genome.fa.s4.2.7.7.80.10.50.1000.181.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032248.1 Gossypioides kirkii chromosome KI_06
Parameters: 2 7 7 80 10 50 1000
Length:  60359545

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   

This is table  181  of  193  ( 23090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56502675--56502763	31	3.0	30	77	4	90	32	11	15	40	1.83
56504197--56504405	92	2.3	90	84	6	264	42	16	7	33	1.76
56504455--56504498	21	2.2	20	87	4	61	61	0	0	38	0.96
56504818--56504856	20	2.0	20	85	10	53	20	5	7	66	1.36
56504917--56504986	10	7.2	10	75	10	65	32	1	0	65	1.01
56504917--56504986	19	3.6	19	75	11	79	32	1	0	65	1.01
56505467--56505524	30	1.9	30	85	0	80	46	10	1	41	1.48
56505498--56505556	22	2.7	22	71	10	57	47	6	0	45	1.29
56506099--56506162	18	3.3	18	73	14	56	9	4	14	71	1.27
56506112--56506227	21	5.4	21	71	14	76	10	4	15	69	1.31
56506180--56506327	23	6.7	23	67	17	62	14	6	11	67	1.40
56506181--56506266	43	2.0	44	84	6	113	9	5	15	69	1.33
56506396--56506450	27	2.0	27	86	6	76	21	0	9	69	1.16
56507696--56507736	16	2.5	17	80	7	50	53	4	0	41	1.22
56510705--56510729	6	4.2	6	100	0	50	16	36	16	32	1.90
56512372--56512563	106	1.8	106	80	4	235	37	8	15	38	1.78
56513398--56513425	12	2.3	12	100	0	56	64	0	0	35	0.94
56517741--56518044	152	2.0	152	94	0	527	35	10	21	32	1.88
56520229--56521617	216	6.4	216	90	1	2041	27	18	13	40	1.88
56520229--56521617	649	2.1	648	88	1	2104	27	18	13	40	1.88
56524832--56524905	6	12.5	6	80	8	53	25	25	0	48	1.51
56524851--56524902	18	2.8	19	88	8	81	23	30	0	46	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56524851--56524901	12	4.2	12	87	9	77	21	31	0	47	1.51
56533198--56533258	17	3.4	17	79	6	68	47	3	1	47	1.28
56533198--56533272	6	12.5	6	70	16	57	48	4	1	46	1.29
56534041--56534108	6	11.5	6	78	9	50	26	25	0	48	1.51
56534060--56534108	18	2.7	18	87	6	73	22	28	0	48	1.50
56534062--56534104	12	3.5	13	87	9	56	23	30	0	46	1.52
56536190--56536239	20	2.7	19	85	11	68	14	14	2	70	1.27
56538598--56538639	15	2.6	16	81	14	50	35	0	2	61	1.09
56538597--56538645	24	2.0	25	84	4	64	38	0	2	59	1.09
56541049--56541098	5	9.8	5	88	2	73	22	0	0	78	0.76
56543802--56543834	3	11.0	3	93	0	57	30	3	33	33	1.73
56548009--56548044	17	2.0	19	89	10	58	25	5	27	41	1.77
56550475--56550508	16	2.2	16	89	5	52	41	2	8	47	1.50
56555574--56555762	105	1.8	105	97	0	360	37	26	20	15	1.93
56560460--56560652	99	1.9	99	90	0	305	31	24	10	33	1.89
56562174--56562210	7	5.3	7	93	0	65	0	16	13	70	1.17
56566095--56566127	11	3.0	11	95	0	57	33	0	0	66	0.92
56566136--56566160	9	2.8	9	100	0	50	68	0	0	32	0.90
56566238--56566302	30	2.2	30	94	0	112	63	16	0	20	1.32
56566755--56566878	62	2.0	62	100	0	248	40	24	11	24	1.87
56575151--56575194	14	3.1	14	84	12	54	38	0	0	61	0.96
56582410--56582457	2	24.0	2	100	0	96	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56584989--56585128	51	2.7	51	87	0	190	34	15	22	27	1.94
56587079--56587131	23	2.3	23	86	0	70	9	26	20	43	1.82
56587143--56587200	23	2.6	23	91	2	91	12	22	29	36	1.90
56591239--56591667	94	4.6	94	89	3	616	43	6	3	47	1.44
56591360--56591519	46	3.4	47	68	17	125	41	6	3	49	1.44
56591761--56591819	22	2.7	22	86	2	84	38	35	6	18	1.78
56591837--56591885	10	4.9	10	87	0	71	18	30	20	30	1.96
56592863--56592924	22	2.8	22	87	2	79	24	3	3	69	1.18
56592898--56592994	31	3.1	30	75	11	88	37	4	3	55	1.35
56592898--56592985	33	2.7	32	75	6	97	36	2	3	57	1.28
56594153--56594270	30	4.0	30	88	1	166	27	6	3	61	1.37
56594162--56594206	23	2.0	23	82	8	56	31	4	4	60	1.37
56595074--56595580	59	8.7	59	72	16	208	40	14	17	27	1.88
56595091--56595887	60	13.3	58	72	14	412	40	14	16	28	1.87
56595271--56595887	60	10.0	60	75	12	493	41	13	15	29	1.86
56595271--56595887	121	5.0	121	74	11	527	41	13	15	29	1.86
56595849--56596010	55	3.0	55	83	2	184	31	19	19	29	1.96
56596391--56596445	21	2.8	20	79	12	62	60	0	20	20	1.37
56603526--56603559	5	7.0	5	86	6	52	58	2	0	38	1.13
56606465--56606512	15	3.3	14	80	8	51	45	29	10	14	1.78
56606548--56606638	20	4.5	20	78	13	96	16	21	25	36	1.94
56606546--56606638	7	13.7	7	75	6	84	16	22	25	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56606575--56606638	27	2.4	27	89	0	101	17	21	25	35	1.95
56606546--56606627	34	2.4	34	83	0	110	17	23	25	34	1.96
56606575--56606643	13	5.2	13	82	8	77	15	23	23	37	1.93
56607677--56607718	3	14.3	3	95	5	77	30	0	0	69	0.89
56617879--56617939	31	2.0	29	84	6	77	63	6	4	24	1.38
56618094--56618156	19	3.2	18	75	20	56	68	0	4	26	1.10
56622621--56622651	16	1.9	16	93	0	53	51	9	0	38	1.35
56631674--56631712	5	7.8	5	100	0	78	58	0	0	41	0.98
56633037--56633112	21	3.5	21	75	12	73	39	0	3	56	1.18
56633033--56633104	21	3.5	20	79	11	74	34	0	4	61	1.16
56639536--56639600	29	2.2	30	88	2	96	27	4	6	61	1.40
56639550--56639624	29	2.5	29	84	6	87	33	4	1	61	1.23
56645348--56645388	19	2.1	20	86	4	57	34	2	0	63	1.08
56654880--56655000	23	5.2	23	83	11	156	11	25	22	40	1.87
56654880--56655000	48	2.6	46	87	7	172	11	25	22	40	1.87
56654965--56655039	39	1.9	39	88	0	114	12	24	20	44	1.85
56654999--56655092	23	4.0	23	75	16	86	11	25	19	43	1.84
56671714--56671770	29	1.9	30	89	3	89	31	8	12	47	1.72
56671722--56671779	30	2.0	29	89	3	89	32	8	10	48	1.68
56672059--56672238	91	2.0	91	91	1	290	46	5	9	38	1.60
56672610--56672653	22	1.9	22	86	9	61	65	0	2	31	1.05
56673009--56673087	18	4.3	18	69	20	65	51	15	6	26	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56673014--56673100	21	4.6	20	69	19	60	51	13	6	27	1.66
56672957--56673218	55	4.7	55	84	6	330	50	13	8	28	1.70
56672957--56673218	112	2.3	112	88	3	386	50	13	8	28	1.70
56674472--56674537	25	2.6	25	82	2	78	30	19	25	24	1.98
56682827--56683036	59	3.5	60	81	6	223	42	7	20	30	1.78
56682853--56683036	59	3.1	60	82	2	228	41	7	20	30	1.80
56683004--56683142	29	4.8	29	80	7	120	36	3	24	35	1.73
56683002--56683154	59	2.6	59	81	7	170	36	5	25	32	1.78
56683028--56683142	29	3.9	29	83	6	135	36	2	25	35	1.70
56683905--56683937	16	2.0	17	94	5	59	6	15	0	78	0.93
56685031--56685069	17	2.3	17	86	8	53	56	2	2	38	1.27
56689197--56689241	17	2.6	16	86	13	63	33	0	15	51	1.44
56689256--56689294	18	2.2	18	90	4	62	66	5	0	28	1.12
56694178--56694247	35	2.0	35	100	0	140	25	28	8	37	1.85
56696141--56696606	61	7.8	59	79	10	493	29	21	15	34	1.94
56696099--56696606	124	4.3	118	86	3	508	28	21	15	33	1.94
56699296--56699320	13	1.9	13	100	0	50	36	8	0	56	1.29
56700445--56700536	30	3.1	30	84	6	98	25	7	5	61	1.44
56701358--56701505	62	2.4	62	82	3	183	31	13	24	30	1.93
56701358--56701513	61	2.5	62	81	3	190	33	14	23	29	1.93
56701381--56701679	154	1.9	155	87	4	435	35	14	18	31	1.91
56701447--56701620	93	1.9	95	84	4	237	36	13	17	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56701530--56701819	57	4.9	59	81	6	322	32	15	20	31	1.94
56706957--56706981	7	3.6	7	100	0	50	88	0	12	0	0.53
56706957--56707000	16	2.9	15	83	12	54	79	2	18	0	0.83
56708407--56708527	65	1.9	63	81	10	147	23	4	17	55	1.59
56709100--56709143	23	1.9	23	85	0	61	47	6	0	45	1.29
56709607--56709643	16	2.3	16	86	13	58	40	0	0	59	0.97
56711897--56711946	20	2.5	20	90	6	75	56	6	0	38	1.24
56719955--56719983	2	14.5	2	100	0	58	48	0	0	51	1.00
56725167--56725223	18	3.1	18	70	9	53	43	7	5	43	1.54
56725919--56726047	68	1.9	68	93	1	222	57	4	7	30	1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193