282456	91	2.0	91	89	2	274	20	15	11	52	1.73
47313196--47313262	3	22.3	3	78	6	64	1	4	37	56	1.29
47313211--47313262	18	2.9	18	91	0	86	0	3	40	55	1.18
47313265--47313299	3	12.0	3	90	6	54	0	2	62	34	1.10
47319477--47319510	15	2.3	15	89	0	50	14	2	35	47	1.60
47319776--47319820	23	2.0	23	86	0	63	31	13	20	35	1.91
47320059--47320141	42	2.0	42	88	4	123	48	20	0	31	1.50
47322260--47322323	33	1.9	34	84	9	87	54	6	1	37	1.35
47323690--47323718	6	4.8	6	100	0	58	48	17	0	34	1.47
47326445--47326623	99	1.8	99	92	0	304	12	17	31	38	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47326445--47326646	99	2.0	99	88	0	296	11	16	32	39	1.85
47327398--47327455	20	2.9	19	74	16	64	56	3	36	3	1.33
47328700--47328751	26	2.0	25	85	10	70	28	1	3	65	1.21
47328729--47328758	13	2.4	13	94	5	53	33	0	6	60	1.23
47329055--47329161	32	3.5	30	73	12	92	50	8	16	24	1.73
47329037--47329161	60	2.1	59	86	1	169	49	8	17	24	1.75
47329098--47329208	58	1.9	58	81	3	134	51	9	14	25	1.71
47329983--47330032	19	2.7	19	71	17	52	56	2	0	42	1.11
47330019--47330089	29	2.5	30	79	6	85	52	2	0	45	1.15
47335704--47335742	21	2.0	21	85	14	57	61	0	0	38	0.96
47335935--47335970	18	2.0	18	88	0	54	50	2	8	38	1.47
47336735--47336796	9	6.4	9	77	14	52	51	4	3	40	1.39
47337015--47337055	22	1.9	21	85	14	57	63	4	12	19	1.46
47337892--47338208	30	10.8	29	71	12	159	34	26	3	35	1.75
47337892--47338206	29	10.7	29	71	14	184	34	26	3	35	1.75
47337884--47338152	59	4.5	59	81	8	264	34	25	4	35	1.75
47337890--47338231	59	5.8	59	77	9	238	33	26	4	35	1.76
47342560--47342648	42	2.1	42	89	2	135	50	7	14	26	1.70
47343485--47343587	6	16.5	6	76	17	95	81	0	17	0	0.74
47343482--47343582	51	2.0	50	94	5	177	81	0	16	1	0.79
47343485--47343587	45	2.3	44	85	5	145	81	0	17	0	0.74
47344742--47345012	101	2.7	100	82	2	285	39	20	24	15	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47344770--47344922	50	3.1	50	73	8	150	39	20	23	15	1.91
47345436--47346153	206	3.5	205	88	0	1060	34	19	22	23	1.96
47345958--47346054	49	2.0	50	82	10	119	37	18	22	21	1.95
47346127--47346655	201	2.6	201	93	0	898	34	20	22	22	1.97
47347113--47347148	18	2.0	18	88	0	54	52	2	5	38	1.39
47351639--47351682	10	4.0	12	82	14	51	75	0	20	4	0.98
47351640--47351684	21	2.1	22	91	4	74	77	0	20	2	0.87
47351733--47351774	16	2.5	17	85	14	61	76	0	23	0	0.79
47351733--47351774	17	2.5	17	88	11	61	76	0	23	0	0.79
47352646--47352680	17	2.1	17	89	5	54	80	0	20	0	0.72
47352638--47352686	19	2.5	20	84	12	66	79	0	20	0	0.73
47352639--47352686	21	2.4	21	86	6	64	79	0	20	0	0.74
47354069--47355286	39	31.2	39	73	6	660	25	31	18	24	1.98
47354049--47355285	78	15.8	78	78	4	929	25	31	18	24	1.98
47354049--47355272	313	3.9	311	77	6	951	25	31	18	24	1.97
47355279--47355391	46	2.5	46	88	5	158	33	24	14	27	1.94
47356955--47357190	90	2.7	89	82	5	264	34	23	2	38	1.70
47356955--47357190	30	8.0	30	78	3	212	34	23	2	38	1.70
47357389--47357427	19	2.1	19	90	0	60	30	23	2	43	1.67
47365860--47365897	19	2.0	20	84	5	51	52	13	10	23	1.71
47367449--47367906	235	2.0	232	93	1	790	30	13	27	28	1.94
47370818--47370868	19	2.7	19	90	0	75	37	3	31	27	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47375365--47375409	19	2.4	19	96	0	81	40	0	31	28	1.57
47377410--47377707	148	2.0	148	99	0	587	34	10	23	31	1.89
47388400--47388437	19	2.1	19	85	14	53	44	0	2	52	1.14
47389866--47389891	10	2.6	10	100	0	52	42	0	50	7	1.31
47391332--47391363	10	3.2	10	90	0	55	21	9	0	68	1.17
47393990--47394030	7	5.9	7	100	0	82	0	12	14	73	1.11
47394546--47394590	22	2.0	23	83	12	58	51	11	0	37	1.38
47399547--47399610	20	3.2	20	77	16	78	37	7	14	40	1.74
47407326--47407369	21	2.0	21	82	13	52	54	20	2	22	1.56
47407664--47407746	29	2.7	32	78	10	84	53	3	0	43	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193